RNA id: XM_021576372.2


Basic Information

Item Value
RNA id XM_021576372.2
length 2643
RNA type mRNA
GC content 0.46
exon number 11
gene id camkmt
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 28548493 ~ 28745581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTAGCATGCTTTTTCCAGCAGCACCGGAGCAGTAAGGGTTTTACCGGTTGATGTCACGCTACCACTGTACTACTTGTCCTATTCTGTGATCAAACAGAGCCATACTCGCTTTATTAGACCGTGTGCTTTACACTGTAAATCATTtagaattgtatttatttttgcccAAAACACTGAAGACAGGATGGAAGAGAAGTTGACAGGTGAACCAGAAAAATGTGAATATCACGAATCGCCGTTGCCACTCTTGccagaaaataaagaaaaagagcTAATTACCAACCACCAATCCAATCGAGACCCTAATTGTGGAACCGACGTAGCTCGTGCAAGATGGACTCTCCTACGACAGGTGCTGAGACAGAAACAGCTGGACGGTGCAGACTCGGAGGTCAAGCAGGTGTCTGTCCGGAGATTCTCCTCCTTCAACCTGTTCAACAAAACCAGTGTCATGCACCAAGAGACAGATGACCCCTCCGAAGGCCAGTGGGTGGAATACACAAGTGCTTCCTTCCCAGAGTTCAGTGCCTTTCTCAGAGATAACCTCGGGCCCATCAGAGTGAATGAGGTTCTCAACAGTTTTGACAATACAGGGAATGTCTGTGTATGGCCCTCTGAGGAGGTGATGGCACACTACTGCCTCAAGAAACGCCACATGTTCAGgggTGCGGTGTGTGAGTTGGGAGGAGGGATGACCTGTCTAGCAGGGCTCATGatTGCCATTTGTGCTGACGTGAAGGAAGTTCTGTTATCAGATGGGAACGAGAAGGCTATTCAGaATGTGCGTGGAGTCATCGAGAGAAACAGGCAGGCCGGTGTCTTTGGCTCCACAGATGTTTCCAGCAGAGTGGTCAGGTGGGACTGTGAAACAGATGTCACAGCGCTGGAGGGACACTTTGACATCGTCATGTGCGCAGACTGCTTGTTTCTGGACCAGTACAGAGGCAGCCTGGTTGATGCAATAAGGAGATTACTGCGACCAGACGGTACAGCCCTGGTGTTTGCCCCCACTAGAGGAGACACTCTGGGGGAGTTCTGTCAGCTGGCCGAGGGGATGGGGCTCCAAGTCTGTCGCTATGAGAAGTATGATGAACAGGTGTGGGATCTCCACTTAAAGATGCAGATTGGAGGAAAGGAGGCATATGATGACAACATCCACTACCCTCTCCTCGTCACCCTGACCCGAGgagccagccccacccatcttcATCTCCTCTGAGACCCGGCTCACCATCCTCCCCTCGCTGCCCAGCCTCTTGCCAATCAGACtcccagggttagagttaggccGTCTAGCTTCCTGGCAGTCCTGCACACCAGTACTTATGCCACTGTGTCCCTGGCTCACATAGGGGTCGCGGTTGATGAGATAAAAGCTTGGGGATGAATTGTTTGATTTGTTTCCAGTATATATTTCTTGTATTAACTCCACTCACTGTGGTGAGTTCAGTATTACTATTACATAACATTACAGAATAGTTTTTTCTTGACTTTTGGAAGTTTTGTGGCAACGCtttgaagagtgtgtgtgtgtgttgtgatgatgacatgttgtgtgtgGCTGAATCGGTCTCTGATCACTTGCGACCTTGTTACTGTGCAATACAACAATGTGCGATGTGCAAAACCGAATGGTGGAGATTTCAGGTTTCCCTCGCAGCCTCAATGAACTGTCAACACTGAGAGGACTGAAGCATACATATAGAATCAGTAGATAATGTTCTGATGCGCTAACCAAGTAGTATGCCAACAACGTTTATGTATATGAGCATACCGGACAGTATCTTTCACTAAAAGTCTATGATGAACTTTTAATTTATTAATCAACAGGGTTCAGGTCACTTCGATCCATGCCCAGTACCCATCTGAACAAGTGTTTCTGAGTGCACATCAAACTGAAAATGTTCTTCTGATTTGTCATCTATGCTCTGCAGAAGTATCTTAAACCAAAGGTTCCATGGCAGGGTTCCACAGAGTTGAATGGCGATATGTGGTTCACTGTGAAAAGTGCTTCTCAGCCAATACCTCTCAGGTTGAGTTTCCCAAAAGCTTCGTAGGACCCAGATCTTTAGACCATTGCCTACAAAGCTTCCAATTGCCTCCAATGGATTTTCGGAGATCTTAATGCTGCGAAGCTTTTAAGAAACTCACACCTGGTCTCTTGCTCAATGCGCTCAGCTCTATAAGCCAAGACCTTCTACACTGTCTCCAGCTGAAACTGTGTTACTGTGAGATTAACATGAACAACATGATTCCACAAACTCACTGCTATATTTGACGTTTGTCCATAAAACGCAAACATCAAGTATTATTTATACCCACCACTCAGCATTATGGTCTTCAGCTGACTCTGGTCTACCGACGCTGTGCTCTTTACATCCACCAACCTGTACTCTAACCACTATTGTATTAGAcatggattgattgattgttttattAGAGTCTCAGGTGGTTTTAATAACTGTCCACTAAAAACATACTGCTATACATTACAGTCCTCTACTTTTAGAActaatgttctgttctgttttaaTAATAATACCCTCCGAAAATAACATTGTCGTAGTTGTGATATAAAAGTTTTAACCCtttttggaccccaggaagagttcatggggatcctaataaatacaaaaGAACATG

