RNA id: XM_021576355.2


Basic Information

Item Value
RNA id XM_021576355.2
length 7228
RNA type mRNA
GC content 0.52
exon number 18
gene id cep170aa
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28225910 ~ 28293688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCACTGGGTCGAGCTGGAACTGCAGACGCTGGCGTGGAGGATGTAGGCAACTCTCCGCTATTTGTAGTGGAATAGCGTTATTGCAGCGCAACTGAGGGAAGACCAAAGCGCATAAGGACAGGGCTGGGCACCGACATCAGCGTACAGTTCCATTGGATATAGCAAGCCTCCATAACAGCCAGCCGAAAAGAGCAGCAAATAAAGGgaTGACGTAGGGTTGGAGGTGGGAGTGAGTAGCATCGAGCCGTAGCAGAGCAGAGATGAGTCTCACATCATGGTTCCTGGTGAGCAGCGGGGGCACTCGCCACCGTCTGCCCCGGGAGATGATCTTTGTCGGCCGAGACGACTGCGAGCTCATGCTGCAGTCACGGAGTGTTGACAAGCAGCATGCAGTCATCAACTACGAGTTAACCAGCGATGAGCACAAAGTCAAGGACCTTGGCAGCCTGAACGGGACATTTGTGAATGATGTTCGAATCCAAGAGCAGATGTATATCACTTTGAAGATCGATGACAAGTTAAGGTTTGGATATGATACCAACCTGTTCACGGTGGTGCGAGGCGAGATGACTGTCCCAGACGAGGCTCTGCAGCATGAGAAGTTCACCAGCCAGCTCCAGCTGAGTAAGAAGCCTTCCAACGGTGAGCCCACCAAGTCACCTACcaaatctcctcccaagtctcCTGCTAAGACCCCCAAGTCCTCCAGCTGCAGACCAGCCGAGAGCAAGGCAGCCGAGGGGACCATGGAGCCATCAGCCAAACCTGCCGAATCACACAAGGGAGATGACAAGATGGCAGGGGACATAGCAGCATTGCACCGGGGAACCCCTCTGTATGGACAGCCATCTTGGTGGGGGGATGGGGACGCAGACGATGAGAACTCCTTCAAGCAGGAGACCAAGACGTGTGGGAAGAAGCATGACAGCTCTGCAGCAGACGGCAGAGAGCCTAAGAGGAGTGAGAGGCCTAGGGAGGACGGCCTGGGCCCCGAGCCGAGCTACTTTGAGATACCCACCAAGGAGGCTCAGATGGCCGAGGACAGCATTCATGAGATTCCCACCAAAGACACTGAGGGGGCTGCTGCTACCGCCAGCGCTCAGGGCCACGCCTCACCTCATGCCTTCACAATCGAGTTTGATGACACCTCCCCTGGCAAGGTCACGATCAAGGACCACGTGTCCAAGCTGACTCCGGACCATCGGCCCCGGCCTAAGAAGGCCTCCCATTCAGGCAGCAAGGACCTCAGCACCCTGCAGGCCGCCATGATGGTCTCTGAGAGCAAGGTGGCTGATTGGCTGGCCCAGAACGACCCCCCTACGGTGCGCAGTGAGTCCACGGAGGACAGCAAAAGCATCAAGAGTGATGTCCCTGTCCACTTCAAGAGGCTCAAAGGCAGCAAGCATGAGGATGGCACCCAGAGCGACTCCGAGAACGGAATTGGTCTGCGCTTCGGCAACCGGAGGCTGGCTTTGGAGGAGAGGCTGAGGGTGGCGCAGGGAGGACAGGGGGGTCAGGGGGGCCGGACCACCAGCAACAGGACCGCCTTCATGATCGAGTTCTACGATGATGACAACTCCCGCAAGCGACGATCCTACTCCTTCTCGCAGACTGCACCGCTGCTTGGGGGCGCGGCCGGGGAGGCTCTGTGCCCCACGCCCCCCTCCCACCCTAAGTCTCCCTCTACCACAACCACAGCCACAGACTTCAGCAAGGCCCCGTTATCAGCGGCCCTGATAGCGGGTGCCCCCACGGCCGCCCGGGTCCTGATGAAGCAGAGGTCTGAGGACCAGAGCATAGGAAGGAGCTCGGTCAGTACAGGTCACCAGACAATTGAGCCCAGCCCCAGTGAGGAGGGTTTGAGGACCCCTCGGTCTcagggggacagggacagagagcagGAGGATGACCAGAGCGATAAGGGAACCTACACCATTGAGCTGGAGAACCGCAaccctgaggaggaggaggccaggCGCATGATAGACAAGGTGTTTGGGGTGGAGCAGAACCGGGATCCGTCTGTCTCAGGACCAGTAGAACACCAACAGGGAGAAGTggggaaggagaagaaggagaggaagaagaccACAGAGACGGGAGAAACTGAAAAACCAAGCTGCCTTCCATCTGAGagTGTGTCTGAGAACCCGGTGGCAGTGGGCAGTAGTCGCTGGGTGTCTCAGTGGGCCAGTCTATCTGCTAACCACACCAGGACTGACCCAGAAGGGTCTGGGGCTGAGTCACCTGCCTTCGTCCATCAGCAGAGAGAAGCGGATGCCTTTGAGTCGGGTGTGTCCATCCGAAGCGCCAGCTCTGCCACCTCCAGTCTCACAGAGCGCAAACGCAGGACCCTCCCCCAGCTCCCTATCGACGACCCCCGGGCTAAGCCAGGGAAGAGCTTGTCCGGCCTAGGCCTGCATCGCTCAGAGATCGGAGAGAAACAGGACACGGAGCCCCAGGAGAAGAGCCAGGTGGAGCATAAAGGAGACGGGGCGTGCTTTACCTCCATAGAGGAGGGGGATATGATGAAGGGCAAACAGAAACAGACCAAGGCCCCGCTACAGGCCTCCTCCAAGCCTCCTCTTAGACCTATGAGCAGCAGTGAGAAGAGGTCCGAGGAGAGAAGGAGGCGGGCGGAGGACAGGATTCAGCACCACATCAAAGAAGGAGTGGACGGGGGGGAGAAGTCAGGTGGCAAACCTTTGGTTCGCCAGGGCAGTTTCACCATCGAGAAGCCCAGTGGTGTGGTGCCCATTGAGCTGATCCCCCGGATCAAATGTGGTGCTGGTGTCCTGGGCCGCGAGCGCAGCGACTCTGTGGGCAGCATGGACACAGCCACCCTGCTGAAGGACACAGAGGCTGTCATGGCCTTCCTGGAGGCCAAGCTGAGGGACGAGAATAAGCTGGACAGATCCAACCGGGCAGGTTCCATCTCCCCCGAGTCAGACGTGGACACGGCCAGCACCTATAGCCAGgtggcaggggagggagagaagaaaacaGCCCACCAGAAACGCCGCTCCCTAAGCAGCCTGCACAAGGAGAAGAGCAACCTGAGCTCAACCTCCAAAACCGCTGCCAGCACCAACGCCCGCGAGCGCCTGGAGAGAAAGACCAAGACCAGAACTGATCCCAGCCGGCCAGATGTCCGCCGCTCCGTCCAGCCTGCCTCCTCGCGGGCACGCCAACCATCCCAGGACCTCACGGATGACGATCAGACCTCGTCTTTCCCCATCTCCGACATCCTCTCCTCTGACCAGGAGAGTTTGTATAGTCGCTCGTACGGCCGCAGCCACTTCACCTCTACGGATGACCTGCTACATTCAAAACTGGAGGCCAAATCCAGCAGCAAGACCAGCTCCAGTAAGTCCAGTAAGACCCTCCAGGCCGCCACAGCTTCCTCTCTGGGGAAACAGGCCTCTCTGCCCCAGCCACGGCCTACCAGAACGTCCCTGCTCCGCCGGGCCCGGCTGGGGGACACGTCCGACACAGACCTGCCTGATGCAGACAGGATGTCTGTGGCCTCCGAGGTGTCCACCACCAGTTCCACATCCAAGCCTCCGTCTGGTCGTAAAGGCCCCTCGCGGCTAGACATGCTGGCCCAGCCCAGGAGGACACGGCTGGGCTCCATCTCGGCCCGTAGTGACTCAGAGTGTACTGTGGGCCGGAGCAGCACCTCCTCCCCTCGCCTGTCTGCAGAGACCGCCCTGCGTCTGGGACTCCGCTCCTCCACCCCCACCGACAACAAAATGGCTCCTCGCATGAGGGCCAACAGTGTGTCCAAGCTGACCGAGGCCAAGTCCAGAATCAGCCCCTCCATCCACAGCACTCCCTCAGCCTCTAACAGGTGGAGACGGCTGCCCCCAGAGTACGGATCCACCTCAGAGGAGGAGTTTGGCTCCAACAGGAACTCCCCCAAACCTGGGCGCACCCTGCGCCCCCACTCGGTCCTGAGGGGTACCAGACTAGGGGGCTCCACCAGCAGCCTTAACTCTGGTCAGGTTGGCCCTGGAGGCATGGTCCTCAAACACCGCATGAGGGAGCAGGAGGAGTACATCAAGGACTGGACTGCTCACAGCGAGGAGATTGCCAGGTTATTTCCCTGTGTGCGCAGGATCAGTCAAGACCTGGCCAAGGACCTGGCCATCCTCGCCCGGGAGATCCACGACGTGGCCGGAGAGATCGACTCGGTCAGCTCCTCTGGAACGGCTCCCAGCACCACGGTCAGCACCGCCGCCACGACGCCCGGCTCCGCCATCGATACCCGCGAAGAGGTAGGCCGCACGCAGGAGGGCATGCAAAAGCTGGTTGACCGTGTGTTTGACGAGAGCCTCAACTTCAGGAAGATCCCTCCCATGGTGCAGAACAAGGCCCCTGAGATAAACGGACGCCCTGTGGAGCTCCGTCCCCGCGCCCCAGACAGCCTGGACTCCCACTCTGCCCTCCGCAGACGCACATGGAACAGGGATGAGGCGGTGGTGGACAGTCTGCTGCTCACATCTGTCTCTCAGCTGTCAGCTAAAATCAGGCAGTCTGTTGACAAAACAGCAGGAAAAATACGAATATTGTTCAAAGACAAGGACAGGAATTGGGATGAGATTGAGAGCAAACTCCGATCTGAGAGCGACATACCACTTCTCAAAACCTCTAACAAGCAGATCTCCTCTATCCTCGTGGAGCTGAAGAGAGTGGAGAAGCAGCTACAAGTGATAAATGTAATGGTGGATCCTGACGGCACCCTGGATGCCCTGAGCAGCCTTGGCCTGACTAGCCCCCTTACACCCAAGCCCACTCCTGGTTCTCAGGGGCCCCAGGAGGCCCTCCCAGGCCCCACAGCATCAGCCAGGGGCAACACTGCCGCCTCAGCCCCCACTgaggggtcagggtcagggtctggGTCAGCCAGAGACCTGGGAGGCCTGCAATTCAACCGCATCCACCCCAGTGGAGAAGAGAGTGCCATCCCCCAGAAGTGACATTCACACCCTCTGCGCAGCTTCAAATGTAGAACACCCGCCTCAAAGAACAATTTCCCCTCTTtctgaatttttctgaatgaaGATCCACCACCCTATAGTCTACTGTATGTCAGAACCCAACAGGACAGGCCTTAAGCAGGATTTCTTCCCTTCTCTTTAGACGTACAGTCATGCACGCATGactaagtgtctgctaaatggcatattatttaTTCATGTCAATGGACATGAACAACACCACTAAGTCAAGCAGCTCGCATCAATCGATACACACAGAGGAGTGGCAGTCAGCAATGTGTGTGGTCGAACTCTAGCCAGGCATATTTGCATTCTGGAGTTTGGTTACCATCCTCCTCCATGCAAACTGGCCACAGACACACCCTGTGGTAAAGACAACTTCTAGAGTGCCTCCCATCTTTCTTCTTACCCTTCGTACTGGCACCAGCTAAACAGTGAACACTTTGTATTTGTGTCGCAACAAGTAGCATTGACATTTAGGATCAAGATCGACTGAGTAGAGCGTTCTCTTTCGGAAAACTTGTTTGTGTCATTGAAATTAATCATACTAATTTAGTAGGAGTTGTCGATTGTATGAAAACAATTGCTTTCAGGAAAACAAATGTTCTTCTTTTACTATAGTAATTCAAACTTACCAAAGCTAAcagtacagatttttttttttatgtgagcCAAGTTTCCTGAAGTGAAATAAGTGTACTGTGGAGCAAACTCAAGAAATGTTATGTATTGTATTTTGAATGGCAATTTATCTGTTTTGCTGGTAATATGTTTTCTATCTGTTTTCTGCACACATTTGACTAAAATACTGAATTTCAACTTTTCTGAGCAGTTATGTACCCAGCGAATCAACTACATTGTTATGGTGATGTGCAATTCACACAAAACCATTTTGATACTGTTTAAAACGGTTTTAGACTATATTACAGTACAATTTTAAACTATGTTACATTACAGTGCTGCTTGTATGTAGCCTAAGCCTGGTCCTTGACCTGAGTGACATATTTCATATGATTTGCATTACTTGATATGTGGTGTCTTTGCAAACTGGAAGTGGAAACGAAAATCTGACTATGACCCTATTTGTTTCAGCTTGGGCTGTTTTGAATCAGCCTTATTTACTGTAACAATtcatacagtaacatgctattTTTCTGGACTCCATAATAGTTTACAAGATGTCCACCCTGAATGGCCTTGGTTGGAGAAAGCTGGTGGGTCTTCTTTCAAAGGGGCCTCTGTCTGTTTAGTGTTTATTTACAAGGACTTTTTGAAATTGTATCAGACAACATGACTGCAAAGAGCTTTACTGTCAAAGCGTCATTCGCTGTGGCCACTGTCATTACTTCACGTATGAATGATGATCATAAAGTCATTTGATTTCTTTCGCAAGCCTTTTACTGACATTGAATCACTCACTCTTCTACATTTCCATAAGGGAGGATGTTTTACTCATGCGGTATGTGTGTATAGACCTAGACCTCCTCGTTGAGTTTGCTGCTTCTCTGTAGTTCCTTTTTGGAGGGTTAGCCTGACCATTGTACAAGCCTTTCCATGTAAAGTTATGTGTTGTAGTATAAAATAATTCAAGATAGTGCAACAGTATTTAGACACTTAAGCAATAGTGAAGTTAGGTACCAGAAGACATGCTCTCCATCTTTTCTGCTTTGTATACAGACTTTTGATGTCACTAAGTGCCCAGTTTGAATAGTAGAATGGCATTCTTTTTAAATTATGAGTAATCATCAAGTAGTGGGCTGAAATGATATAATTTTGCACATCGCAGTGTGAGAAAATATGAAATGTGTCAAAGGCTCTTCAAGTGTCACCATGAGTGGTTTTTGGATACAAAAGGACAAAACCAAAAACCTAAATTCAACAACAGATATCAAAAGTAGATGCCTTGCCTCTGTGTAGCTATTCTCAGTACACTCACTATCTTAACCATAACCTTCATGTTTGTCAGTAtatgaaaaaaagaaaaaaaagaaagcaaTGGTAAGAATTAAGTGCTCAGTACACTTTTTGGGGGGTTATTTTTAAAGTTTACACATTTGTTATCTTCTCAGTGTTTTACTTTTCTGTTTCATGTTTTGTATAAACCAcaactttatttattttgttgttcattcaatgtattttgttgttgcaattcatgtgttttatgttttttttgttattttacatATGTTACTTattttcaataaaataaaaagtgttgATCCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922791 lncRNA upstream 126345 28098477 ~ 28099570 (+) True G1680874
TU1922739 lncRNA upstream 199098 28026511 ~ 28026817 (+) True G1680826
TU1922603 lncRNA upstream 233859 27991571 ~ 27992056 (+) True G1680704
TU1922692 lncRNA upstream 288218 27937194 ~ 27937697 (+) True G1680780
TU1922623 lncRNA upstream 416989 27805494 ~ 27808926 (+) True G1680722
TU1922602 lncRNA downstream 5655 28299343 ~ 28301581 (+) True G1680703
TU1922951 lncRNA downstream 114391 28408079 ~ 28408380 (+) True G1681025
TU1922962 lncRNA downstream 175473 28469161 ~ 28470449 (+) True G1681035
TU1922990 lncRNA downstream 176787 28470475 ~ 28470973 (+) True G1681062
TU1922994 lncRNA downstream 181241 28474929 ~ 28475246 (+) True G1681066
XM_021576348.2 mRNA upstream 56143 28027289 ~ 28169772 (+) False akt3a
XM_021576349.2 mRNA upstream 56143 28027289 ~ 28169772 (+) True akt3a
XM_021576342.2 mRNA upstream 256593 27943767 ~ 27969322 (+) True adss2
XM_036955522.1 mRNA upstream 359403 27864868 ~ 27866512 (+) False lhb
XM_021576362.2 mRNA downstream 22801 28316489 ~ 28331818 (+) False abcg8
XM_021576364.2 mRNA downstream 22801 28316489 ~ 28331818 (+) True abcg8
XM_036956117.1 mRNA downstream 185112 28478800 ~ 28525093 (+) False ppm1ba
XM_036956118.1 mRNA downstream 185113 28478801 ~ 28525093 (+) False ppm1ba
XM_036956119.1 mRNA downstream 185113 28478801 ~ 28525093 (+) False ppm1ba
TU1922082 other upstream 850096 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 1138452 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 1450235 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1569804 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1592717 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 423673 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 484318 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 1163540 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1278747 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1281070 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile