RNA id: XM_021576390.2


Basic Information

Item Value
RNA id XM_021576390.2
length 5987
RNA type mRNA
GC content 0.49
exon number 15
gene id LOC110499316
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29572397 ~ 29588171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gATGTTCTTCGGTTTCCGAGAAGCCATTTTGAGAACATGTTTCGGGCGCAATGTCCTATGACGATGAAGATGCTGAAACCAACGAAAATTGTTACAaatctgtgtgtttctccctccgtCTCCAATATCTCGATACCATGGCAGCAGTCTACCGGCGGGATGATAATAACAAAGCGGGGTATCAAGCTGTGCTTGCTGGGTTAATACGTCATTgaaatgagagaggagaaagaatgtCTGTTGCCTGTCTCTGTTTGAGACTTGTAACGGTTACCGTGAGTTTTTTCCAGTCTCCATGAAATCTACCAGCATTTCTCACGACACAACCCAACACCAACGGCCTCAGACTGAATAGCCTACAACAACTCAGTCTTGTTTCGAAAGGAGAAAGGCATTTCCAACCGTTGTTGTTTCCACCTACCGTCCATGGCTTCTGTGAGCCTGGTCTCCAGTCCCCCAACCCCCGTTGTTGTTCTTGACAAAAACATGACAGACTCTGAGCTTGCAGAGGAGGAAAGAGAGGATGGTGAATTGGAAGATGGAGAAATAGATGATGAAGGGATTGGGATTGAAGAGGAGAGCAAAGAAGAAGTCAAAGAAGTGAATGAAGAAAAGGAAGAGAAAGTAAAAGAAAACGAGAAAGAAAAGGAAAAAGACATAGAGAAAGAAGACAAGACACACAGGCACTCCAGAAAAAGATACAAAAAaacaagagagaagagaaggtcAAAGAGAAGGAGACGCGACAGTCGGAAACATCACTCCCCCTCCAGTAGCTCCAGTTCTGACAGCTATGAGTCTTCCctggagagaccagagagagacaggcccAAGAACAAGAAGAACCAAGACAGGTCACACCGTGGTGGTGACTATGATGGCCAGTCAGCTCAGCATGGATGTGATCCATCAAGTGGTGGCCATGGTAACCCACAGAGGTCAGAGAGGTCAGCAGGCCGACACAGGAGTGGTAGTGGTGACTATGACAAGTACAGCGACTACAGCGAAGACAAGTATGACtatgagggagaggggggtgattATGATGAGGAGGAGATGTGGCAGGGGAAAGACTCTATATCTCCTAGCCAAGGCCTGGGCAGGGGACGTGGTTCCAAGGACCAGATGAAGAGAGGTGGCATGAAGGGCATGCagaaacaacaacagcagcagtTTGGTGGTCAGCGGGGGCGTGGCAGAGGAGGTGGAGTGGGAGGAAGGGGGCGGGGCAACATGCTCAACAAGAACAACAAGAAGCAGATGCAGCAGATGAAGGGCAACAAGAACTGGGGGCGTGGCCGGGGGCGAGGTGGGGGGGCCGAGCAGGCCGGAGAGGGGATGAAGCAGGAGGGTGGTGGGAAGGGCCCTCCGGGTGGTTTTCAGAAGAAGCGTCCCATTATGACCAAGGAGTTCATAAACCAACACACGGTGGAACACAACGGGAGATACATCTGTAAATACTTCCTGGAGGGACGATGTATCAAGGGGGACCAGTGTAAGTTTGAACATGAGCTGGTTACTCCAGACAAGAAGAAGGAGCTGTGTAAATTCTACCTCCAAGGATACTGCAGTAAAGGAGACAACTGCATCTACATGCACAGTGAATATCCCTGTAAGTTTTTTCATACTGGAGCCAAGTGTTATCAGGGAGACAACTGTAAATTCTCGCATGATCCTTTGAATGATGTGACCAAAGACCTGCTTGATAAGATAATCAACACAGAGGAGGAGATCGCCCATGAAGATGAGATGGAGTTGGAGGACCTGAGGAAACAGGGGATTGCCCCCCTGCCTAAACCCCCTCCTGGGGTGGGGCTGCTGCCCACACCGGGTCCCGGTGGTCCTGGGTCTGGAGGTcctaaccctggtcctggacCCTCCAGCCCACAGGAGGGGGGAAGCAGTGGGGGGAACTCTGGGGGAAAGAAGATCCCCTCTCTGTTTGAGATTGTGGTGAAACCTACAGTGGACCTGGCTCAGAAGATTGCTCAAAGTGGATCCAACTTCAACTGTCAGTCTGGAGGCCAGTTTCAGGGTGATGAGTTTGGTGGAGGGGGTCCCGATGACAACATACAGCAGAGTGGACCCAATGGCccaccccctgtcctccctccggGGTCTCCCCCTGGCTCCATGGGgggtccctctcctccctatccatCCCACACTGGGCCACCAATGCAGCAACAGCAGAACCCCCCTGGACAGCACCCCCAACACCAACCACCCCATGGGTTCCCCATGCCACCACCTCCAGGTCCGCCACCACCCTTCCTGGGTCACCGACCAAATATGAACTTGAACCCCAATATGAACATGAACCTCCAGAGGCCCCCTCCACCGTTCCCTCCATTCCCAGACCCCATGCAGATGCTTCAGAACATGAACGTGCCGTTCCAAACCATGGGAGCCGTGGGCCAAAACCCTGCAGAGTTCTTTAACAACTTCTTCAGGAACCAGGCTCAGGCCATGGGCCAAGGAGACATGGGTATGCCTTTCAGTCAGAACACCTCCCAACAGCAGGGGAGCGCTGACTCCCAAATGCTGTCCCAGATGCAGGGCCTACCCCCTGCAGTACAGAAGGCCCTGCTCCTACACCTACAGCAGCAGCAAGGCAGTGAGCCACAAGGTTTTGAGGAACAAGGTGGCAAAACCCCTAAAGATGACTCTACTAACTGGTACTCCAGTGATGACGAGGATGGGAACTGTGTCACGGCCATTCTTAAGTCTCTGAAGAAACAGAATGAGAAGCTCCAGCAGGGGCCACAGTCCATCAAACacccctctgttccacagttGGCCCCTGGAGACCCCAGGCTCCAGAAGGAGCGGGCCCCACCCAGCGACCCCCGTATGAAGGCAGCAGACCCCCGCCAGAGACCACCAGACATGAGGAAAGAGCCCGACTCCAGCGGGGGCCCCAGACAGGCCAGGGACCCCAGGAAGGTGAGGCCCCTGGAGCCACCCAACTCCTTCAAACCAGAGCTCCACCACCATCGCCAGCAGCAGCATCACCACAATAAGGCTCCAgccagagaggaggatgaggatggagagagggagctaAGAGAGCGGGCTGCTCTCATCCCTTTGGATTCCTGCCCAGGGGTGATGCTCCGCGACCCACGCTGCCAGCTGCAGCAGTTCAGCCACATCCGTGTAGACGTTGTGTTACAGCGCCCAGCCTATGCCTCAACCGTGGTCTGGTCGGCTGAGGATCTCATCCCCTCACTGGTGCCCAAACAGGAGCACTCCATCAATCTACCTCTACCGCCCCTCATCGCTGACGCACAGATGAACCGAACCAACAATAGGACCAGGACTTTATCCCCTGACCACTCCACCATaaccacctccaccacccctccacacatGGACCCTCGCCTGGTCGCTGCCCGTCTGAAGGAGGGTGTGCTGGGTGTGGGGGTTGGACTAGGCAGGCTCCCCTCCAGGACACTGGAGCCCAGGGGGTCAACAGAGAGGTTGTTGGATCCCAGGCAACACAAGGCCCTGGGTGTGGACCCCCGGATAGGTCGGTCAGGTAGTGTGGACACTAAGCTTCCTATCctgagggagacggagagaggtggtgggggaggtggaggagaccCCAGGTTGCAGAGGAGCAGTGCTAGTGGAACCTCTTCCTCCAAAACCACTACGTTAACATTTTCAGCCCCGGCGCCAGCTCCATCTAAATCTGAGGCTGAGAAGCCAGAGAAGCTGTGTCCGTACGCCCCAGGGCGCCTGTCCTCGTCCGGTGGTGGGTTAGAGAGCCCCACCACCTCCACCCTGCTAGGGGGCATCAGCCTTTATGACCCCAGAAACCAGGCACCACAGCAGGGCCAGCGGGACGAGACAGAGCCCCCGAGGAAGACTGGGATCCTCAAACTACCAGCCAAGAGAGAAAACAACACTAACACTAAAACTCCAGCATCATCCTCGCTCTCGCCAACCCAGCGATCTGGAGGGTCTGTATCCACACAGGATGTCAAGGGCGGTACAGAGAGCGCCATGGATGGGTCTGGGTCCAAAAGTCGTCCACCTCTtaccctctcctctgctcctacAGTGACAATGTCAGGGTCGGAGCCTCCCAGCTCCCCAGTCAAATCCTCCGCCCCCGCGGTCCACCACCTACCCATCCAGGCCCTCGCAGGCCTGATCAGGCCCCCCTACACAGACCCCAGACAGGTCAAACAGGTAGAGAAGGAGGCCAAGCAGCAGGAGGagaaggagctggaggaggagaagggagaagaggaggagaaggtggaggaagcaaaagagaaggaggagacagAAGACGATAGGCCGCTGAAAGACGTATTCAAGACCTTCGACCCCACTGCCTCCCCTTTCAGTCAGTAAATGCTCCTATTTTGAAATATATGAAAACACTCCTGTGTTGCAATGTTTCTAAATATATTGACAACCTagtaaaatatactgtatgttctgtaCATTTATTAGAAACTTGTATCATTATTATTGAGCTTTACATATTTATTTCACCTGTATATAAAACTGTCTGTTCTTCAGGATCTGTTGAGAATAGACTCACGTGTCACTAAATGTATTGTACATTGATAGAGATAGTCCCTGTCTGTTGCTTCAAGACAGACATTTGATCATGTTATTATACAGTATATGGCTACCAGTCATGGCAGCATAGACGTAGGGTAGATGCTGGCTGTGCAAAGACTTGGTTTATGTACAGTATAACTATCTTAAGTCTATAGGGATGTTATTGGTCTTTGAAAGGGAGTTAAGATATGGACAGTATTAAGGGTTTAACTTTCATATCAAAATATGTAATATTAAGGAACTGTAttaaaatggttgttttatgaAACAGTACAGTATTTTCGGCCAGGTCTACAccttttgagaaaaaaaaaaacgtttaaaaaacaaacaatacagtCCTATATACCAGAACACTAAGTAAACCTTGAATCTCAGTTATTTTTCCTTTTGATCTTATACTTTAATATTATTTACAGACACTTTTACATTTGTGTTCTATGCTCACTATGGTGGTTAAGAAATGAGAATATTGAAAGTGGGTGTAACATGGGTTTCATTTGGTCCATTTTGTGTGATTATGTATGGTGCTACATTTGAGATTGACTGAATTGAATTGATTTTTATTATATGCTATTAGGTCACATTTTAAATGGCTTGTTTCGTATCATAAACACAGTGTTTTTTTATGAATGGTGTAATCTGGGTTAtgtcatgtttgttttgttttataatgTCAATATGGTTGATCAGATATTGTCTAAATGGTCAAACTCAAAGATGCTCATCATGTTGAAATGCCTTTTTAAGCAGTGTCTTTCAAAAAAAGAAATCCATACATGACATCCTCCTTTATGTTGTGAGATGTATTTATGTATAGCCAAAGGACATGTACATGACTTATATTCATTCCTCTTTTATTCCCCCAATACATAACATCCATATGCaaacaacaatatacagtcacaaacatccacaacatcacccCTGCCTAGACCctctcacacccccatctccagcaaTACTCTCCGCCaggccacatggcctcaaacggcatcattttgtttctctccatcacccacgcactttcaacatttagataataaagGATTGTacttttccattgtgttaacgatggaggattggttgatttccagtttgTAACTATACGTCTTTTCAAGATAATTGACAAGAAAAATATGGTCCAACCCATCgggtatctcactgcaccctcgtatgccatgtcttgaaatatgcagacagattaaaagtacatttacattctaatacttctgacagccaactttctaactcTGCCAATAACTTTGGGActttatagcattcccagaaggcatggattattgagtcattgttcgttttacacttaagacgtgactctgccattgtgctgtagaatttgtgaattttgtctcgTGTAATAAATTAAAAACATTAGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1924572 lncRNA upstream 28933 29541352 ~ 29543464 (+) True G1682489
TU1924497 lncRNA upstream 176103 29395815 ~ 29396294 (+) True G1682418
TU1924520 lncRNA upstream 189796 29382396 ~ 29382601 (+) True G1682440
TU1924507 lncRNA upstream 209188 29362836 ~ 29363209 (+) True G1682427
TU1924505 lncRNA upstream 211381 29360733 ~ 29361016 (+) True G1682426
TU1924633 lncRNA downstream 1679 29589850 ~ 29590169 (+) True G1682544
TU1924634 lncRNA downstream 2162 29590333 ~ 29590539 (+) True G1682545
TU1924635 lncRNA downstream 3021 29591192 ~ 29591591 (+) True G1682546
TU1924658 lncRNA downstream 12224 29600395 ~ 29600596 (+) True G1682553
TU1924659 lncRNA downstream 12533 29600704 ~ 29600951 (+) True G1682554
XM_036956140.1 mRNA upstream 35978 29510861 ~ 29536419 (+) False tmem87b
XM_036956139.1 mRNA upstream 35978 29510972 ~ 29536419 (+) False tmem87b
XM_036956138.1 mRNA upstream 35978 29510973 ~ 29536419 (+) True tmem87b
XM_036956137.1 mRNA upstream 64101 29470031 ~ 29508296 (+) True mertka
NM_001124326.1 mRNA upstream 113898 29437357 ~ 29458499 (+) False lhcgr
XM_021576400.2 mRNA downstream 437454 30025625 ~ 30060187 (+) True msh6
XM_021576403.2 mRNA downstream 606098 30194269 ~ 30217647 (+) True LOC110499323
XM_036956153.1 mRNA downstream 631615 30219786 ~ 30241466 (+) True LOC110499324
XM_036955550.1 mRNA downstream 1852106 31440277 ~ 31440996 (+) True LOC118942000
XR_005037978.1 mRNA downstream 1906923 31495094 ~ 31511177 (+) True LOC110499596
TU1924556 other upstream 114476 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 793988 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 845902 28717361 ~ 28726495 (+) True G1681180
TU1922082 other upstream 2196578 27375354 ~ 27375819 (+) True G1680230
TU1921636 other upstream 2484934 27084426 ~ 27087463 (+) True G1679823
TU1928807 other downstream 3066183 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 3589122 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 4737666 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 5793538 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 5793538 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile