RNA id: XM_036956119.1


Basic Information

Item Value
RNA id XM_036956119.1
length 4155
RNA type mRNA
GC content 0.46
exon number 8
gene id ppm1ba
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28478800 ~ 28525093 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGGACATCGAGCAGAGCTCTTCTGTGCTTTGGCCCATCAATGGAGGAAAGAACGTCATCTGTTTCATACATTTAGTTAGCTGCCAAATCAGTTCAGTTCTTCCATAAACTAGTATTTTTATCCCACAACACATTGTTTTCATAGCGCTGTCTCTTTTGTGTGCCAAATATGCATAAAAAAGACAACAGTCAGTGCCAAGAAATGTTGAAAAGGGAATTCGTGTAAAGGCAAGTGCTAGCCTTGCTATCTtggttagctagatagctacaaTTCTGATCAGCTAGCTAGTTCAAGAAACCGAATTAAAACCCCAAATTAATATCCAAGTAAAGAAATATTCAATTGCAACCAGACGAGGGGCTATTTGAAGCAAACTCAATTTCTGCTAAAACGTGGTGGCCTAAGCCATGGGGGCGTTCCTGGACAAGCCCAAGACGGAGAAGCACAATGCCCACGGTGAGGGCAACAACCTCCGTTATGGCCTGAGCAGCATGCAGGGATGGCGGGTGGAGATGGAGGACGCCCACACCGCTACGGTGGGTCTACCCCATGGCCTGGATGACTGGTCCTTCTTCGCTGTCTACGATGGCCACGCCGGCTCCCGCGTGGCTAACTATGCCTCTAAACACCTGCTGGGGCACATCATCACCCACAGCATGGGTTCCCCGGGCCCTGAAGGTGTCACCCCAGCCCCCACCGTGGATGTGGTCAAGACGGGGATCCGCACCGGTTTCCTGAACATCGACGAGCACATGAGGAACTTCTCAGACCTGCGTAACGGCATGGACCGCAGCGGCTCGACAGCCGTGGCCGTACTGCTCTCGCCAGAGCACCTCTACTTCATCAACTGTGGTGACTCACGGGCCGTGCTCTACCGCAATGCGCACGTCTGCTTCTCCACGCTTGACCACAAGCCCTGCAACCcacgggagaaagagaggatccaGAACGCAGGTGGCTCTGTAATGATCCAGAGGGTGAATGGTTCCCTGGCCGTGTCCCGGGCCCTGGGAGACTACGACTACAAGTGTGTGGATGGGAGGGGTGCCACAGAGCAGCTGGTGTCCCCAGAGCCTGAGGTGTTTGAGATTGAGAGGGCCCCAGAGGACGAGTTTGTGGTGCTGGCCTGCGACGGTATCTGGGACGTGATGAGCAACGAGGAGCTGTGCGAGTTTGTCAAGTCCCGTCTGGAGGTGTCCCACGACCTGGAGAAGGTCTGCAACCAGGTGCTGGACACCTGCCTGCACAAGGGAAGTCGGGATAACATGAgtgttgtgttggtgtgtttgccAAACTGCCCTAAAGTGTCAGAGGAGGCGGTGAAGAAAGATACAGAGCTGGATAAGTTCCTGGAGTCTCGCGTGGAAGaGATCTTAGAGAAGGCAGGAGAGGAGGGTATTCCCGACCTGGTGACGGTCATGAGGAACCTGTCCTCAGAGAGCATCCCTAACCTGCCACCAGGGGGAGGCCTCGCCAGCAAACGCAGTGTTATCGAAGTAGTGTACAACCGGCTGAACCCACACAGGGAAGTGGATGGGATTAGAACCAGCAGGACAGAAATGGGACAGTCAACGAAAGCAAGCAAGACACGTCGGGGACAGCCCTCCTGTATCATTTGACTGGAGCAGACCTTGAGGACCCCTGGTAACTGGCCATCAGAACTGCCTGTTCCTACAACGGGACTCCTTTATACACAAGACATCTTTACTCACTTTAttccttttttatttttcctACGATACCAAGAGATCGATTGGACCATAAATGACGATTtaaaaaaatcacacaaaaaatcagttaacacacaacacaaaggattgcaaaacatttttgatTAAAAAAGGGTGTTCAAAaagcactcgcacatctgagctgtCTTTGCTGCAGGTGCATGCTAACAATGGAATAACATGAGAAAAAAGAAGAACCGCGCTCACGTTAGAGCTTTGTtgaaggccttgaggccgatacgtaaagcttcaTAAAGAACAGCGATACTAGCAAGAGTAGTGTGCCGGTTTCTTCTTTTTTCTCATCTTAAAAAAGGGGGGAAAGAAAGACTGCGATGGTGGTATAAACGAtgtatacaaaatatatatatactagacAAATTAAGacttgttgttttttttcctttttaTAGCTTTTTTGTGGTTTTTCTTTTTGTGCTGATGAAGAGACACGAGGGCCATAGTTGGGACATTTTGTGGCCCATCCCTGTGCAGTCTGGGGTGCCTTTTTCCCCATCGCTGAGGATGGAGGAGCTAGCAACCAGCTGTAAACTGACCAGGCCCCAAGTCCCTGCTTCCAGACACAAGGGGCCCTACAGAGGACCACCACTGGGTCAGGGACTCACTGGCCTGTGGCTGCCTGGCTGGACATTGCTACTGGGATTTCAGATAGACAAACCCAATGTGTGGACAGGATAGGAGTGACTGGCTGCATTCTATGGCATTACTTGTGTGGAAGGGTTTGGAGACTGATCGCTTTTTGCACCTTTTCCCCTCACTTTTTCTCTCCAAccaacaacaaagaaacaacggAGACCCAGCTAATGTTTGCATTGACAGACACTGCCTCAACTTCAACCATTTCACTTCCATAAGCTTTCTAGCCTGCTGTTGATCAAgaaaaatttaaaatatatataaaatccatatatttttgatttatgtaaaaaaaaaaaaaaaaaaatgtgtcatgtGGCCTACTGTGTGTTTGTAAAGATGAGGAAGTTGCTGGTTTGTTGACTTTAGGAGTCAAACAGAGATCTTGATTGACACGTGAGGAAATCTACGTGGGTGTGTACAAACCAGCCACCCAAGGACTCTGGGTTTTTGGGCTAAAGGGATTCTAACTGTCCACCAAAGCCTCACTACTCGTTTCTCCTtgcacttctctctctttcttattagTTTATCCTATGTTCTGTCTTTCCTCACCCTCCTTAAAATGCAGAAACGGACTCTTGCAACAACTTGCCTTTTTATTCGATTTTTCTCAGATAAATAAGTGTGTTCTTTTTTTCCGTTTAGCAATTAGAAATTTCTAGGCAATGATGATGTTCACCTTTAGTTTATTTTTCAAATGCCGTGTTAATAGTGTAATATGGTTGTTCCATTGCGTTCTCTAAATTTCAATAGAAATTGCTTGTATGAAAAAATGAAACCAATGAAATGTGTTAAAAGGAGAAGTCAAGCATGATTTAGTGTGCCGGAGAGGGGTGAGGTGGCTCTCGGCCCAGGTTTCTGGCTTGGCTATGATCTGGTACACAAGCCTTGGTGCCATGTGACTTAGGTACTTGAATGTTGGGTGTGGTTGTATTTTTGCAATATTGATTTTCATGagattataaaaaaaataattgtgggggggttgaataattttttaGCTGTGCATGTTTTGTGTTGGAGGAGTGTGGGATGGGGGTCAGACGGGTGGGGTGGGGGTGATGGTCCTGGTTAATGGGTATGTTTAAGCTATAGTAGACACTGGGTTAAGAGGGTGTGGGGCTGCTTTGAATGTAATTCACCTTCACACTACACTGCACAGGCTGAGCGGAGGCTACAGATGCTTTCCTCCCCCTGGTTATTTGATGACAGAACTTACCCTGGCATTTAGTTTTCATTGTTTCATTGGAATATATAGGCTATAGAGTCCCACGTGGGGTTATATTAATACGATCTTTATTCTCACTCATCTTCCTCCCGAACTGGAGCAATTTGCTGGTCCCGCCCCCTATTACTAACTGTAATGATTGAAAAATGAGAATGTTTGTGATGTTTTGGGGGCTGGAAATGAACTTGGTGATTTAGTGCCCATGTTATTCATCCTGATTTTCCTTTTATCTTTTTTGTGTATCTACAAGTATTGATATATAGAATGGTGATCATTTCCACATTTTATTTATTCCTGATTTTAGCCTTTAACATGAGAGGTGCTGTATTTGAGAATGGTATACGGTTAtgatgtgtgtgtaggtgtggcaGGGTTTGCCCCGCCCCCTCTGCAGGGTCACCTGAGTGATGAGGGGGTCAGGGGTCGATCGTGAGTTTTCACCATACCTCCTGATAGTTCCCAGTATAACATTGTGATGTTTCAGACCATACCGTGAGCATAATCTTCAATAAAGGATGGATACATTTAGATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1922994 lncRNA upstream 3555 28474929 ~ 28475246 (+) True G1681066
TU1922990 lncRNA upstream 7828 28470475 ~ 28470973 (+) True G1681062
TU1922962 lncRNA upstream 8352 28469161 ~ 28470449 (+) True G1681035
TU1922951 lncRNA upstream 70421 28408079 ~ 28408380 (+) True G1681025
TU1922602 lncRNA upstream 177220 28299343 ~ 28301581 (+) True G1680703
TU1923020 lncRNA downstream 12731 28537824 ~ 28544583 (+) True G1681090
TU1923073 lncRNA downstream 112523 28637616 ~ 28638002 (+) True G1681137
TU1923100 lncRNA downstream 163599 28688692 ~ 28729427 (+) True G1681162
TU1923787 lncRNA downstream 252278 28777371 ~ 28777600 (+) True G1681791
TU1923793 lncRNA downstream 259181 28784274 ~ 28784491 (+) True G1681797
XM_021576362.2 mRNA upstream 146983 28316489 ~ 28331818 (+) False abcg8
XM_021576364.2 mRNA upstream 146983 28316489 ~ 28331818 (+) True abcg8
XM_021576357.2 mRNA upstream 185113 28225916 ~ 28293688 (+) False cep170aa
XM_021576370.2 mRNA downstream 376 28525469 ~ 28534588 (+) True slc3a1
XM_021576372.2 mRNA downstream 23400 28548493 ~ 28745581 (+) True camkmt
XM_021576373.2 mRNA downstream 323958 28849051 ~ 28852328 (+) True six3a
XR_002469936.2 mRNA downstream 367085 28892178 ~ 28936652 (+) True LOC110499307
XM_036956130.1 mRNA downstream 602646 29127739 ~ 29280630 (+) True LOC110499309
TU1922082 other upstream 1102982 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 1391338 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 1703121 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1822690 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1845603 26632135 ~ 26633198 (+) True LOC110499256
TU1923119 other downstream 192268 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 252913 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 932135 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 1047342 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 1049665 29574758 ~ 29576558 (+) True LOC110499316

Expression Profile