RNA id: TCONS_00050083


Basic Information

Item Value
RNA id TCONS_00050083
length 654
lncRNA type retained_intron
GC content 0.39
exon number 2
gene id XLOC_025388
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 27027781 ~ 27056180 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTGTCTTTGTCTTTATCAGCATATCTTCAGGCAGTGCAGGCCACCATGATACTGGCCACCATCTTGTGCTGTGTGGgattctttgttttcattcttcagCTCTTCCGTCTAAAGCAGGGAGAGAGATTCGTCTTCACGGCCATAATTCAGCTTCTGTCTGCTTTCTGTGTGATGACCGGTGCTTCTATCTACACAGCAGAGGGCTTAACCTTCAATGGCCAGGAGTTTAAGAATGCAGAGTATGGCTACTCCTTCGTTGTGGCCTGGGTCGCGTTCCCAATGACGCTGCTGAGTGGCCTGATGTATCTAGTGCTGAGAAAACGCAAATAAAAGTGCAACATACCACCTCACCATCTGCAGCCTTAGCCAAGACACTCGAATTCtaataaaacttgtttttaaaagtaGATAAAAACAGAAAATTCACCACCGGTCTGAAGTCTGGgatcagttttttgttttttttgtttacatttttcaaagaATTTTGCTCACcatgactgcatttatttgatcaaaaatacagtaaaactgtaTAAATAgatgttaaatattaattctattttaaatgAGAGTTTTGTTAGTGAAagtagtttaaaatgtaaattatttccaTGATGAAAAGtggaattttcagcatcattacttcagtT

Function

GO:

id name namespace
GO:0003093 regulation of glomerular filtration biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0045121 membrane raft cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040822-24 Involved in regulation of glomerular filtration. Predicted to be located in cytoplasm and nucleus. Predicted to be active in plasma membrane. Is expressed in blood vessel; orbit; pectoral fin; pharyngeal arch; and pronephros. Human ortholog(s) of this gene implicated in nephrotic syndrome type 10. Orthologous to human EMP2 (epithelial membrane protein 2).

Ensembl:

ensembl_id ENSDART00000153969

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050078 lncRNA upstream 308965 26742409 ~ 26743225 (+) True XLOC_025385
TCONS_00052678 lncRNA upstream 415792 26635820 ~ 26636398 (+) True XLOC_025384
TCONS_00052677 lncRNA upstream 635406 26411233 ~ 26416784 (+) True XLOC_025383
TCONS_00052676 lncRNA upstream 690392 26355294 ~ 26361798 (+) True XLOC_025382
TCONS_00050076 lncRNA upstream 700727 26349655 ~ 26351463 (+) True XLOC_025381
TCONS_00052679 lncRNA downstream 239959 27294308 ~ 27340431 (+) False XLOC_025390
TCONS_00052682 lncRNA downstream 239959 27294308 ~ 27343644 (+) False XLOC_025390
TCONS_00052681 lncRNA downstream 239959 27294308 ~ 27343644 (+) False XLOC_025390
TCONS_00052680 lncRNA downstream 239959 27294308 ~ 27343644 (+) False XLOC_025390
TCONS_00052342 lncRNA downstream 239959 27294308 ~ 27343644 (+) False XLOC_025390
TCONS_00050081 mRNA upstream 145839 26905024 ~ 26906351 (+) True XLOC_025387
TCONS_00050079 mRNA upstream 237237 26813058 ~ 26814953 (+) False XLOC_025386
TCONS_00050080 mRNA upstream 237519 26814030 ~ 26814671 (+) True XLOC_025386
TCONS_00050077 mRNA upstream 300371 26734162 ~ 26751819 (+) False XLOC_025385
TCONS_00050074 mRNA upstream 700534 26345732 ~ 26351656 (+) False XLOC_025381
TCONS_00050084 mRNA downstream 17400 27071749 ~ 27277695 (+) False XLOC_025389
TCONS_00050091 mRNA downstream 552156 27606505 ~ 27640823 (+) False XLOC_025394
TCONS_00050092 mRNA downstream 552919 27607268 ~ 27642128 (+) False XLOC_025394
TCONS_00050094 mRNA downstream 587732 27642081 ~ 27663447 (+) True XLOC_025394
TCONS_00050095 mRNA downstream 610515 27664864 ~ 27694673 (+) False XLOC_025395
TCONS_00050071 other upstream 733136 26310494 ~ 26319054 (+) True XLOC_025378
TCONS_00050060 other upstream 857731 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050056 other upstream 900630 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050021 other upstream 1919959 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00049977 other upstream 2914282 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00050085 other downstream 17424 27071773 ~ 27074132 (+) True XLOC_025389
TCONS_00050090 other downstream 352747 27407096 ~ 27407211 (+) True XLOC_025392
TCONS_00050119 other downstream 1777169 28831518 ~ 28850434 (+) False XLOC_025404
TCONS_00050124 other downstream 1806827 28861176 ~ 28866082 (+) True XLOC_025405
TCONS_00050129 other downstream 2112671 29167020 ~ 29167147 (+) True XLOC_025410

Expression Profile

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