RNA id: XM_021576348.2


Basic Information

Item Value
RNA id XM_021576348.2
length 8256
RNA type mRNA
GC content 0.41
exon number 14
gene id akt3a
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28027289 ~ 28169772 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AACAGACAACCACCCAGCCTGCCTGGTGTACAGAGCAGACGGGGACAGGGATAGACAGAGCCAGGAAAGCCGTCCGAGAAGTGGCTGGGCGTGACGTCACGAGTTTTCGGAACGTCAACAACAACCTGCAGCATCAGAACCTGCCAGCGGCGGTTCCCAGTGGGCGGTTCCTGGGGTAAGAGGAGTTGCTGTCGCTTTTTTCTGCAACCACAACCTCTCCGTATTGTTTGAAGCCATTCCAGCAGCGACACAGTTCATCCTCTCGTTGTGTTTCCGGCCAAAGCGGCTTGTCTCTCATTTATTCACATGCGCACAAGAAAAGCGCGAGCTTAAAAAAGTACAGGCACGATAGGGGAACCCATTGCTCTCCCCACGACTTCCCGCGCCAGTCAGGCTGAGTCACCACTGGAGAGTGGgaaggtctggagagagagaacgagagagagaggggaggggagggagagaagaaacaACCACGAGAGGAAGAGAAGACGCGACACACCacttgtatgtgagtgtgtgagagagagcgagagcaactGAGCGAGCTGCCGGGAGAGCGCGAGTAAGGGAGGGCGAGAAACACCGCCGGCATCGAGGCTGGGAGGCACCATGAGCGATGTCACCATCGTCAAAGAAGGCTGGGTGCAAAAAAGGGGAGAATATATCAAGAACTGGAGACCACGCTACTTCCTGCTGAAAACTGACGGCTCGTTCATAGGTTACAAAGAGAAACCACAGGACGCAGACCTACCCTATCCCCTTAATAACTTCTCTGTTGCAAaatGCCAACTGATGAAGACAGAACGACCAAAGCCCAACACATTCATCATCAGATGTCTACAATGGACCACCGTCATAGAGAGGACCTTCCATGTGGACACGCCAGAGGAAAGGGATGAGTGGACGGAGGCCATCCAGATAGTAGCAGACAAACTCCAaagacaggaggaagagaggatccAATGCAGTCCCACGTCTCAGATGGACAACATCGGAGAGCTGGAGGAGATGGACACCTCTACCAGCCACCATAAACGGAAGACAATGAATGACTTTGACTACTTAAAACTACTGGGAAAAGGCACATTTGGTAAAGTGATTCTAGTGCGAGAGAAGGCTAACGGGAAATATTATGCAATGAAGATTTTGAAGAAGGAAGTCATTATTGCAAAGGATGAAgtggcacacacactcacagagagcaGAGTATTAAAAAACACCAGGCACCCTTTCCTAACTTCTTTGAAGTATTCCTTCCAGACTAAAGACCGCCTGTGCTTTGTAATGGAATATGTGAATGGAGGAGAGCTGTTTTTCCATTTGTCGAGAGAGCGGGTGTTCTCTGAGGACCGCACGCGCTTCTACGGTGCCGAAATAGTCTCCGCTCTGGACTACCTGCACTCCGCCAAGATTGTGTACCGGGATCTCAAGCTGGAGAACCTAATGCTAGACAAAGACGGACACGTCAAAATCACAGACTTCGGGCTCTGCAAGGAAGGAATCACAGATGCTGCTACAATGAAGACTTTCTGTGGAACGCCGGAGTACCTAGCTCCAGAGgTGCTGGAGGACAATGACTACGGCCGGGCGGTGGACTGGTGGGGCCTGGGCGTGGTCATGTATGAGATGATGTGCGGTCGGCTGCCCTTCTACAACCAGGACCACGAGAAGCTGTTTGAGCTCATCCTCATGGAGGACATCAAGTTCCCCCGCACGCTGTCGTCAGACGCCAAGTCACTGCTGTCAGGACTACTCATAAAGGACCCCAACAAAAGACTTGGAGGAGGTCCAGATGATGCTAAAGAAATCATGGGACATAGTTTCTTTACTGGAATCGAGTGGCAAGATGTTTATGATAAGAAGCTGATACCGCCCTTCAAACCTCAGGTGTCGTCAGAGACTGATACCAGGTATTTTGACGAAGAATTCACGGCACAGACAATTACAATAACTCCCCCTGAAAAATTTGATGAAGACGGGATGGATTGCATGGACAACGAGCGGAGACCACACTTCCCCCAGTTCTCCTACTCGGCCAGTGGGAGAGAATGACTGCTGTATCCAGACTGTACTGCACCACCATCAGTACCAATGGAAggttacagtataaaaccaacCTAGCCTGagctaacccctcctctctccatttgGGTCATTCCATAGTGAGCATGGAGATCCATCACTGTATGTTTTATGTGTCTGTTTTTTCATGGGGATTTTGCATGTGTGGTCAGACAGAAGTTCAGCCCTGTTGGTAGTTCCCAACAGTTAAAGGTGCATTTCTTATGGAATGCTCCTTTTAAAGCCTTGAAACTGACTCAAGAGGACAAACGGGTTTGTTGTATTATGTGGTGTGTCATTAGATCCCTTGGTCATTGACTTCTGCGATCCAGTTCTATCTACTGTAGGAGACTGACATTCCTGGTAGGGAGAGCTACTGTCTTTAGCATTCTCATTTCACATAGGACAGTATACTATAACTCGAGATTCACAGGAGATTCTCCATTTGTTTGCTGTGTCATAATCTGCAACGGTCCTCATTCTTCTCTTGATGACGTTTGGTTAGCTAACATCTGTGTTGTGTGTATAGAAATATGTTATACTATAGGATTAGAGATCTTTGCTTTCAGAAGTCAAAAACTGCCAGAAAACGGTTCACTCAGGCTACACAGAGATCAATCTGTCTTCACCTCAGTATACAGGTCACCGGTACTGCTATCTTTACTCTGCAGGTCAAGCTACAAGCGCTAACTATACAAACCACCTCCACCACTTCTCATGGACACTATGACTGTAGTCTCACATATGATACCGTTACGTCATTTTGTCCCTTATTTAAAGTGTGCAACAGTAAAACTCTAGTCTCGTCTGCTATTTGTTGATAAGCTGTGATTTTTACTTTCTCCTCTCGCCTGTGAAATCAGTCATTCGAATAGTGTGAACACTTTGGGATGTTGCTCTGCCAATGTTATGTATGAATGGGAGtaaatgtgtgtgtactgtgtagagATTTTAAGGAGCCTAAAGGCACAGCATTGTTGGCTGTAACCTCCTGTGAATCCGAGCTGTGCGTTAGCTGTCAGGAACAGCAAGGTTCACCTCAACCTGTCTAACAGTGAGGATGAGAGGAAGAGCATTCTAGGTATGCGTGTCAGGGTTATCTGGCTGAAGGTAGATGCTTCCCACAACTGAAATTATGAAAAGCTTTATTTCAGACATATCATCATAGAAAATAAAAGCATTCAAAAACTAAAATGTATAAATGTAAATGAGAAATGCAAGATGGTGGCTGTTTACTGTCTAATGGGGTTTGGGGGTGGGGCTAAATCTGTAAGAAGGGTGAAGGAGTTTGAATTATCTGACCGGGGTGGGGGACATACTGTATAACTATGATTCAATGGGGACAAGAGGGAGGTATTGACATTGTTTGATTTGGACCACAGCAATGGCTtcctgttgttttatttatttgttcttCTTTTGTATAACGGTTCTTGTTATAGGATTAATGTCCAGTCTTTTGTTCTGGATGAAAAAGGCACCTCGAATAATGGCTTAAGAATGTAGAAGCAAAGCcttcatgtttttgtttttgctcaattttttttttttttttgttgattcgTTTCTTTGTTCTCTTACCAAAATATGACGACAATGAAAAAGACAGACAGCACATTAAAGAGTTTTATCAGTACCAAGGTATTATTATTATGAAATCTTTTCCATAAGGCTTTTACATTTCACGGGCATCTAACCTGGAATGTCTAAGTGGTATTGAAACCTTTACGTTCTCTtctccacatacagtatataagggCTGCATACGCTTCAACTCCCTTTCCAACTGGTATGACTCTACTGTTGTCTTCTAGCATCTGAGCATTCCTGTAATACATGTAAATACATGAGAATGGCACAGAACAAGCTTCCTCAAACAGTCTAATTTACTACATTTTAGTTGCTTAATAACACACTGCATGTTTAGGCCTTTTTCTTTAGCGCTGCTTTTTAGAACAAGAAAAATGACAGAATGAATAACTTAAGCATTTACAAAGGGAATATATTCATTGGCTCTACGGTTTTAAAGTCAAGAGATTGTAAGAATAGGCGTAGATGGAGAACAGCTACAAAGCTTACTGAAGTAATGAGTATTATAGACTCAGTGACCAATGTTCCCAGGGTATATACACTGTATAATTCACTTTACTTTGTGGCTGACTACTTTGGGATCTTGTAGCAGCCTTCAATGCTACATAGAATGTAGTTAACTTAACATTATGGTGTTGTATTACCATTTTACCATAGCTAATAGTCAATGACCAATCATTTTTTGGGGTCATCATTTTATTGAAGTGTACCACAGTCAGCATAGGAATCTTCAAGTGATAGTCAAGTCAACCACCTACTCTATGCTGACTGGCATCATTTGATTTATTCTAAAAGTGTACAACATTAAGTAACTTTAGCTCTGTGGATGAAGAGCCATAGTATTCAATGGTACGTaacacaccattctgtatatctatatattttaaagctagtttccttcaattctacacattctgccatgtcttatgtgtgttcatgtcatatgagtgactcaaacattacaacatAATCAATGGGCTAAAACAACattagttgatctggacatttctgacaagttataaataggtCTCTAAGGTCTAACAATGACGAGGAAAACTACTGATGTACTACCCAATTTTTAatttgcaccttgtgcattctactattacaactttcaaaaGTTGAAAGCCCGACTAAGTTCCTAGGGGAACCACTAAGGCACAAGTCCTATCCACTAGTCATAAGTTAGCCTTGCTTAGCATCAATGTGACCTACGATTATCCATTGAAAGGACAATCAGAGTTGACACATTCCTGATTTACAGGTTACATTCAAGTTCCATTTCAGATGTTTGTGATGTAATTTAGGTTCAGTATATTCCACCAGTGGTTTGCAAAGCAAGGAGGACGTAGCCTATCATGCTAATGTCAGAGCAGaagacaaaccatttttgtagcAAGAGATATCCTGTCTGTGAAGGTATGAAAAGAGTTAGAGTGAATGTAGTGATGTGGACCAAAAAGACCAAAGCAGATGTAGTGAcatttctcagattattacacATTCCCAAAGGATGAATGATTGGTCTTATATTCATTGTAGTTGATGGGGTCCAATAAGAGGGAAAAGAGGAAGTTGAGCAAGAGAGAAGTATATTTTGTATGAGTACAATATACTTGTACATTACTAGTTCAGAAAGTGACTGTGGTATGGCTTTGATAGGAGGACGAGTAGTCGTTTGGTAGAACTAATTTTGAGGTGGCTCGATATAGTGAGTCTATTGAAAAGGTATGATGGCCATAACTTCAAAAAGTGTGCCATGATTGGTCCATATTTAAGCCACTTGAGAAAGTATTATTTTGTTGCATGGAACAAGTGTGGTTTTGAGATTATATTGCAAAATGAGCAATGGTGAATCTTGTTCAGTTGTGATACAAGTAGGAAGTTAACTCTTCTCATAAGAGAAGACTGAAATATGAAAAAGACATTTGTCTTAGCAGTTAATTGTTCATGATTGAATGTCAGTCTGTTGTTTTATTAATATGGCCAATGTATCGTAGAAGAATGTGGAGAGAAACTGAACAACTGTGCTGTGATCACTAACCCCCCCTAGGCTTTCAATTGTGTGGTTGTCTGTTATGGTTGAGTTTTCCTCTTTGTCTTCCAAGATGCATTCCTTTTTTGTTTTTGCTGGTATGTGTTTTGACTAAAAAAGAAACATTTCACCATGTATGATTAATAGAGGCTTTTATTGCTTAATGTGAtttttatttaaacatttttaaaaatattttttatcaaaTGGACAACTTgaatttgttttgtttattttatttttgaattGAATATGGTTGAGTATAATGTTTTGGGGTATTTAGCAGTTATGTtatggtctttagtactgcagcTGATTATGGACGTCGGGGAAGGAAGGGAGAGTTACTGTCTTTCGCCTTTTCGGCATTACTATTCTTTTTTCTGTGAAATTCTGTTTTCTCCACCATTTGTCAAAGtcacacaaataaataaaatcttgCATTATTATGTCAAATGCTTGATTATGTCCCTGGGGGAGAAGATCTGCGTTAAAGCTTGATTttaaatgtaaaggcaatgttcccgcattGCGGAAACTGCATTCATGTTAAATGCTGCATATGTTGGCCCAATCGGAAATCTTTACATTAACGCAGATCTTCcacgatacggattgaatccaaCCCTTAGCCCCCCTTAACGGAAACTCCCATtccaaattgtaaaaaaaaatgcaaactGAGAAATCGTGATCAGTGGTGAAAATATTGTTAGTCGTCGCATCCCGCGGTATGTTGACAGACGCTACGATACCATCCTGTTATGTGCATCTAACGAGAGATTAGTGGTACTGCTTCAGACACAGAAGACTTCACATTTCACTTGGCTGAACTGTGACTATTGCTGGCTTCACGTGCTTGTGGGAAATAGGAAACTTGGATGTCCAACAGGACTGTGTTCAAGAGAAGTGCTTTTGAAGTTGGAACAATTCTTCAACCAATAAGCTTGCCTACATTGCTAATaataaagttggctagcttgctttATATTGACAATATGGTCAGACTTGCTACATTATTGACATTGATAAggttattgtaaaaaaaaacgtATGTTGTTATCTTTTGGTTGAAAAGGTCAGTGGTAAGACGTGGCAACTCGGGGAACAACCTTTTCTCTGAGTTTCCCACTTGTAATTCCGACTTGGAGGGTCATTCAAGTGAGTTTTCCCACTGGGAATTAGGAGCTTCTGATTGTACGTGAACACGGCAATACTTCCATTTCATCCATATGAATATGCACTTATAAAAACAGTCTATTCCTTTTTTATAAGGACATATTTGAGAACAGGGAATTTCAAGGTGGAAGCTAATGTCCTTATTgacgttttttttttacttttaaagaAAAATAAGAGAATTACTTGAAAGCACAGTCCCCTCATGCAGTCCATGCTTAAATGAGTTCATTGTTAAAATATTGTCATAATGAAGTGTGATAATAACAAGGCCAGGAGAGGCTGCTGGGAGACAACTTCAGCAGAGTGACACTGACGAGGTCTTACCTTTCTACTGGACATGTCTTACCTGTTATTCTAAGAGAGCTCAGTTTCCACGGGAAGGTTGGACTCAGTTGCACTCAGTCTCAACGATTCAATTTAGAACTcgcagataaaaaaaataatttaaaaaaaatgtagctaTATGTGAGGAGGATACGTAGAACATCCACCTAGGAATCCCAGATGTTTGTTTCTGCGGGTCATTAACATAGTGATGTTCAGTTCCACTGGGTGAAGCATTCTAGTGCCGTTGGCCATCTCCAGGGTCAAAGGTCTGGGGTGAGCTGTGTGATCACCTCGAATCCGACCAACGACAATGTGGGTTCTATCCTTACTAACTGCAGGGTCTATATATAAATCTATTTTACACCTCAGTGTACACACTTTGCTGCTACTGTTTGTAATGTCTACAACAGATTTTCTTGTCATCTTGCTCCTGGTAGTGTTATGAACGAGCATGAATTGTAAAGTATTTATTGAATAACAAATCGCTGTCAGATGAAAACCTCATCTCCAAAACTAAAAACGGCCATATTTTCCcattaaacaaacatacaattcTGAACTTTCAGAAGctattttacatacattttattgGTCCTAGAGTCAATGTTCAGAGCACATTGAGTGGACTTACTGCTTtcaatacatgtaaaaaataacaatttaaaagGTTACGAGGTATTCATCCAACAGCGACGTAATACTAACTTGTAATTCATTTGATGTCCATGTAGCTTCAGTTTGACATTTTCTTGACCTTGCTAGCTCTGTCATTAGATCCACGTTAATAAGAGATAGTCGTGTGGTTAAGGATTTGAAGCAGAAGGGATGAAGCATCAGTAAAGAGAACAGTTGTAGTACTCCCTGTCATTAAAGAATACAAAACCTTTTCTTTCCCCTTGTGAATAGGACCCATGAGGATGTGAAAATTATATGATCTGCAAGAAAGTGTTTTTGTACACTGTACGTCCTTAGTATTTTTACACGTAAATGTATATGATAGGGATACACGTTATTTTCCTTCTTACAGACCGCTTAAATAAAGCACCTTGTCAATCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922739 lncRNA upstream 472 28026511 ~ 28026817 (+) True G1680826
TU1922603 lncRNA upstream 35233 27991571 ~ 27992056 (+) True G1680704
TU1922692 lncRNA upstream 89592 27937194 ~ 27937697 (+) True G1680780
TU1922623 lncRNA upstream 218363 27805494 ~ 27808926 (+) True G1680722
TU1922613 lncRNA upstream 228891 27798003 ~ 27798398 (+) True G1680714
TU1922863 lncRNA downstream 56223 28225995 ~ 28248967 (+) True cep170aa
TU1922886 lncRNA downstream 85444 28255216 ~ 28255554 (+) True G1680964
TU1922890 lncRNA downstream 91323 28261095 ~ 28261302 (+) True G1680968
TU1922891 lncRNA downstream 92065 28261837 ~ 28262116 (+) True G1680969
TU1922897 lncRNA downstream 106334 28276106 ~ 28276823 (+) True G1680975
XM_021576342.2 mRNA upstream 57967 27943767 ~ 27969322 (+) True adss2
XM_036955522.1 mRNA upstream 160777 27864868 ~ 27866512 (+) False lhb
NM_001124205.1 mRNA upstream 160778 27865523 ~ 27866511 (+) True lhb
XM_021576332.2 mRNA upstream 169194 27815217 ~ 27858095 (+) False arfgef3
XM_021576351.2 mRNA downstream 56138 28225910 ~ 28293688 (+) False cep170aa
XM_021576352.2 mRNA downstream 56140 28225912 ~ 28293688 (+) False cep170aa
XM_021576350.2 mRNA downstream 56141 28225913 ~ 28293688 (+) False cep170aa
XM_021576353.2 mRNA downstream 56141 28225913 ~ 28293688 (+) False cep170aa
XM_021576359.2 mRNA downstream 56141 28225913 ~ 28293688 (+) False cep170aa
TU1922082 other upstream 651470 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 939826 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 1251609 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1371178 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1394091 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 547589 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 608234 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 1287456 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1402663 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1404986 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile