RNA id: XM_036956144.1


Basic Information

Item Value
RNA id XM_036956144.1
length 3376
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110499315
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29541315 ~ 29571033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGAACAGAacattggggagagagagaaacccgaCTGGGGTATTGGTGGGAGGGATTATTCCTAGTACATCCATCGCTTTTCAAAGTCTACATTTTCAGTTAGGTTAAGCAGTAGATTCAGGCTCACTCTCATCATAGTCTATCCAAGAGCGCACGGACGGGAACGGGAGCGCACAGCATCCCAACCGTCGCTCGTACCACCTGATGAGAAGTATCTTAGTTCCCATCCTGAATCCACACACTGCCAGTTCAGTTGCGCAAACGCTGCGGAGGAGCTTCGGAAATCGAAGTTGAGTTCGTTGGTTTTCTATTCTTTAAACACCTGACTAAGTTTGACCATTTGGAGAAAAAATCGGATATCATACCAACACCAATCCAGTAGGAATTAAAGTTATGGCACTATCCATGCTGCGCAGCGGTTTGCTTTTTCTGTGTCTGACAACTATCCATACCTGCAATGGTGGCGGACAGaaCTGCATGGATAAACACCAGGTGGTTGGTGTTCTCCGTCAGATGGAGAAGTTTCTGAAGGGACAGGAGATGAGATTCACAGAGGGACTACGCATCATGAAGTCAAAACTGGCAACCCTACAGAACTCTGTCTCCAAGTTGCCTCAGGCCGATCAGTCGGCTGATGTGAGTGAGTGCTCCAGTAACCCATGCCAGAACGGAGGGACCTGTGTAGAGGGAGTCAACCAATACAAGTGCACCTGTCCACAGAGCTGGAGTGGATCCAGCTGTCAGCACCAGACACAGACAGTGGTGCACAGGCCCTCTCCGGGCCGCCGGGCGAAGTTTaagctcctccctctccctctgtcgcgTTCAGCGCCACCTGAGTGGAGCGTCATGAACGACCCTGCGTTTAGCCGACGACCCCGCTGTGCCAAGGTGGACAGAGCCCAACACTGCAGCTGCGACGCTGGCTTTCACATGAGTGGCACCTCGGACAACAGCATCTGCCAGGatgTGAACGAGTGTGAGGTGTACCGGCTGGACCAGGGGGGCaagctgtgtgtgtatgagtgtgtcaaCGTCCCAGGCTCCTACCAATGCTCCTGTCCCAGAGGCTACAAGCTGCTGCCTGATGGAAGGAGCTGTGAGGATGTGGATGAGTGTCTGACCCAACAGCACAACTGCAGTAGAGGAACAACATGTATCAACACTGGAGGAGGGTTCCAGTGTGTGAGCCCGGAGTGTCCCCGATCACACGGCAACATCAGCTACGTCAAGACGTCTCCCTTTCAGTGTGAGAGGAACCCCTGCCCTATGGAGAGTCGTTCCTGTCACCTGGCTCCTAAGACGGTCTCCTTCcactacctctccctcccctccaaccTCCAGACCCCGGCTACCCTGTTCCGCATGGCGACTGCCGCCGCCCCTGGCCGCCCCGGCCCCGACAGCCTGCGATTCGGCATCGTCGGGGGCAACAGCCGCGGGATGTTCGTGATGCAAAGGTCGGACCGCCAGACGGGTGAACTGATCCTGGTTCAGGGGTTACGAGGACCGCAGGATATCAGCGTTGATGTGGATATGTCCGAGTATAGTGAGCGCACCTTCCAGGCTAAGCATGTGGCGAAGGTGCATGTTCTTGTGTCGGCGTATGACTTCTGAGgaggatggacagacagaggacagaggagcgagtgagagggacagaaggaaggaggagagaaaaataGAGCAATTGACAGAGGGATGAGGAagtgagaaggacagagggagaaggagaagttaAAAGAAAATGAGAGGGACAGACACATAATTGTTTGGACTGGCATTGACTATAAAGTATATTCGTGAGGATGTAGCTGAAATGAATGaatggttgagtgagtgagttaaTGAATGTGAGAGAGTAAACATTTGTGAAACAAACTGACAAAGTGGTAATGGAATGGTAATATTATTTTTCTTTCATTCGCTCAGGAGTTGGCCCCTGGGGTTGCCATAGTGACCGGAGGCGGCGCTCATGTATGTGCAATGCCATTGGCTAGATCTGTTTAAAGGCCCACTCCTTCATTTACTCCACTTAGTTTTCATTTAAAGCTGATGATCAAAAACGGCTGTAAATATCACAGAGTAGTCCTTTAAGAGACATGAACCCATATCTGCGTCtaaagtggcaccctattccgtattaAGTGCACAACTTatttgtgcactatgtagggaatggggtgccatttgggatgcacaccctGTATAACATGGCTCTGATTTATCTGAATATTTTGTTGCTGTTGTTTATTGTTACATACTCAGTGATTCAATGCCGTGTGCTTTTACAATTTGTATAATTTACAAACAGTGTTTTTTACTGACTTGCTTCGTGATTATAGGACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTTGTGATTATAGAACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTTGTGATTATAGAACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTTGTGATTATAGAACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTTGTGATTATAGAACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTCGTGATTATAGGACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTCGTGATTATAGGACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTCGTGATTATAGGATCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTCGTGATTATAGGACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTCGTGATTATAGAACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTCGTGATTATAGGACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTCGTGATTATAGGACCTAAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTTGCTTCGTGATTATAGGACCTTAACACTTAGAACAACTAAGAGTGTTTTTTACTGACTCGCTTCGTGATTATAGGACCTAAACACTTAGAACAACTAAGagtgttttttccccccattattattattattttttacaatagaAACCGTAATATTGTACTTGGACATATTTCCACTATGCTCATATTCAGTATGTAATTAAGATATGATGTAATTAATACATGGTAACTACAGTGATTTGGCAGCCCTGCCAATGCAGTGTACAATATATCAGCCATCTAATGTTTTAATAAGTCATTATTATTGCACATAACTATTTCTCCATACATGAAATAAAGACAGTCCTACAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1925415 lncRNA downstream 4950 29533652 ~ 29536389 (-) False G1683225
TU1925416 lncRNA downstream 4950 29533652 ~ 29536389 (-) True G1683225
TU1925364 lncRNA downstream 33078 29506532 ~ 29508261 (-) True G1683188
TU1925335 lncRNA downstream 63090 29477340 ~ 29478249 (-) True G1683175
TU1925318 lncRNA downstream 76608 29464197 ~ 29464731 (-) True G1683165
TU1925446 lncRNA upstream 27709 29598742 ~ 29599028 (-) True G1683251
TU1925447 lncRNA upstream 28110 29599143 ~ 29599406 (-) True G1683252
TU1925468 lncRNA upstream 137131 29708164 ~ 29708616 (-) True G1683269
TU1925610 lncRNA upstream 387017 29958050 ~ 29961061 (-) True G1683407
TU1925698 lncRNA upstream 531307 30102340 ~ 30103392 (-) True G1683486
XM_021576380.2 mRNA downstream 136754 29395784 ~ 29404585 (-) False LOC110499311
XM_036956133.1 mRNA downstream 136754 29395784 ~ 29404585 (-) True LOC110499311
XM_021576382.2 mRNA downstream 136758 29395784 ~ 29404581 (-) False LOC110499311
XM_036956135.1 mRNA downstream 136758 29395784 ~ 29404581 (-) False LOC110499311
XM_036956136.1 mRNA downstream 137845 29395784 ~ 29403494 (-) False LOC110499311
XM_036956145.1 mRNA upstream 16530 29587563 ~ 29600822 (-) True LOC110499317
XM_036956146.1 mRNA upstream 35673 29606706 ~ 29746328 (-) True itga9
XM_021576396.2 mRNA upstream 176192 29747225 ~ 29801835 (-) False golga4
XM_021576397.2 mRNA upstream 176192 29747225 ~ 29801836 (-) False golga4
XM_021576398.2 mRNA upstream 176192 29747225 ~ 29801836 (-) False golga4
TU1923643 other downstream 1005530 28535295 ~ 28535809 (-) True G1681658
TU1923599 other downstream 1067314 28473285 ~ 28474025 (-) True G1681623
TU1923194 other downstream 1676511 27860855 ~ 27864828 (-) True fa36a
TU1923198 other downstream 1676545 27860741 ~ 27864794 (-) False fa36a
TU1927010 other upstream 1540522 31111555 ~ 31113686 (-) True G1684661
TU1927277 other upstream 1836561 31407594 ~ 31412844 (-) True G1684920
TU1928979 other upstream 3240674 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 3506777 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 3962640 33533673 ~ 33534276 (-) True LOC110499358

Expression Profile