RNA id: XM_021576396.2


Basic Information

Item Value
RNA id XM_021576396.2
length 8816
RNA type mRNA
GC content 0.48
exon number 24
gene id golga4
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 29747225 ~ 29801837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGAGCATCTCGCCATTTTATCGACAATCTCTGCTAATGCTAAAGCTTGAACAAGGACGTGCCGAACACCCCGAAAACAAACACAGTAAAACTGAAGTCAGAGATTACCAAATTCCCAGTTGTTTAAAGCCGCATTAGTTTTAGCCAACCTGTGTGTACTCTGGTTTAACCATGTGATTAATAGATTCCACGATTCGGATTTGAGCGAGTTCCTGACACTTAACGCGTTCAAACAACTCGGGAATCTTAGACTTCCAACTTTAGTGCGTTCAAgataactgggaactcgggaGTGAAACGAGCTCCGCCTGGGAAAAATCGTtctgaacggtcatccaactcggaatttcaGGTCGGAAACTCGGGCATACTGAAGATCACGgaagtcatgatttgacctcgttttaAATCGAGTTCCTAGTTGTCATTAAAGCACCAACTGTGTCACCCCTTTGCCTGCTGAAATCTAGTACCTACTAGCGTTTGAACGCTGAAGCACTGGCATTGTTTGTCCCACTCTGCTCGTCGTAGCTTAACTCTGTCGCTCATTTTGCTCCACGTCGACTGCACATGCGCACTACACTGGTCACCTGCAAGAAGAGACGAGTGACCAGGAATAATACTAAATACAGGAATTACattacaataaaatacatttcgCGTGGAAGTAACAACATCTGGATGAAAAGATGTTCAAGAAACTAAAGCAGCAAAAGATAAATGAGGAGCAATTGCCGCAACGGAATGCGCAGTCACCGCAACAGGCCCAGATGGGCCCTGGAGAGAGACGTAGCagccacacacacccctccctgcACCAAGATACCTCAGCCTCACCTAGTGATAGAGAGGTGCTGGCCGGGATGATAGCCGAACCTGCTTTTCTCTCTGAGTATACTATCTTTGCTCTGGACCAATCAAAGCCACCCCCCAAAGCACCTCAGGCTCAGGTTGCTCAGGTAGCCAGTGCGAGTGGCAGGAGAAGTGCCACAGGATCACCTAGAGGAAGCATCAATGGAGATGGGAGGGCTTCTCCTCAGAGAGAAGAGCCCCAGTCGTTTGCCCAGAAGCTACAGCTCCGCGTCCCCTCTGTGGAGTCTCTCCTCCTCCGCGGTGCCAGCCGGGCCGAGGGCCTCTTCCGTTCCCCGTCTAAAGAGAGCCTGAACCGCAGCCCCTCTCTCAACTCCCTCACCCCCCTGGGGGAGAATGAGCCCCTGGCCTCCCCCTCTGCCACCCCAGCCTACGACCCTCCATCAGACATCGAGAGCGAGGCAGAGGAGACGTATGGTAGCCCTGAATCCCTGCCGGCCCTGTCTAAAGAACAGCTGATCCATCGGCTACACAGGGTGGAGAAGAGCCTGGGGAACTACAGAGGGAAATACTCAGAGttgGTCACTacctacagaacagtccagagagataaggagaagaCCCAGGCCATTCTCAGTCAGAGTCAAGACAAAGCTCTCCGTAGGATAGGGGAGTTGAGAGAGGAGTTGCACATGGACCAGCAGGCTAAGAAGCACCTTCAGGAGGAGTTTGATGCTGCCCTGGAGGAGAAGGACCAGATGATTACTGTGCTTCAGACCCAGGTTGCCCTGATGAAGAAACATCTGAAGGGGGTTCCTGGTGGAGCTGTGGCCCCTGAGGTTGAACATCCTCTCCAGGCTGAAGATGCTCCAGACTCCGCCTCTGCCCCACAGAGCCCCTTCAAAGACGCAGCAGAGGGCGGCACTGACCCATCTAAAAGCATGGAGGTGCTGCAGAAGAGGGTGACGCGCCAGGAGAATCTGCTCCAGAAGTGTAAGGAGATGCTCAGGACACACAAGGAGCGCAGTGCCCAGCTGACCAGTGAGAATGACACTCTACAGGAGCAGCTGCAGGAGAGACTGCAAGAGTTGGAGAAAACCAAGGACCTGCACACCACAGAGAAGACCAAGCTCATCACCCAGCTGCGTGATGCTAAGAACCTTATTGAACAGCTGGAGCAGGACAAGGGCATGGTCATAGCAGAGACAAAGCGTCAGATGCATGAGACTCTggagatgaaggaggaggagatcGCCCAGCTCCGCTCCAGAAGCAAGATGGCCGCCGCCCAGAGAGAGGAACTGCAGGAGCAGAAAGAGAAGTCTGAGAAAGCAGGGTTTGAGGAGCTAGAGAAGGCTCTGGCCATGGCCCAGAGGGCTGAGGAGGCACGGAGGCTGCTGCAACTCCAGCTGGAGGAACAGGTGAAGGAGGTAGTACAGGccggggaagaggagaggaggagtctgCAGCAGGAGCTCACCAGGGTCAAGCAGGAGGTGGTAACCATCATGAAGAAATCCTCAGAGGAGAAGATGGCAGAGATGGAGAAGCTACATAGTGAAGCACTGGCCAGTAAAGAACAGGAGCTCAGCGCTCGAGTCAACCAGGCCGTGGAGCGGTGTCAAGAGGAGCTGGCCCAGGCTGCCAAGGAGTTGGAGCAGCAGTCTGCCCTTGCCCTGGAAGATGCAGAGCTGCAGAAGGCTGCCATAGAGACCGAGGCAGAGACCAATGCTAAGGAAATACTTCTGGAGCTGGAGACCACCAGAACTAGAATTCTGGAACTGGAGAGCTCTCTGGAAAGGTACTCCCAACCTGGGTCAGTTCCGTCATCAGATGATCTCTCCACTCAGATGGAGGAGCTGAGGAGAAAACACGAGGAGGAGGTGACTGCACTAGAGGAGAAGCACCGTGAGGAGCTGGAGAAGCACAAGGTAGAGCTGCACCAGGAGGCCTTAGCCCAACACAACGCTGCCATGGAGGAGTTCAGGGCAAAACACAGAACTGAAGTGGAGACCATCTTGAAGGAGAAAGAGGCCCAGTTGCAGTCCCATGTAGAGGACATGAACCAGAAGACAATGGAGAAGCTGGATGTAAAACAAACTGAGTTGGAAGCCCTTTCCTCTGAGCTCCAGGAGGTGTTGAGGAGCAAGCAGGTTCTCGAGGAGAGACTGGATGCAGTTGAAACTGCTGGTGGGTCATCCAGGCAGGAGCTGGAGCAGAGACTACAGGAGGTGCTGACCAAGCACAGTGTAGATATTGAGGAGATCAAACTGCAGCATGTGCAGTCCCTGGGAGGAATGGAAAAGACGCTAAAAGAAGAACTCAacaagttgatgctgttgctgaaggagaaagagaaggagctTGAGGCTCACCTTGTCTGTGAGAAAAGACTGAATGAAGAATCAGAGAGGGTTCTTCAAGACCGGAATGCCAAGGTTAAAGAATTGGAGGAGCTTAGGAAGAGTTTAAAGCAGGCCCAATCCGAAAAGAAGGGCCTTGAGAAATCTAACGCCCAACTCCGTAAGATCAGAGATGAACTCTCACAGTGCAAGAGTCGGTTGATAGATTTAGAGCAAAAACTGGTGACAACTCGAAGTGAATGCCAACAGAAAGAGGAATCTCTTCAACAAAAGGTACAGGAGCTTGAAGAGCTAGAGAAGCAGTTGCAACAGGCTAGGAAGCAGCTCTCTGAACAGGATACATCTTACACTGATGAACTGAACACTAAGCAAGAGGAAGAAAAGCAACTAAAGAAACAGCTAGAGGACCAGAAGGCTGCTCATGAGAAGGTAGAAAACATTAAGACCGACATGGAGGCCAAGTTGAAATCACAGGAAGCGAAGATGGAGAAATTTAAAACAAAGAACAAAGAGATGCAGGAGAAATTCAAGAAGAAGCTTCAGGAACTTGAGGAATCTTCAAAAAAGGAGCTGGCAAAGAAGGAGTCAGAGCTATTGCAGAAGGAACAGCAAGGTAAAGAGAAAGTCCTGGAGTCTCAGACAAGTTCAGAAGGCCTGAGCAGTGCTATGTCCCAGCTTGAGGCCAACCACAAGGAAGAACTAGAGAAGATGTGTGAAGTCCATAAGCAAGAGAAGGAAAATCTTGAGCATCATTGGCAGGGAAAGCTGGAACAACAGGAAGAGGAAATacaggagaaacacacacaaatactacaGGAGAAGGTACAGGAATTGGAGGAGGTCACCCAGCAGCTTGGAAAgaccaaagaagaaaaagagcAAGTTGTGCAGGAAGTGAAGAACATGAAGGAGGAGTTGGTGATGAGACAGACCACTGTGCAGAAACTGCAAGCCGAGCTTAAGGAAGCGGCAGTCAAGATGGAGAGTTTATCTCAATCTGAGGCAATGTTCAAAGAGCAAGTAGAGGTGATTGAGAGGAATCTAAACACGGCTCTGAATGAGAGGAACTCCTTCCAGGATCAGGTGAGCAAGACTGAGGAGAAGGCAAGAGAGACGATCAAGGCTCTGTCTGAGAGGTTTGTAGACACCGAGACGCAGCTTCAAGCTCTTGAGGCTTCTAAGGGTGAAGAAGGGGAGGCCGTTCAGAGGAGGCTTGAACAGCATTCTCTTCAATTGGAAGTCAAGGAAAAAGAACTGCAGAAGCAGTTCACTGGGATTAGCAACGAACTGATGCGTTACTGCAGGGAAATTGAGGCCAGCATCGAAGGTGGTACGAAGGAACTCTCTGAGCGAGTcgagagcagagtgagagagtTGAAAGAGAGGGTTCTGGGTAATCAGAAGAAGGTAGCACATCTTAAAAACGTTATCCTTACCAAGGTTGACAGGATACGCTCTTTGGAGGAGCAACTCCatcagaggacagaggagaataaGAACCTATGCAGTTCACTAGAGCAAATGACTGTTCAGCTAAATGTACACAAAGATGATATCAAAGCCTTAACTGCTGAGAGGGAGTCTCTGCAGAGGGATGCTGAGAATCACGCTCAAGCTCTCTCAGAAAAAGTAATTTGCATCGAACAGCTCAGTGAGGAAAACCGAACCATCTCAGAGAATGTCAAATCAAACGTTGTGCATATCAGCAACTTGGAGAGTATCATAAATGACTTGAAGACCCAGTTATCAGGTAGCCATATGAGGAAGGATGAAGCCATATCACTGCTTGATCAGCAGCacaaggaggagagacagaggcttGTTTGCCAAATGGAGGAGATCAATGACAGactagagaaagagaagaaatcTGCAGTGGAGCAAGCCGACACCCTCAGGAACAACCTCACTGAGTTCAAGACGAAAGCAGAGTCCAAGTTCTCTCAGAACCACAATACTGTTAAGTCTCTACAGACCAGACTTGAGGATATGGAGAAACAGATCTCTGAGAAGAACGAGGCCTTACAGAGGCTAACGGCCAGCATTGACAATCAGTCCGTCAGCAAGTCGGAGATGGACCAAGCCTTGAGTGAAAAGGAGCAGAAAGTCAGTGCCCTTTCTTTGGAAGTGGAGAGCTGCAACAGCCGGCTCAGTGAGCTGGAGGAGCAGTTGGTCCTCAGGACGAAAGAGAGTGAGCAGCTAACTGCTGACCTGAAGCAGCAGCAGATtatcagagagagtgagaagcgAGAGCTCACAGAGCATCTACAACAGACCCAGGAGCAGTTCAGAACCCAGAATGTAAATCTAGTCCAGGCTACAGATGAGAAACTGCAgtccctggagagagagaaccaaactTTGAAACAAGAGCTGGAGTGGCAAAGGGAAGCCGTTGAGAAGACGAAGGCTGAGATTCTCAAGAGCAAAGAGGAGAGTCTGAAGGTGGCTGAAGAGAGGTTGTCAAAAGACAATGCTGGGAAAGTGACCGAGCTGAAGAAGAAAGCTGAGCAGAAAATCAGCCAGATTCGGAAACAGTTGACCTCACAACTTGAGGAGAAGGAAAAGACAATGAACGACCTTCAAACACAGTTGGAAGAGGCCAAGATCGATGAAGCGAGAAAGAAGCAGCAGGTGGAAACCCTGGAGGAGAAAGAAAATTACCTTGAGGAAGCTATGGCCAAGATGACGGAAGAGCAGGAGAAACGCATTGAGCAAGTGCGTAGTGATGAAAGACTGGAAAAAGAGAGCTCTTTACAGAGTTTGAAGGACATTTACGAGGAAAAGCTATCATTACTTCAGAAAGACATTTCAAACCAGGAGGAAGCCCTAGCCAAGCTGAAGGAAGAACAAGAAAAACATATTGAGCAAGTACAGAACGTCGAGAGACTTGAGAAAGAGAGCTTATTGGAGAGTTTGAAGAACATGTACGAGGAAAAGCTATTGTCACTTCAGGGAGATATTTTGAACCAGGAAGAGACCAAAGCAAATGAGACCCTCTCAAGGCTTGAGGAGATGAAGATTAAGCTTAAGGAAGTGGAGGTGGAAAAAGTAAACTTTCTGGCTGAAATAAGCTGCCTGAAGGATGATCTGCTTGAGAAGACTGCACTGATCGAACAGCAAAAGACAGAATTGGCTAGCTTAGAAAAACAGGGTATGAATGCAGTGGAGGTCGTGGAGCATTGCACTGCAGAGCAAACCAAGAGTCTCACAGCAGGCAAAGAGACGGAGAACCACTCTCTGACGCAGGAATATGGGGATGCTGAATCTCTGTCGTCCCTGCAGAATAAGCTGGCAGAGGCAGCGCAGGAGAAGCAGAATCTACAGAAAGACTTGCGTTCCCTGAGGAGGGAGCACAAGCAGGATCTGGAGTATGTGAAGAAAGAGTTGGCCCAAGAGAACGAGAAGAAGCTCAAGCTTGAGCTCGAGGATCTGGAGATGAAGCAGAACTCGTCCCTGAAGCAGCTGATGAGGGAGTTCAACACACAGATGGCTTTGAAAGAACAGGAGATGACTGCTGCACTGAAGGAGACCATTGGGAAGGCCCAGAGCGTGGAGGTGGAGCTTATGGACAGCCATCGGGAAGAGACCAATCAGCTGCAGAAGGTGATCGCCCAGAAAGATGATGACTTAAACAGAACAGTCCATCGATATGAGCAGGTCCTGCAGAGTCGAGAGGTGGAGATGGGGGACAGAGTGTGGCAGGTACAGAAAGAGCTGGAGGACCTGCAGGCAAGGACCCACAGCGGCAGTGGAGAGATGAGTGTGGAGGAGCTGCAGGCCCAGCTAGCTGAGAAGACCACCCTGCTCAGTGAGGCCAGGCTGAAGGAGCAACAGTTTGTCGACAGGATCCACTCACTAGAGGACAAAATGAGATGTGTCCACAAGAACTCAGTGTTGACTCATATGGGGAGCACGTTCAAAGATCCTGGCCATTACCGTGCTGAGTCCTTCTCGGAACCCACAGAGTTTGAGTACCTGAGGAAGGTGCTGTTTGAGTACATGATGGGGCGGGAAACTAAGACGATGGCTAAAGTCATAACCTCCATGCTCAAGTTCCCACAAGACCAAGCTCAGCAGGTTCTGGAGAAAGAGGATACAAAAGCAATTCCTTGGCTACGATGAGGGTCAGGTATTAGAATGATGCTGGTACTTTAAGGATGGAGGGTGGACTAAACTGCTGCTGAAGGACTAGAATGAAGACTACTGTACCTCTGTGGACCAGCTCTAGCCCTTCTACTGTCCTGTCTGACTTCTTTTgcttctgactgtgtgtgtttgtgcgctgTGTAGATATGTGTATGAGCTGCATAGCTAATCTTATGAGGGAACTATAAAATATGCCAACTAAAGATAGTATCTAATTCTTCCAGTCTACTTTCACGCGATGAAATTAGGGTTTTTAATTTATGAATTATacaatatttgtttgtttttttagtcCAAAATGAATTATCTTTCTTACTTAGATTTTCTTTGGATGGATGGCTTGTGCAATAAGTTTGTTTTGGTCATTGGGTTGGTTGATTGTTTTTGAGTTGATTCTTTGGTTGTGTTTTCTGATAAAtgaactgtccagtgtttccagatttctattaaatatgacctataattaatcacaatatgagtgaaatactTTCCCTTTGAGAACGTAGTATTtaagcagcttttctgtgttggaatggtgtgggtgtaccccaacaactaACCTTATGTAGCAGGTCTTAAAGAAATGCCAGAAACTAGATTCCCTACACACTAGTCTTGACGAGAAGGAAAAAAAACTGTcaggggaggttctcttctgcactgttcagcCAATCCattaaatgtggaggaggagttaagatggagttgCAACACAggctctttccatttcccctgaaaaccagAACATCCGGTTGGTTGTTGGGGActacccaacaacagaatagtgtgggcgtataccggtcattaaaaatatgaacgtgagtagaccgctgattggccagctcagccAATGAGGCAGGATGACATCGTTCTCTATGAGGAAATGGCAAGCATTTTCTAAACTGTCTGTTTGACATACAAGTTTGAGGTGGGGTTTTCGAAGTGTTATTTCTTCAATTTATGCTTTGCCCACAAATATGAGTATAAGActagtcaacaacattatttgggtatgagttaacagaatatgaacttttaGGAGGTTTtaactggacagttactttaaattaTGTTTTTGAGTTGATCCATGGTTGTTTTTGAGTTGATCTTTGGTTGTTTATCAGTTGATTGTTGGTTGTTTCTGCTCTACGTATCAATTCCCCCTTATGACTGTGTGATGGATCATAGAAATAAAATATCTACGTTCTATTTCTATCGGTTCTTAATATGAATCtgcattctatttctatggatgAGATGACCCTTTAACTGTACCTTCCATTACACTATACCACTTAGACACACTGGCTTCTAggaccatgtttgtttgtttcccaCAGCTTTTCTACTTTATATTTTGTGGAGACTGACCAAAAAATAAACTCAAAACATATTGTAAAGAAAAAAGTGAATCTGTACTATTGGGAACAATGTGACTGTTggctatattaatacattttgagACAAGCTAATACAATTTTATTTACACTGAt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1925468 