RNA id: XM_036955549.1


Basic Information

Item Value
RNA id XM_036955549.1
length 2333
RNA type mRNA
GC content 0.50
exon number 13
gene id LOC110498786
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 30271979 ~ 30309264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTTTTATTTGAGTTCTCTTTAGAAAGTGACGATTGGGGAGAAAGGGGAAGCGGTTGATCAATGCCCAGGTAGCCTACAGGATGGCACCAGCAAGGCGGACGGTGTGGGTTCTTCTCGCGCTGTCGGGTGTTCTGAATTTGCGCTCCTGCTGGACTTTCACTTGTCCGTCGATTTGCAAATGTTCATTGAAGAGCGATACATGTTACAAAGACACGGGAGATAAACTCAGTTGCACGAGGGAAACGCAACTGAGGTCCCAAGCCGCTCCATCGTTTATTCGAAACTTAAGACTAACTCATCTGCCGTTGAATGAAGTTCCAAGCAATGCCTTCAGAGGACTGGTCAACGTGTCCAGAATTGAGATATCTCAGAGTGACTGCACCAGGTACATAAGAAACCAtgcattcctctctctccacagcctaACTGAGATACAGATACAGAACATCAGAAATCTGATCAGTATAGAGAAGGGGGCCTTCACTGATCTGCCCAAGCTGAGATACCTgAGTATCTGTAACACAGGAATAATACACTTTCCAGACTtctccaccatctcctccctggtcatACTGGAGTACTTCTTCCTTGAGCTGGGAGACAACATGCAGCTCCACAGTATACCTGCCAATGCCTTTCAAGGGATCACAGAGGAGAGTGTGTACATGAAAATTATAAAAAATGGATTCAAGGAAATCAAGTCGCACGCTTTCAACGGAACAAAGCTGGATAAACTGATTCTGAAAGACAACAGGTATCTGAGGAACATTCATGAAGATGCCTTTGAGGGAGCATCAGGGCCAACTGTGCTTGACGTCTCCTCCACAGCTCTCGACACACTCCCCCGTCAAGGTTTGGAACATTTAAAGGTCCTGATTGCCCGTTCTACCCCCTACCTGAAGACTCTACCTCCTCTAGAAAGCCTCCTAGAGCTGGAGGTGGCAGAGATTACTTACCCCAGCCACTGCTGTGCCTTTCACACCTGGCGACGCAAAGACAATTTCTACAGGGACCACTCGGCAGACAATGTGACAGACCTGTACGACATCAACCTCCAATACCCAGACCTGCAGCTGAGCCTGTGTCCTGGACCCTTCCAGTGCACCCCGGAGTCCGACGCCTTCAACCCCTGTGAGGATCTGCTGGGATACTCCTTCCTCCGTTCAGTCACCTGGCTCATCATTGTATTCGCTGTGGCCGGGAACATGGCCGTGCTGGTCGTACTGATCATCAGCCACCAGAAGCTCAATGTCTCTCGGTTCCTGATGTGTAACCTGGCCTTCGCAGACCTCTGCATGGGGGTCTACCTCCTCCTCATTGCAGCCATGGACTACCACTCACGCAAGGAATACTACAACCACGCCACGTTCTGGCAGACGGGTGCGGGCTGTGGTGTGGCGGGGTTCCTGACGGTGTTCGCCAGCGAGCTGTCGGTCTACACGCTGACCATTATAACGTTAGAGCGGTGGCACACCATCACTAACGCCATGCACAAGAACAAAAGGCTGCGGCTGAGGCATGTGGTAGCCATGATGGCTGGGGGGTGGGGCTTCTCCCTATTGGCCGCTCTGCTTCCTGTCCTCGGAGTCAGCAGCTACACTAAGGTGTCAATCTGCCTGCCCATGGACATCGAGTCCCTAGCCTCCCAGGTGTATGTTgtagccctcctcctcctcaacgtCACTGCCTTTTTCATCATCTGCTGCTGCTACGTACGCATCTACCTGTCCATCCACAACCCCGACCTAGCAATCCGCCACGGTGACTCCAAGATCGCCAAGCGCATGGCCGTCCTAATCTTCACCGACTTCATCTGCATGGCACCCATCTCTTTCTTCGGCATCTCGGCGGCTCTCCGCATGCCCCTCATCACCGTCTCCCACTCCAAGATCCTGCTCGTCCTCTTCTACCCAATCAACTCCCTCTGTAACCCCTTCCTCTACACCATCTTTACTCGATCGTTTCAGAAGGATATACGTTTGTTGTTGAGTCGCTGTAGTTTTTGCCATGCCAGAGCTGAGTTCTACAGGGCACAGAACCTGGAAGCACACACTATACCGCCTAAGGGTAGTACTACGTCCCCCAGAAAACATCACTCTTTCAGGTTCTACACCTACCACATCAAGATGCAAGGATGCTTTCTCTGCGAGGGAGGCGGAGCAACATGACTAGTCTCAGTAAATCAGAACTGTGggtaaaatcacattttaagccAATAGTTGAATGACAACGAAAACAATTgtctgtaaaaatatatatatatatatatacataaccagtcaaaagtttggacaaacctactcattcaagggtttttctttattttttcta