Function

GO: NA

KEGG:

id description
K18826 CAMKMT; calmodulin-lysine N-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1923020 lncRNA upstream 3910 28537824 ~ 28544583 (+) True G1681090
TU1922994 lncRNA upstream 73247 28474929 ~ 28475246 (+) True G1681066
TU1922990 lncRNA upstream 77520 28470475 ~ 28470973 (+) True G1681062
TU1922962 lncRNA upstream 78044 28469161 ~ 28470449 (+) True G1681035
TU1922951 lncRNA upstream 140113 28408079 ~ 28408380 (+) True G1681025
TU1923787 lncRNA downstream 31790 28777371 ~ 28777600 (+) True G1681791
TU1923793 lncRNA downstream 38693 28784274 ~ 28784491 (+) True G1681797
TU1923816 lncRNA downstream 63166 28808747 ~ 28809006 (+) True G1681820
TU1923832 lncRNA downstream 83100 28828681 ~ 28828880 (+) True G1681835
TU1923843 lncRNA downstream 89336 28834917 ~ 28835235 (+) True G1681846
XM_021576370.2 mRNA upstream 13905 28525469 ~ 28534588 (+) True slc3a1
XM_036956118.1 mRNA upstream 23400 28478801 ~ 28525093 (+) False ppm1ba
XM_021576373.2 mRNA downstream 103470 28849051 ~ 28852328 (+) True six3a
XR_002469936.2 mRNA downstream 146597 28892178 ~ 28936652 (+) True LOC110499307
XM_036956130.1 mRNA downstream 382158 29127739 ~ 29280630 (+) True LOC110499309
XM_036956132.1 mRNA downstream 540304 29285885 ~ 29353539 (+) False LOC110499310
XM_036956131.1 mRNA downstream 540305 29285886 ~ 29356101 (+) True LOC110499310
TU1922082 other upstream 1172674 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 1461030 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 1772813 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 1892382 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 1915295 26632135 ~ 26633198 (+) True LOC110499256
TU1923788 other downstream 32425 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 711647 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 826854 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 829177 29574758 ~ 29576558 (+) True LOC110499316
TU1928807 other downstream 3908773 32654354 ~ 32661648 (+) True G1686317

Expression Profile