RNA id: XM_036956125.1


Basic Information

Item Value
RNA id XM_036956125.1
length 3464
RNA type mRNA
GC content 0.54
exon number 21
gene id srbd1
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29026199 ~ 29123692 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCagctggtggcggtaatgcaccattaacattggatgccaaccgccgttaaacccCATCGAAGAAGAAGACTTTAAACTGGCCATGCAACGGCGAACTCGCACAGTTAAAGTCTACACAGAAAAGACAACAGATGGAGATTCCGATGAACTTAGTCCACACACTCAGTCAGCGAGTGAAGATGAGACTGAAGAATGGCAGCCAGAATCCAAGGCCCCCAAGAGGCAGCAGAAAGCTCAGCCAAGCGAGAAGAAACCAGCGGTGAAGAGGCAGGCTAAACCTAAAGAGCCCAAGGAATCCAAACCCAAAGTCCCACGCAAACCAGTGGAGAGGAAGCCCCGAGCTCCCAGAGCCCCTAAAGCTCCCAGAGCCCCTAAAGCTCCCAAACCCCCTAAAGCTCCCAAACCCCCTAAACCTCCCAAACCCCCTAAAGAACCCAAACCCCCTAAAGCTCCCAGAGCAACAAAAGGAGGTAAAAAGCAGCAAGCTCTGTTAGAGGAAGAGGCTGGAGGAGCCAATCAGACTAACTCCATCTGTGACGCAGCGGAGTCACAGCAGTCAGGCAGGGTCAAGGAGGAGAGACTGTCCTTCATTGTGCCTGATGGATCCTGCAACGACAACATGTCCAGAGCAGGGGGCAGGTGGTCCGAGGGGCCGTCCTCCAGCCATCAGCCTTATGGGGTGAAGAAGGAAGAGCCGGAGGAGGACTTTGCGTTTGATGAGCCTTCTCTGAAGAGACAGAAGACCAGCAGTGCCCCTCAGGGCAGGCCCACCAGACTGCCCACCTCAGGAAGAGCCTTTGGAGAAGACCTGAACATGAACTGGGACCTTATTCAATTGCTGTCTGAGAGGACAGGAGTGGAGCAGTGGGTGTGTTTGAACATTTCCCAGCTCTTCAGAGAGGAGAAcaccattccctttatagtgcgctACAGGAAAGAGATGATCAACCACATGGACGCAGATGCCGTGAGGGACGTGCAGCTGGTGCTGGAGGAGATCCATGCACTGGCGAAGAAGACGCAGACTATCAGTCAGACTCTTAAGAAGGAGGGAGTCCTGACTGCTGAGCTGGAACAGGCTCTGAGGAACTGCAGGACCGCTGATGAACTGGACCACGTGTATGCACCCTACAAGAAAGGCAGCAAGCTGAGCAAGGCCTGTCGTGCCAAGCAGCTGGGACTGGAGTCTGCTGCCCAGGCCCTGCTACAGAGTCCTCGCACTCTGGACCTGAGAGCCTGGGTCAAACCTGGGACTGAAGGTTTGTCCACTGTGGAGGAGGTGTCGACCGGAGTGGAGCAGATTTTGGCTGATATGATTGCTAAAGACGGAGAGTCCCTGACCCATATAAGATCGCTatgtGATAACAGCATGGTGATGCTCCAGTCGTCTGTGTCTAAGACAGCCCTGAAGGAGCAGCAGAAAGAGGGTCACCAGGGGAAGCCCAAAGACATTGACAAGTTCCACCTGTACTGTGACTTCACCTGCAGCGTGCAGCGTATTCAACACCACCAGACCCTGGCCATTAACCGAGGGGAGAATCTGAAGATTCTGACAGTGAAGGTCAACATCCCTGACTGTGTGAAGAGCGACTTCTGTGGATGGTGTCTCAACGTCAGATGGAAACCCAATGGTTACACTAGAGAGGAGCTGATGAAGATCTTACGAGACGCAGTGGAGGACTCGTACAAAAGACTCTTATTTCCCCTGCTCAGCAGAAGCTACAGgacGAAGCTGACGGTTAGTGCGGAGAAGGAGTCCATAGCCATGTTTGTGCGCAACTTGCGCCAGCGTCTGTTGGTGTGTCCTGTGAGAGGCCGTGTCATCATGGGCGTGGACCCAGGGTTCAGACACGGCTGTAAACTGGCCATCCTCTCCCCTACCAGTCAGATATTATTCACAGATGTGGTGTACCTCCATGGTTCACAAGGGAACAGAGAGGCAGACAAACTGCGCCATCTGATGATCAGATACAGCTGTAACACGGTGGTTATCGGCAACGGCACAGCCTGTCGAGAGACTGAGGCCTTCTTTGCTGACCTCATCAGCCGACGCTTCTTCCAGCCTCTGGACGTGTCATACTGcatCACCAGCGAGGCAGGggcatccatctacagtgtgagcCCAGCGGCAGTGAAGGAAATGCCAGATCTGGACCCGAACCTGAGGAGTGCAGTGTCCATAGGGAGACGAGTTCAGGACCCGCTGGCTGAGCTGGTGAAGATTGACCCGAAACACATCGGCATTGGAACCTACCAGCACGATGTGTCCCAGAGCTCTCTGAAGGCAGCCCTGGACGGGGTGGTGCAGGAGTGTGTGAGCTTCGTGGGAGTGGACATCAACATCTGCTCAGAGACCCTGATGAGacacGTGGCAGGTCTGAATATAGGGCGTGCAAAGAGCATAGCAGAGTGGAGGGAGACGAACGGGCCTTTCATGAACAGAGATCAGCTGAGACTGGTGAAGGGCCTGGGCCCTAAGAGCTACCAGCAATGTGCCGGCTTCATCAGAATCAACCCTCTAGACCATCTCAacaaccacagTGATGCAGCAGGGGGTAACTCAGCCCAAGCAGCCCAGGAGAAGCCTGCAGccaaggggaaggggaagggaaagACCAAAGCCTCAGCTGCTGTACCTACCCTGCCCAACCCTCTGGACCAGACCTGCATCCACCCAGAGTCCTACGCTGTGGCCAGGAGtTTCCTGTCCCTGGTAGGGGGTAGTGTGGACCAGATGGGCCGGCCAGAGCTCAGACAGTGTGTGGAGGCCAGTGTGAAATGTCAAGGTCTAGAAGCCCTGGCTGAAACCCTCAACACCaccccagacacactgcagctCATCATAGACGGACTCACCCAGCCTCCTGGCTTTGACATCCGCCAAGACTTCGAGAAGGCAGACTTCAAGCGTGGCATTGTGTCTATGAGTGACCTGAGAGAGGGGGTGGTTCTGACGGGCCGGGTGGAAAACGCCACTCTGTTCGGGGCCTTCGTGGACATCGGAGTGGGCCGCAACGGGCTGATCCATAAGAGGTACATCACCCCAGACAAGCTGCCAGCTGACCAGAGGAGACGCAGCCTAGCCCTAGGCCCCGGGGAGAAGGTGGAGGTCAGGGTGCTCAACGTGGATCCTCAGCGGGGCCGCATTGGACTGGACCTCATACGGGTCCTCAGATAGACCAGTGTGGACTGGACCATGGCTTTGCACTTAGGTCATGTTCAGtagaaatgtcaaatgttttaaaaCAGGAAAAGTACTACCTGAACACAACCCTTCTGTGTAGCCACTCCTAGAACATCTCTGTGACAGAAGATGCTgatatgttctgttctgttcatgtAGTTTTCAGTATGTTGGACCAACTCTTTATGCCTCAGTTTGTATTATTTTAAAAACAATGTTTAAACATGTTTTGAGAAATGTATTAATAAATGGAAAATTATCAGCCAAAGTGATAAAAA