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016500 protein-hormone receptor activity molecular_function

KEGG:

id description
K04248 LHCGR; lutropin-choriogonadotropic hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1925753 lncRNA downstream 38567 30221372 ~ 30233412 (-) True G1683540
TU1925745 lncRNA downstream 54343 30214493 ~ 30217636 (-) True G1683532
TU1925698 lncRNA downstream 168587 30102340 ~ 30103392 (-) True G1683486
TU1925610 lncRNA downstream 310918 29958050 ~ 29961061 (-) True G1683407
TU1925468 lncRNA downstream 563363 29708164 ~ 29708616 (-) True G1683269
TU1925913 lncRNA upstream 136624 30445888 ~ 30446190 (-) True G1683690
TU1925924 lncRNA upstream 144686 30453950 ~ 30454197 (-) True G1683701
TU1925952 lncRNA upstream 160176 30469440 ~ 30469724 (-) True G1683729
TU1926000 lncRNA upstream 196137 30505401 ~ 30505642 (-) True G1683777
TU1926012 lncRNA upstream 204484 30513748 ~ 30514067 (-) True G1683789
XM_036956152.1 mRNA downstream 113329 30112416 ~ 30158650 (-) True foxn2a
XM_036956150.1 mRNA downstream 113331 30108682 ~ 30158648 (-) False foxn2a
XM_036956151.1 mRNA downstream 114149 30108682 ~ 30157830 (-) False foxn2a
XR_005037977.1 mRNA downstream 178265 30060126 ~ 30093714 (-) False fbxo11a
XM_036956148.1 mRNA downstream 178272 30060126 ~ 30093707 (-) False fbxo11a
XM_036956179.1 mRNA upstream 299302 30608566 ~ 30833829 (-) False LOC110498787
XM_036956180.1 mRNA upstream 299302 30608566 ~ 30833829 (-) False LOC110498787
XM_036956177.1 mRNA upstream 299302 30608566 ~ 30833830 (-) False LOC110498787
XM_036956178.1 mRNA upstream 299302 30608566 ~ 30833830 (-) False LOC110498787
XM_036956154.1 mRNA upstream 299302 30608566 ~ 31165270 (-) False LOC110498787
TU1925354 other downstream 725662 29541315 ~ 29546317 (-) False LOC110499315
TU1927010 other upstream 802291 31111555 ~ 31113686 (-) True G1684661
TU1927277 other upstream 1098330 31407594 ~ 31412844 (-) True G1684920
TU1928979 other upstream 2502443 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 2768546 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 3224409 33533673 ~ 33534276 (-) True LOC110499358

Expression Profile

XM_036955549.1 Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 0.25.
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XM_036955549.1 Expression in each Bioproject

Bar chart with 16 bars.
XM_036955549.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
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