lncRNA downstream 38609 29708164 ~ 29708616 (-) True G1683269
TU1925447 lncRNA downstream 147819 29599143 ~ 29599406 (-) True G1683252
TU1925446 lncRNA downstream 148197 29598742 ~ 29599028 (-) True G1683251
TU1925415 lncRNA downstream 210836 29533652 ~ 29536389 (-) False G1683225
TU1925416 lncRNA downstream 210836 29533652 ~ 29536389 (-) True G1683225
TU1925610 lncRNA upstream 156215 29958050 ~ 29961061 (-) True G1683407
TU1925698 lncRNA upstream 300505 30102340 ~ 30103392 (-) True G1683486
TU1925745 lncRNA upstream 412658 30214493 ~ 30217636 (-) True G1683532
TU1925753 lncRNA upstream 419537 30221372 ~ 30233412 (-) True G1683540
TU1925913 lncRNA upstream 644053 30445888 ~ 30446190 (-) True G1683690
XM_036956146.1 mRNA downstream 897 29606706 ~ 29746328 (-) True itga9
XM_036956145.1 mRNA downstream 146403 29587563 ~ 29600822 (-) True LOC110499317
XM_036956144.1 mRNA downstream 176192 29541339 ~ 29571033 (-) False LOC110499315
XM_036956141.1 mRNA downstream 176194 29541339 ~ 29571031 (-) False LOC110499315
XM_036956143.1 mRNA downstream 176199 29541339 ~ 29571026 (-) False LOC110499315
XM_036956148.1 mRNA upstream 258291 30060126 ~ 30093707 (-) False fbxo11a
XR_005037977.1 mRNA upstream 258291 30060126 ~ 30093714 (-) False fbxo11a
XM_036956149.1 mRNA upstream 259732 30061567 ~ 30093707 (-) True fbxo11a
XM_036956151.1 mRNA upstream 306847 30108682 ~ 30157830 (-) False foxn2a
XM_036956150.1 mRNA upstream 306847 30108682 ~ 30158648 (-) False foxn2a
TU1925354 other downstream 200908 29541315 ~ 29546317 (-) False LOC110499315
TU1927010 other upstream 1309720 31111555 ~ 31113686 (-) True G1684661
TU1927277 other upstream 1605759 31407594 ~ 31412844 (-) True G1684920
TU1928979 other upstream 3009872 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 3275975 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 3731838 33533673 ~ 33534276 (-) True LOC110499358

Expression Profile