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1924019 lncRNA downstream 62459 28963474 ~ 28963740 (-) True G1682018
TU1924013 lncRNA downstream 66447 28959416 ~ 28959752 (-) True G1682012
TU1923953 lncRNA downstream 138433 28887475 ~ 28887766 (-) True G1681952
TU1923894 lncRNA downstream 150509 28875487 ~ 28875690 (-) True G1681896
TU1923882 lncRNA downstream 159785 28866150 ~ 28866414 (-) True G1681884
TU1924438 lncRNA upstream 97688 29221380 ~ 29223046 (-) True G1682373
TU1924446 lncRNA upstream 111086 29234778 ~ 29268082 (-) True G1682380
TU1924456 lncRNA upstream 123120 29246812 ~ 29247310 (-) True G1682389
TU1925203 lncRNA upstream 234070 29357762 ~ 29358751 (-) True G1683057
TU1925242 lncRNA upstream 236950 29360642 ~ 29360869 (-) True G1683096
LOC118941999 mRNA downstream 79460 28941146 ~ 28946739 (-) True LOC118941999
XM_021576375.2 mRNA downstream 134614 28888248 ~ 28891585 (-) True six2a
XM_021576374.2 mRNA downstream 134615 28888248 ~ 28891584 (-) False six2a
XM_021576371.2 mRNA downstream 477790 28536167 ~ 28548409 (-) True prepl
XM_036956116.1 mRNA downstream 619537 28333865 ~ 28406662 (-) True lrpprc
XM_036956136.1 mRNA upstream 272092 29395784 ~ 29403494 (-) False LOC110499311
XM_021576382.2 mRNA upstream 272092 29395784 ~ 29404581 (-) False LOC110499311
XM_036956135.1 mRNA upstream 272092 29395784 ~ 29404581 (-) False LOC110499311
XM_021576380.2 mRNA upstream 272092 29395784 ~ 29404585 (-) False LOC110499311
XM_036956133.1 mRNA upstream 272092 29395784 ~ 29404585 (-) True LOC110499311
TU1923643 other downstream 490390 28535295 ~ 28535809 (-) True G1681658
TU1923599 other downstream 552174 28473285 ~ 28474025 (-) True G1681623
TU1923194 other downstream 1161371 27860855 ~ 27864828 (-) True fa36a
TU1923198 other downstream 1161405 27860741 ~ 27864794 (-) False fa36a
TU1925354 other upstream 417623 29541315 ~ 29546317 (-) False LOC110499315
TU1925344 other upstream 417656 29541348 ~ 29546317 (-) False LOC110499315
TU1925348 other upstream 417656 29541348 ~ 29546317 (-) False LOC110499315
TU1925350 other upstream 417656 29541348 ~ 29546317 (-) False LOC110499315
TU1925352 other upstream 417656 29541348 ~ 29546317 (-) True LOC110499315

Expression Profile