RNA id: XM_036956133.1


Basic Information

Item Value
RNA id XM_036956133.1
length 3136
RNA type mRNA
GC content 0.41
exon number 9
gene id LOC110499311
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29395784 ~ 29404585 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTTTTCCCATGTGTCCCACTTGGGAGGTATCAGAATCAACCAGTAGGAAGCACTACGCATATAGCTTACGTTCATTTGAACTCTGAGGTCCCAAGTTTCCAATAGCACATGAACGCAACAATGGTGCGCTCAAGACAACTCTGACGCCTTGATCACACCGACAACAATTGTgtattttggtacaccagaagtacattaatttccaatggaacgctgtgCTTGCATTGCAGAAACAGTTgtagtgcgttctgtgtggtgcatacgttgGATTTATCGATGCGTAcatggcttgacagaaatggtagcagaagCTCTGCATTGGCTGACCATGGCCACTCAGAGGACACCCCTGGTCAAAGACTTTAACCACTTCATTACCTGCTACCTGTGCAGAGGTTACCTGATCAAACCCACCACGGTCACTGAGTGCCTGCACACAtTTTGTAAGAGCTGTATCATCCAGCACTTTGAAGACAGTAATGACTGTCCCAAATGTGGCATTCAAGTCCATGAAACCAACCCTCTAGAGATGCTAAGGTTGGACAATACTCTTGAGGAAATCATTTTCAAGCTTGTACCTGGATTACGAGACAAAGAGGAACAGCAGGAGATTGATTTCTGGAGGAAGAATAAATCCAAAGAAAATGGACAAGGAGACTGCCTTGGGTCTAGGCTTGGGCTCAGTGATGATGAGGATGGTGATGAAGATGGTCAGGATTATCACAGGAGTGACCCCCAGATAGCCATCTGCCTGGACTGTCTCCACAACAATGGACATGCTGCAGACAACAcagtaaagTGTTTAATGAAGAAGTTCCTTCGCTGCTCTAGTCGAGTCACGGTGGGAACCATCAAGAAGTTTCTCAGTCTAAAGTTAAAGCTTTCAAGCTCTTGTGAGCTGGATGTGCTGTGTAACGGGGAGATCATGGGTAAGGACCACACTCTGGAGTTCATCTACATGACCCGCTGGAGGCTGCACGGTGACAACACATATCCCATGGTCCTGGAGTACAGGCCACGGATAGACTTCGGCTGAACAAAGCCCTTGAGAAGCCTTCATCGACAAATAAAAGCAATGACTGGATGTGCATCAAACTGaggccagggactcaaatccttcCCAACATTTTGAACTTCTGTTTAATTTTGTTGTGTCCTTCGTTGTTGAACATTCCGTGCTTGTGGCCAAAGTGATCTTCAAGACGAGTAACTAGCGAGACAAGCTTAGCTGAAACATAGATGTATGAATGTATCCAAATGGTATTTATTAGCCAGGTCCTCTGGTATCCTGGTAACCCAGCCAATGACAAGGATTGACCTGCATCGACATGATGAATACAAGTTGGTGTGTACAGAaaatgaaatggaaagagtaATAGGGAGGAGTCAAGCAACTCCAAGGCCTTACAACGGATGCCTGACTGTTTCAACaagaaaagtttttaaaaattaagccatttttttttttcattttataaAATGCACATAACATATCCACAGATTTGCCCACAATCAATCAATTGACCGAGCACCTTAATGTTGCCAAAAGGTTTCAGAGTCTAAACCGAAGCTCATTCGTCTTCATTCTGTCCCATGCTCAGTTATTATAACCAGTCTGACATGTTGCTGAAATCAACAAACACTCTCTGGCAGAGGCTCGGGAGCCTGCGTGATGGGAAGAGAAACGTTAAGCCTCTTtttaacaaacaaacacacacacactcactcaaccCAAACTGCAGTGTGATTGCCGTGGCTCCTGCCAATCTCAGACCTGCACTAATAGCTTTTTTTGGCACCAGTCTGAGTGACCAGGTATTACATTTTAGTTTTTCAGATTAATCTTTGTATCTTTTTAGGCTAGAGAGATACTATCTTACATGTTTTGAAGGGAAACCAGTGGTGTGTACATTTCATATTGTTACTAGACCTTTGCGCTATAAATGTGTTTTTTGAAGTACATGACATTACAACATGGTAGTACGAGATATGAATTATGGATCTTTGATCACAGAATAGTATTGGGCACTGTAAGAACTGGTTGGCATAAGGCTTATTGTATTAGCGTTGAAGTGTAGTGTACTGAAGCTGACTCACAGTGATTCGGTATAGAGAGTATACAGTGTCTGCTTCATTACCCAGTCATCTCAAGTTTAGCCTTTTAAACTGTaatctatgttgatgtggtttaTATGTGAAAACCATTTGAGGTGTGTTCCTTGCAGTGAAGCCAACCTGTCCTTGTGCTGACAAGGATTAATTTTTTTtaagacagaaaaggaaacatgTACATATTATTATGGTTAAAGTTTTATGCTGCTTAGAGTAATAtattatatttttaaatgtacccATGCCTGAGAATCATTCTTGAGATATTAGAGCTGTAGAAATATTGTTCATAACTGTACTTGATTTATAATAATTATTCATGAataaattaaatgtttttattttacttaCTGTCTATTGACTTGACTGCCATTGATGACACCGTTTTTTTGGTTTGCTTGGGCTTTGGGCCTCTAAGTCAGGAGTCAGGACAAAGGCCTAAAGCTTTAACCAATACTCCTTTTTGTCAAATTAGCAACTTTTTTTTCCCTAGCCCGTATTCTGTTAGCTCTTATGAACTTTGTTTTATAGGTTCATTACAAAGTGATCCTGCCTCCTGCCCAAACTGGTCAGACCAGTTGTAACGATGATAAATTCCCTGATATGTTTATCTGACTGGACAGGCAGGAGGAAAAGTGTTTCTAGATGTGAAAAGCGGACAGTATGTGACATACATCTGCCCAACTTCAACTGGAGAGAAAAACAGGGTAGGAATGCACACAcggctgcttctctctctttgtttgtccTTTCTGCTTTCCCTGTATGCTTATCTGGGAGCTTTTAAGGTCAGATACTGTATACATGTATGTAGGCCAGAGTTCCCTACAGGCTTCATACTGTACGTACATTCACTCACTCATACCAGCATTTGGGTCTGAAGGATTTAGGGTACATTGACTGTAAGATGTCTCAAGAGTCCTGAAAACCCTCTATACAATGTCTTTTGTAACTTTGTTTTTATTTTGGTGTTACGAAACTAAAAAATGACCTTTAATATATTAAACATAATTGAGATCTCA

Function

GO: NA

KEGG:

id description
K11489 PCGF5; polycomb group RING finger protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1925258 lncRNA downstream 16013 29379503 ~ 29379771 (-) True G1683112
TU1925243 lncRNA downstream 34627 29360925 ~ 29361157 (-) True G1683097
TU1925242 lncRNA downstream 34915 29360642 ~ 29360869 (-) True G1683096
TU1925203 lncRNA downstream 37033 29357762 ~ 29358751 (-) True G1683057
TU1924456 lncRNA downstream 148474 29246812 ~ 29247310 (-) True G1682389
TU1925318 lncRNA upstream 59612 29464197 ~ 29464731 (-) True G1683165
TU1925335 lncRNA upstream 72755 29477340 ~ 29478249 (-) True G1683175
TU1925364 lncRNA upstream 101947 29506532 ~ 29508261 (-) True G1683188
TU1925415 lncRNA upstream 129067 29533652 ~ 29536389 (-) False G1683225
TU1925416 lncRNA upstream 129067 29533652 ~ 29536389 (-) True G1683225
XM_036956125.1 mRNA downstream 272092 29026199 ~ 29123692 (-) True srbd1
XM_036956129.1 mRNA downstream 272120 29026199 ~ 29123664 (-) False srbd1
XM_036956124.1 mRNA downstream 277510 29026199 ~ 29118274 (-) False srbd1
XM_036956128.1 mRNA downstream 277510 29026199 ~ 29118274 (-) False srbd1
XM_036956127.1 mRNA downstream 278631 29026199 ~ 29117153 (-) False srbd1
XM_036956143.1 mRNA upstream 136754 29541339 ~ 29571026 (-) False LOC110499315
XM_036956141.1 mRNA upstream 136754 29541339 ~ 29571031 (-) False LOC110499315
XM_036956144.1 mRNA upstream 136754 29541339 ~ 29571033 (-) False LOC110499315
XM_036956145.1 mRNA upstream 182978 29587563 ~ 29600822 (-) True LOC110499317
XM_036956146.1 mRNA upstream 202121 29606706 ~ 29746328 (-) True itga9
TU1923643 other downstream 859975 28535295 ~ 28535809 (-) True G1681658
TU1923599 other downstream 921759 28473285 ~ 28474025 (-) True G1681623
TU1923194 other downstream 1530956 27860855 ~ 27864828 (-) True fa36a
TU1923198 other downstream 1530990 27860741 ~ 27864794 (-) False fa36a
TU1925354 other upstream 136730 29541315 ~ 29546317 (-) False LOC110499315
TU1925344 other upstream 136763 29541348 ~ 29546317 (-) False LOC110499315
TU1925348 other upstream 136763 29541348 ~ 29546317 (-) False LOC110499315
TU1925350 other upstream 136763 29541348 ~ 29546317 (-) False LOC110499315
TU1925352 other upstream 136763 29541348 ~ 29546317 (-) True LOC110499315

Expression Profile