RNA id: XM_036956107.1


Basic Information

Item Value
RNA id XM_036956107.1
length 4301
RNA type mRNA
GC content 0.49
exon number 11
gene id map3k21
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27610623 ~ 27626785 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACGTGAGGGGAAATCCACCAATCTGCGTGTTCACGAGCTAAACTGGAGCGAGCGAGAAAACTTCCCAACAGGACCAGCCCGCTGCTCAGGCAGCCCAGTGTGTGTATTTTGTTGCTTGAAAAAATAGAGAACGATGACATTGGAAGGAAGACTTTGAAGATCACAGACTTTGGCCTAGCCAGAGAGTGGCATAACACCACCAAGATGAGTGCTGCTGGCACGTACTCATGGATGGCCCCCGAAGTCATCAAGTCCTCCCTCTTCTCCAAAGGCAGCGATGTCTggagTTATGGGGTCCTGTTATGGGAGTTGCTGACAGGAGAGGTACCTTACCGTGGGATTGATGGGCTGGCTGTGGCCTATGGTGTGGCTGTCAACAAGTTAACCCTCCCTATTCCATCCACCTGCCCAGAACCCTTCGCCAAGCTCATGGAAGAGTGCTGGGAGCAGGACCCCCACATCCGGCCGTCGTTTGCCTCTATCCTGGAGCAGCTGACAGCCATAGAGGAGGCGGTGATGGCCACTATGCCCCAAGACTCCTTCCACTCCATGCAGGAGGACTGGAGGGTGGAGATCCAGGAGATGTTTGACGAGCTCAGGACAAAGGAGAAGGAGCTGCGTTCGCGTGAGGAGGAGCTGACGCGTGCGGCGCTGCAGCAGAAGTCCCACGAGGAGCTGCTGAAGAGGAGGGAGCAGCAGCTGGCGGAGCGGGAGATCAACGTGCTGGAGAGGGAACTAAACATCCTCATCTTCCAGCTCAACAAGGACAAGCCCAACGTCAAGAAGAGGAAGGGCAAGTTCAAACGCAGCCGCCTCAAACTCAAGGACGGCAACCGCATCAGCCTCCCGTCAGATTTCCAGCACAAGATCACGGTTCAGGCGTCACCCTCCATGGACAAGAGGAGGAGTCTGAACAGCTCCAGCCCCCCCAGCAGCCCCACACTCATACCCCGCCTTCGGGCCATCCAGTTGTGTGCCCGCATTGACAGTATTCGAAGGGGCAGTATGTATGTGTATCACCAGGATGTGGATATCACCAGCGAATGCCAGCCCTCTACTGGGTTTAGGAAGAAAGTGACTCTGGACGAGAGCAACAGGACATGGGGACGAAGCACCATCTACAAGCCGGAGGAGTTTGATGACGTCAAGAAGGGGATTAAGAAGAAGGGGCGAACGTGGGGACCGAGCTCCGTTCAGACCAAGGAGCGGGGAAACTGTGCTGAAAGAGTGAGGCCACTGTCTGATGGAAACAACCCCTGGTCCACCAGTCTGGTGAAGTCCCAGAAGTCCGTTCCATTGGCTGCATTGTTTGCAGAGCAGCAAGGGACCAATAAAGATGAGATTTGCTCACCAGATAGCTCGGACAACAGCAAACCAAAGCAACTGAAGTTCCCCAATCAGGTCTACATCGATCTACCTCTGTGGAAGGATGAGCAGCAGCAGGGGGGTGAGGGGACGGCAGGAGGCTGCCCTGGGGAAGGCCTGGAGGACCCCAGCACCACCTCAGCCAGCTCCACCAGCACCACCCCCCAGCACACCCCCACCAACAGTCTGAAGAGGGCCTCAGCTCGCCGCCGGACAGATACCGTGCTTTACGTCTGTGCCTCAATGCTGGCCTCGGTGGGGCTGGGCTTCGACCTGCGTGACACGCTCAAGGCCCCACCGGGAGACGACCCTGAGCCCCAGCCCAGcgtggagaagaagaagaaagagggtcTGTTTCAGCGCGCCACACGCTTCCGCCGCAGCACCAGCCCCCCTTGTGGACGTTCCTCTCGCAAGGAGGAAGCAGCCTTATCCTTGTCGGCGGGCTCCCAAGGCCCTGTCAACCTCATCTCCATGTCCTCCATCTCAGAGTGCAACTCCACCAAGTGCCTCCTGCAGTCGGACGCGGAGGGGCCTGAGCCCATCCCTGTGAAGGAGGTAGACCCCAGAGCACAGCCCAACAGCGGCTCCCAGCCACAGGGTCCGGGCAGCAGGACTCAAGCTGAGGTCGAGCCCCTCCCCCAGCCTGCAGCCCCAGAGCAGACTCCGCCTCAGAGCATGGGCTCTAGCCTCCGAAGGAAGAACTCATCTGTCGTTCAGGACACTAATGGTACATCTGGCTGTCACACAACCTCGTCGGGACAATCTTCCACCATGACCTCTCAGAAGAAGTCTGACAGGGAGGAGACCCCTGAGAGAGCAGCCAGTGGGGAGACTGTTGCTTCCAGACCCCGGCCTTTGTCCCTCCGTGGCAAACCCCACTCCTGGGGTCTCTTGAGGGGCCAAAACAAGAGCTACTCCCTGGGCCACTACTCTGGTGAGAAGAGCGCCAGGAGCCTCAACATCGTCCTCTCTTCCGCTGAGGTCAAGATGGACTGCTCTCTGCTTGACATGGACACGGAGGGGCAGAAACGTGACTGCACCGTGCCCCTCTGCCGAATTCAGAGCAGCCCCAGTCGCCCCTCCGTCTTCGAACTAGAGAAAAAGTTCTTGTCATAGCAGAAATAAGCTGCCTTATTACCAGGCTACCAGAGCAGAATCTTTAACGTTTGAGTTGGATCAACAACTCTTATTTGACATTCCAGGGCATTCCACTGCCCTCATGTTTTTTTTAACCTGAATGTGGGCCACTGCTGCTTGATGATACCTGTGCTTTTTTATTTATATCTGTAATATTTTGCTTGGTAATTTAATATTGGgggaaaaaacatatttcaatAGCATCAGGTTGATTGAACACATTCCATTTTTTGTTGCAAAAATGGCGCCATTTCTGCACACACACTGGTTTGGATCGTGGCATCTCAAGTTAGAAAATGATGCGTACTTtaaaatgtcaaacaatgttCATTTGCTTTTGtctataaatatatttttctccAATTTGATTTAATGCTGGTTATTATTTTGTTTTCTATTGATTTTGTTCATCGATTCTATTTTATAGATGCCACAGTGTTTATTTTAGGACAAGTTCTGTCCAATGTCAGAGGTAATATTGAATGTCTTTGGCTCATCTTTGACTTCTGTCTGGAAGTCAACATGTGGCTCAACTGACAGATGTAGAGTAACAGTGCAACCAACAACACTGGAGATCCTAGTCTCAACACTGAAACACTAAGCAAGGCCTGGTCAGCCACTACCTTACCACTATACGACTAGACAAGCGTTACAAACAACTGAACCAGTCCCACTACTGTACAGACTATTCAGCATTATTCGCTGCTGTGTTTTTTGTGGAATATGACCATTTGGCTCGAAACCAATTCACATGGGGGCTTAGTCTACCTAGCTTCCTGTGCAAACACTATTTTGAAGAACAAAGAAATGGTGATTGGATGGGGGGAAAGTATGAAGGTGTTTTATTTGGCTTATCATAAATGTATATTCTGTATGAATGGTTATCATTACAGTATTGATTATTTCACACCTTTGTTCCTAAAGATGGAATGACATTTTGAAAAAACATATTCCAATACTTGTTTGAGTAACAGATGCAGTATTCCTTAGCTTTTTGTTGACAGGAACCGCCTTTTTGATGCACCTAGACTATTCAAGTTGTTATCGTCTAAATATTCAGTCCCATGTAAGTCATCAGTACCGAGCAACATGTAAAACTGTCCTGTAAATATCCAACGTACAGTATTTGTTTGTCCCGTTTATACAGTTTTCAAAAAATATTGAAAGTTAATCTCCTTTTGTAGTACTATTTtaaatctggagtacttctctttATTTAAATCAACATTCCTAACAGTACCTCCCAGTCAGCTGTTGAAGTCAGTACAACTGGAAGAatatcttatttaaaaaaaaaataatgaaacactGCCTTTGAGATCACATTGTCATAGCTAGATAATTTATGGGGTCCTTGCTATATCCTGACATGTTATGCCTGCCATTAATACAACAACTTTGATAAGGCTTTCTTTTTCATACTTTTTATTAGCATTGTGTTTGCTGTGCTTGGGAGAAGAACAGTGCAAGAGATTGAGACAGACATTTACAGATctttagttatttatttttttgaaacttGTTTTATCACATTTTGTTCACACCGCAGAATCCCAGTGCTGTTTTATCCCCATATTAATAATCACAGGCTTTAAGTAATACTTCAGTTGACCTCAACCTTCTTTTATACTTGAACCACTTCAAGAATGGCTGATTAGCATGATAGGTCTTTCAACCAGCATGAATCCTCAGAAACCCCCCACGTTCTTTCTGGAAATGTAAATCAACTCAAGATGACCATACTAAACAAATCTGAATGCATAccgtcagaaagtatttacacccctagacttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922080 lncRNA upstream 226025 27381986 ~ 27384601 (+) True G1680228
TU1921801 lncRNA upstream 295034 27315294 ~ 27315592 (+) True G1679967
TU1921791 lncRNA upstream 309105 27301202 ~ 27301521 (+) True G1679957
TU1921790 lncRNA upstream 309551 27300810 ~ 27301075 (+) True G1679956
TU1921788 lncRNA upstream 310674 27299715 ~ 27299952 (+) True G1679954
TU1922265 lncRNA downstream 6457 27633242 ~ 27633604 (+) True G1680391
TU1922266 lncRNA downstream 6910 27633695 ~ 27634069 (+) True G1680392
TU1922267 lncRNA downstream 7866 27634651 ~ 27635105 (+) True G1680393
TU1922268 lncRNA downstream 9016 27635801 ~ 27636483 (+) True G1680394
TU1922269 lncRNA downstream 12554 27639339 ~ 27639804 (+) True G1680395
XM_021576320.2 mRNA upstream 76142 27494428 ~ 27534484 (+) False rgs17
XM_036956104.1 mRNA upstream 76142 27494428 ~ 27534484 (+) True rgs17
XM_021576314.2 mRNA upstream 246523 27315871 ~ 27364103 (+) False phactr2
XM_021576325.2 mRNA downstream 49808 27676593 ~ 27683907 (+) True LOC110499283
XM_036956110.1 mRNA downstream 143957 27770742 ~ 27786519 (+) False LOC100136337
XM_036956109.1 mRNA downstream 144496 27771281 ~ 27786519 (+) True LOC100136337
XM_021576338.2 mRNA downstream 187604 27814389 ~ 27858095 (+) False arfgef3
XM_021576329.2 mRNA downstream 188432 27815217 ~ 27858095 (+) False arfgef3
TU1922082 other upstream 234807 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 523163 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 834946 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 954515 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 977428 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 1090576 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1151221 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 1830443 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1945650 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1947973 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile