RNA id: TU1922863


Basic Information

Item Value
RNA id TU1922863
length 1371
lncRNA type sense_over
GC content 0.47
exon number 5
gene id cep170aa
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28225910 ~ 28293688 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGCAGCGCAACTGAGGGAAGACCAAAGCGCATAAGGACAGGGCTGGGCACCGACATCAGCGTACAGTTCCATTGGATATAGCAAGCCTCCATAACAGCCAGCCGAAAAGAGCAGCAAATAAAGGgaTGACGTAGGGTTGGAGGTGGGAGTGAGTAGCATCGAGCCGTAGCAGAGCAGAGATGAGTCTCACATCATGGTTCCTGGTGAGCAGCGGGGGCACTCGCCACCGTCTGCCCCGGGAGATGATCTTTGTCGGCCGAGACGACTGCGAGCTCATGCTGCAGTCACGGAGTGTTGACAAGCAGCATGCAGTCATCAACTACGAGTTAACCAGCGATGAGCACAAAGTCAAGGACCTTGGCAGCCTGAACGGGGTGAGTGAGAGGAGGGTGATGGGGTAGGGGAGGAATAGAGAAGAGATGTAAAGGGGTCAGGGGATAAAGGGACATTTCACCGCTGTTCCATTTCACTATATATGTCCATTAATGTGCTATTAACATATCATATGTGTCATAAACATTTTGAATTTCCTCACTACACGCAAATATGAGCGTTTCTGCATCTCACCAGTAGAAACGGGCCAGCTACATTTCCGGGCTGTAAGCAAACCACAATATCCAGAATTCATATCAATTTCAGGACGTAGTACCACCCGTGGAGGTGTATCCAGTTGATGTGAGAAATATCAAAACATTTATGTTTGTAGCCAGCACTTTCAGCCAGATGGTTTCGAAACGGAACTGAAGTCTCAACTAATGGGGTTGCCATGTCGACCGAATGTTGAAAAGTGACGCTATTCCATCGATTTTCCCCTTCGCTTCAAAGAGGAGCGTATCCGATCCGCCAACATCAGAGCAGAGGTCAAACTGAGAGTCCCATCAACCTATGCAGAGGCATCAAGCTCAGCGCCCGGAACTAGTGAGACTTGCAGTACAAACAAATCTTCTGCAAGAGGTGGAATCAGTGGGTGGTGAAGAAAGTGTATGAGAGGCTagtccacctggctgtggagTGCAGGAAGAACCAGATGGTTGTCTACAAGGAGCCAGAGTCACAGCCCCACAAACCCAACATCGCCACAGCGCAAAAGCCTGCAAAACCAGCTGCCATTACCCTACACAAGAAGAGGTTCACCAGCTGAAGAACATTCTAGAACCTGCCTGGAACATTCAACCAACACAACATCCATATTCAGTTAGACTGATGTTGTAGTATAATATATAATGCCCAGTATGCGCACAACTGCATTGTGATATTGCTACAGTAGCTgtggtacagtatgtatataATGGTGTTTTATACCTTTTTTAAACTGTACTGACAAGTGACTAAATGATTCCAGCTGTATAAGAAACCAATAAAGAGTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922791 lncRNA upstream 126425 28098477 ~ 28099570 (+) True G1680874
TU1922739 lncRNA upstream 199178 28026511 ~ 28026817 (+) True G1680826
TU1922603 lncRNA upstream 233939 27991571 ~ 27992056 (+) True G1680704
TU1922692 lncRNA upstream 288298 27937194 ~ 27937697 (+) True G1680780
TU1922623 lncRNA upstream 417069 27805494 ~ 27808926 (+) True G1680722
TU1922886 lncRNA downstream 6249 28255216 ~ 28255554 (+) True G1680964
TU1922890 lncRNA downstream 12128 28261095 ~ 28261302 (+) True G1680968
TU1922891 lncRNA downstream 12870 28261837 ~ 28262116 (+) True G1680969
TU1922897 lncRNA downstream 27139 28276106 ~ 28276823 (+) True G1680975
TU1922602 lncRNA downstream 50376 28299343 ~ 28301581 (+) True G1680703
XM_021576348.2 mRNA upstream 56223 28027289 ~ 28169772 (+) False akt3a
XM_021576349.2 mRNA upstream 56223 28027289 ~ 28169772 (+) True akt3a
XM_021576342.2 mRNA upstream 256673 27943767 ~ 27969322 (+) True adss2
XM_036955522.1 mRNA upstream 359483 27864868 ~ 27866512 (+) False lhb
NM_001124205.1 mRNA upstream 359484 27865523 ~ 27866511 (+) True lhb
XM_021576361.2 mRNA downstream 15066 28264033 ~ 28293688 (+) False cep170aa
XM_021576362.2 mRNA downstream 67522 28316489 ~ 28331818 (+) False abcg8
XM_021576364.2 mRNA downstream 67522 28316489 ~ 28331818 (+) True abcg8
XM_036956117.1 mRNA downstream 229833 28478800 ~ 28525093 (+) False ppm1ba
XM_036956118.1 mRNA downstream 229834 28478801 ~ 28525093 (+) False ppm1ba
TU1922082 other upstream 850176 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 1138532 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 1450315 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1569884 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1592797 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 468394 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 529039 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 1208261 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1323468 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1325791 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile