RNA id: XM_036956139.1


Basic Information

Item Value
RNA id XM_036956139.1
length 4492
RNA type mRNA
GC content 0.43
exon number 19
gene id tmem87b
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29510861 ~ 29536419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTCGCCCCAGCAATACCACATGCTGAAAACATGGCTGCTTCTGTACGGGTGAGGACGTGGAACACATCTAGCTCAGTGAAAACCTGGCTCCTTTATTTGGCAGGGATTATTTTACTAGGAGATGTAAATAGCGGGGTGATGGCAGCTCCAGAACCAGGACAGTGGAGAATTACAGTTGTCAATACCTCAAGACCATTGCTTTTGAGGAAATCTATGTATAAAGACACTGATATCAAATTGAAAGttgtgTCCTTTGGATGTCCAGAGGAGATGACTTTTACCATTCAATGGTACTTGAAATACTACCCCTGTCACAACGAGTTCAATAATATTGAGGAAATGTATGAGAGGACGCCACTGAGTCGAGGACAGAGTATGGATCCTAACCCTCTAGGACAAGGGGAATGCATTGAGCACAAGCACAAGCCCTTGACCTGCAACAATGACCTGCGATACTTCCCAATGCTAAATAAAGCCAAGGTGGAACCACGGACAGTTGTCCCGCCCATGGAAGGGGCAGCACCGGGTTCGGATGAGAACTACACCAAATGGACGATGGAGGAGTACGACAAAGTCAGCGGTGTGAAGAATTCCAGTGTGTCACTTAAAGATGATGTCATTGCCACCACGTGGAAGGATGGCCCCTATCTGTTTGTGGTGGTGATTAAATCTAACAAACAGGAAGCCAACTGGAATTTAACTGTAAACGTTGTAATGAAAGGAACTCACGGCTACATCTCCGTCACTGAATGGCCTCTCATGATTTTCTAcatggtgatgtgtatagtgtacatCCTGTACTCGTTACTCTGGTTCATGTGGGCTGCCTGTTACTGGAAGGACTTACTGCGGATCCAGTTCTGGATAGCTGGAGTCATCTTTCTGGGCATGGTGGAGAAGGCTGTGTTCTGTGCTGAGTACGAGAACACCAACGGTGTCGGGGCAGCTTCTCCAGGCCTGTTGATCTTTGCTGAACTCATCTCTGCCCTGAAGAGAACCCTGGCACGGCTGCTGGTCATTATTGTTAGTCTGGGATATGGTATAGTCAAGCCTCGACTGGGTACTGTGATGCACAGAGTGGTGGGACTAGGCGTCCTGTATTTTGCCTTTGCTGCTATCGAAGGTGTGCTTAGGATCACTGGGgCGAAAGACTCTGACCTGGCTCTGTTGGCCAACATTCCTCTGGCTCTGCTTGACTCCTCTCTATGCTGGGGGATATTTGTGAGCCTGGCTCAAACTATAAAGACACTGAAGCTGAGGAGAAACCCAGTCAAACTGTCTCTCTACAGACACTTCACGAACACACTCATCTTTGCCATCATAGCTTCAATCATTTTCATGGTGTGGACGACAAAAAAATTCCGGCTAGCAGATTGTCAGTCGGACTGGATGGAGCTGTGGGTAGATGATGCCTTCTGGAGGTTCCTCTTCTCCATCATACTGCTGGTTATCATGTTCTTATGGAGACCATCTGCTAACAACCAGAGGTATGCATTCACTCCTCTGATGGACGACTCTGATGATGAGGAGATCGAGGACTTCCTGGTGTCAGCTAATTTGGCTGACGGCATAAAGTTGAGAGCAACCAACTCCAGGATTGAGACAAACGGTTCTGCCAAGCCTTCAGGACCCAACCCGGATGAAGACATGAAATGGGTGGAAGAGAACATTCCTACCTCTTTATCAGACGTAGCGTTGCCTGTCCTTCTCGACTCGGATGAGGAAATCATGACCACAAAATATGAAATGTCCAAGATGGAGTAACATGGAAAGTCTTCCTACCACCCATGGTGGATGCAGAGCATCTCTTCCTCGGGTTTCTAATGCATGGCATGGaatagacagatcatctggagcaCGACACCTCTCCAATCCTAGTCCTAGGGCTGTTTAGACTGAGACTCAGACCTCTGATCCTCTGTACAACACTACTGTGGCTTAACGCAACACCTCTGACTTGCCGATCAGCAGGGTCCTATTCATTGGGCATTAAATGGAAGAAAATTGATTAAAACGGGGAGGTACTACTtcaacttgtccaataagaaatactTGTTTTAGTTTTCCTTTCCAGAGTGTTTGTTACGGTGTGCTCTAATGTATTCAACCGATGTTATATGTGGGCAACAGAAAATCTCACCTGCAATACTCCTATTCTGTgtgtcccaaagggcaccctgttctctatatagggcactgcttttgaccatggcccataagtttttatagggaatatggtgccttttgaccatggcccataaggttttatagggaatatggtgcctttTGGGATGTAACTTATGAGACTTCTGTTCCAAAAAAAACCAGCTTCACTTTGTTAAATGCTGTATGTATTTATTaactttttttctctcactgAACTTGACTTTATAGGAGAAAGGAACAAGCTGGTATATTATTTCAACACCAATTGGACACACTGCATAATAACATTACCAATATTATTTTGATAGTTGATAACATTCAGAGGTGTATAGTAAACATTATATATTACACTAAGTGAAGCTTTATTGTTTCCTAACCAAAGTATAATGTGATGTGGGAGAGTTTGCGTTTTTGTCTAGGCTGGGACACAGGATTCATACATGCAGTACTAAACAGAAGTGTTCTTGATAATGTCAGTGTACGATTGCAGGACTTGAGGTCTGTTCAGGAGGATGTAACATTACAGAATGTTTAGATAGAAATACAAGGAATAGAGCTGACATGATTCACTATTCTATCTACTATCAATGTTCAGAAAGTTTACATCACTGAATGGACCCCTGAGGTTGGTAGAGGCAGTACTGTAATTGAGGCTTACGTCATTGAGGAgttgtgtgtttgaatgtgaGTGGAGGGAATctttagcctggttccagatcagcAATAACAGCGTTACAAtggccataggagttggcaagacggcacaaacacatctgggatcaggctaggaAGTCCTCTTTTTCCGCTAGTCAAATAAAGAGCAATATTATATACGTCCTATGACCTTGTAAGGTTTACTTACACTCCTCTAGTACCCTCCCTTTATCTGTTTTACATTGCTTGTGcaccaaatggtaccctattccctatagcagggGTGCCAAGCTCATTCCATGTAGGGCTGAGTGTCGGAAGGtttgtttttttcctttcaattaagacctagacaatcaAGTACAAAGGAGGAGTGAAAACCCACAGATGCTCAGCtttccatggaatgagtttgtaAAGAGtgcccaatatagtgcactactatccCTATGCgccctggtataaagtagtgtgcactatataggggatagggtgctatttgggacaaatTGTTATTTATGTTTAAGTGTACTTACAACTTGctatatttagtttagtttactcTAGGTACATTTATGGGGATGTTGTTATTGTGTGATAAGTtttaatgttatttctgatttgtTGTAATCTGTCTAGCTTTTTCTAAAACTCTTTTTAAAGGACAAACTATTGGAAATTACTCTTGTCTCGTTGATTAATTAATGCATTTTGTTTTGCTGTTGAAACGGGGATGTGTCTCTCCATCTTATGTTCTGTAATGGTATAACACTTTCAAAGTACAGATTCTTTGTGCACCATTTCTGTAACGGCAATCGGTACTGGTGCCAGTTAGATGGTGCTGAAGTCTTCAGCTGTATAAGAGACTGGGGGGGGGTTGTCTCGTGTGGACATTCCCGTTTCCAAATAGGATGATGTTGTATTGGTCCGTGTTATGCTCTGCAGCCTTCACCTAGGTTAGGGAGTTATGATTTCACTCACAACCTCAACTATGTCCTAGGACCTGTCCAgaaacattccctattccctacccACTAGATTGTCTTACATCTGTCCAATCCTTGCATAGGTAGGGTGTAGTTGTCAGTTTGGGAATCAGGCCCTAGTATATGTAGTGCTTTCCCTAACTTGTATAAATTCATATTAAGATACTTCCTCTTACTCAGACCCTGACATTCTTCTCTTTATGTTCAATGTTTCCCTCTAATGTAGCCTACAACTGAATGTCTGTCTCAGAGTTGGTTATTTTCACTTAACAGACTGGTTTTGTCTGACTGTTAgtactgttattatattatttacTGCCTGATACCTTTTTTGGAAGGGTTAACATCTTCAATGCTATGCTTGAACTTTTAAACACAGGGCCTGTAGTCATAAAGCGTCGCAGtacgagtgctgatctaggatcagtttgaccTTCTAGATCGTAATGGACACCTGATTCCGATTGGCACGCCTACTTTGAGATGCTTAGTAATGTACATATGGCTCCAGATCAATGTGGCTTGTTTGTCCTTTTTATTTCTGttggcagagcagagagagaacagcacCATGTTATTAGTATGCCAAACTGTAAATCTGTATTTATGTTTGTTGAAAATCTTTGTTTTCTGATCTATTTCAATACGATGGTTAATttaattgtaaataaaaatgttttacaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1924497 lncRNA upstream 114678 29395815 ~ 29396294 (+) True G1682418
TU1924520 lncRNA upstream 128371 29382396 ~ 29382601 (+) True G1682440
TU1924507 lncRNA upstream 147763 29362836 ~ 29363209 (+) True G1682427
TU1924505 lncRNA upstream 149956 29360733 ~ 29361016 (+) True G1682426
TU1924204 lncRNA upstream 313792 29196652 ~ 29197180 (+) True G1682169
TU1924572 lncRNA downstream 4933 29541352 ~ 29543464 (+) True G1682489
TU1924633 lncRNA downstream 53431 29589850 ~ 29590169 (+) True G1682544
TU1924634 lncRNA downstream 53914 29590333 ~ 29590539 (+) True G1682545
TU1924635 lncRNA downstream 54773 29591192 ~ 29591591 (+) True G1682546
TU1924658 lncRNA downstream 63976 29600395 ~ 29600596 (+) True G1682553
XM_036956137.1 mRNA upstream 2676 29470031 ~ 29508296 (+) True mertka
NM_001124326.1 mRNA upstream 52473 29437357 ~ 29458499 (+) False lhcgr
XM_021576384.2 mRNA upstream 82113 29423694 ~ 29428859 (+) True ankrd1a
trnaa-ugc-146 mRNA upstream 120579 29390320 ~ 29390393 (+) True trnaa-ugc-146
XM_036956131.1 mRNA upstream 154871 29285886 ~ 29356101 (+) True LOC110499310
XM_021576390.2 mRNA downstream 35978 29572397 ~ 29588171 (+) False LOC110499316
XM_021576400.2 mRNA downstream 489206 30025625 ~ 30060187 (+) True msh6
XM_021576403.2 mRNA downstream 657850 30194269 ~ 30217647 (+) True LOC110499323
XM_036956153.1 mRNA downstream 683367 30219786 ~ 30241466 (+) True LOC110499324
XM_036955550.1 mRNA downstream 1903858 31440277 ~ 31440996 (+) True LOC118942000
TU1924556 other upstream 53051 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 732563 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 784477 28717361 ~ 28726495 (+) True G1681180
TU1922082 other upstream 2135153 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 2423509 27084426 ~ 27087463 (+) True G1679823
TU1924589 other downstream 36016 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other downstream 38339 29574758 ~ 29576558 (+) True LOC110499316
TU1928807 other downstream 3117935 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 3640874 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 4789418 34325837 ~ 34326254 (+) True G1687675

Expression Profile