RNA id: XM_036956180.1


Basic Information

Item Value
RNA id XM_036956180.1
length 4824
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110498787
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 30608566 ~ 31165271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagggagagaactagagagagggagagaactagagagagggagagaactagagagagggagagaactagagagagggagaaagagtgggagaTAAATAACATGAACAAAGACCAGCCTGAAAagctgtatctctccctctcctccattcaCTGCccatcagtgtctgtctgtccagtggatagaaagagagagatgaagcccCACATCCCCAGCTTATTTTCACCCAAAATAGGCTCTTCCTCTGCAATGCTCTCTGGCTCCAATGATTCGCTGTTGTGGAGCCTGTTCATTTGCATAGaccctctccctcctgctccgTGGCTGGCTGTTGAagctcccccctccttcctccctctctccctccctctctctctctctctctctcgtcctctctctcctcctcttgctcACATCTTGCTGGAGCTGCGCTCGCTCGCTGAAGCCGTTGCTGCCTGTTTCTCagcctgtgagtgtgtgagagagaggtgtgtgtggctCCGTATACAGAGCAGTCACTCTCTCTCAGTGCTGCCGCGTCGTTGCCTCTCTACTGGGTACTGCAGGGAGAGTAGAGGGAACCTCTAGGAGCGAGGCTTGGCACACCTCGCAGGTACAACCATTCCCGCGCCACCCTCTCGACAGCTGCTGCCCACCACCACAAGCAAATTTTAAAGCTTTACTTCGGATGCACTCAGATTCCTCTAGACATCCTCTGAAAACAGGAAGGAGAACAGGGAGGGAAAACTTGGAAGGAGGGAACATTCCATTTGCTTTGATTAAGGAGATGTTGAAATTGTGCCTGTGATGTTTTTTTCCCTTAAAATCTGAGGCTGATATTCAATGTGGATTTTCGGGAGTTATATCATTTTTTGAGAGGAGAAAATTATCCATTTGATTCTGTGAGCTCTTCCTCGCAGAATAAGaagtgagagaaaaggagagagagaatgcgaGCGAGGAAGTGTGATAGGGGAATTGGAGCAGTGTGAGATTTCTCAGATGCTGTTTGAGGAGTGTGTCCTAATTTATTGAGTGCATAttttttcctcctctctttttctccacaATGAATGATCGTACTTCTTCCATGGTTACCTTTGTACCCTTGTGGATTTCCTAACCCACCGGAAAAAGTGCAAGAAGGCACTCTTTTCTTTTCCCTAAATTTGTTCGTGATTAGCTCTTTTCTGCTGTGGATTCTCTGTGGATTTGTTGGTTGGTCGACAGTGTGAGTGTCTTGGGTTTTGTGAGTGGCGAGAGAGCATTGTGTTGGCAGGGTACTAAGGGGACTATGGGCCATTGGGCTCATCACTAAGGTCCCAAACCTTTATCCTCAACTCGCCTTGCTGGCCTCTCGGGGAACCATGTTGGAAAGTTGGAGGACAAAGCTTGCCCCCACCCCTGGCCCCTCGAGGCCCAGGCAGGAGCACCTCTGCTGGGGCTTGACCTCGTctatctcccctgtctcccctgtctgccTGGTTCTCTGGATGACTGCTCTGGCCCTGGGGTGTGTGGCTGGATCTGGGCCTCACTCGGGGCCACCAGGGGGAGGCACAGAAGCAGTGGAGGGCCACCACCACATTCACCTCAACCATGGGGGCAAGCGTCACCATTCCGTGCCTATCGCCATCCATAGACCGCCTGCCGCCTTGCTACGGGCAGGCCACActggaACTACGTATATATTTGGGCGTGACGGCGGTCTGATCACGTATACATGGCCTCCCAATGACAGGCCCAGCACGCGGGCAGACAGGCTGGCCATAGGCTTCAGCACACAGCTGAAAGATGCTGTTCTGGTGAGGGTGGACAGCTCCTCTGGCCTTGGAGACTACCTGAAGCTACACATTGAAAAAGGAAACATTGCAGTTATATTTAATGTCGGAACGGACGACATAAATATCGAGGAGACAGCAAAGTTTGTAAATGATGGAAAGTACCATATAGTGAAGTTTACGCGGAGTGGCGGTAACGCCACACTACAGGTGGATGACCTACCTGTCATAGAGCGCTATCCCACAGGTCGGCAGCTCACTATCTTCAACAGCCAGACCACCATACAGATAGGTGGCTGGGACCGGGACAGGAGTCGCCCGTTTCAGGGCCAGCTCTCAGGTCTCTACTATAACGGGCTGAAGGTGTTCAACATGGCCACAGAAGGAGATCGTAACATCCGCATCCAGGGCAGCGTGAGGCTGGTGGGGGAGTCGCCCTCGTCCATCACGCCACAGTCAAGTGCCAACACAGCCAACCGGTCGGAGACGTCCACATCCATTATGGAGATCACCACGACGACAGCGTCCAGTAGGAGGGTGAAGCAGACGACGCCACGGGAACCTCAACAGaCGACGGACGATCTGCTGGTGGCATCTGCGGAGTGTCCGAGCGATGACGAGGACATTGATCCCTGTGAGCCGAGCTCAGCTAACCCAACCGGTCCGGCGGTGAAGGGCTACCCTGGTCCATCGGAGGGGGTGTTCCGTGAGTCAAGCAGTACCACTGGGATGGTGGTTGGAATCATAGCGGCAGCCGCCCTCTGTATCCTCATCCTGCTCTATGCCATGTACAAATACCGCAACCGGGACGAGGGTTCTTACCATGTAGACGAGAGCCGTAACTACATCAGTAACACATCGCAGTCCAACGGGACGGTGGTGAAGGAGAAACCGCCAAACGCCGCCAAGACTTCCTCTAAGAGCAAGAAGAATAAAGACAAGGAGTACTATGTGTGATCCTTACTGTCTCTGGTCTTCACCACTGGCCCCTCGCAAAGATTGGACCAATTATTCAAACTTTTTATGACTCAAAAAGACGAATCCGGAGATCGGAAGACCAATAAAAAGTGTATAATAACGAACAAACAaaattaaacaaaaacaacaaaagaacatTTAGTCTTTCATTTTATCTAAGACATGGTGGGTGGTGGTATACTGGAAAGTGAAAAGGAGTAAAAAATGAAACATCTTCCTTTAGATTCTTCTACCCAAGCACACTGGACTGTAAGAAATAGCACCAGGGAGATGGCGGTAGTGTACTGGACTATACTAATGATAAGAAAGGGTGTCTCAACCTTATGGCAAGCTGCAGAATAATCAGATAATCAACTGAAGTACCTATACATCATGGATCAACAAACAAACTAACCAATTAACGCCGTCTGTGACTTGTTCTGTTTATTACCAGGATATTGGTTGGCCAATATCTCACTCTCGAAGTTTGAGTTAAATGTGAGAGGAGAGATATACAATTGAGAAATATacaatattacaacaacaaactcCAATGTTTTCATGTTATCATTTACatatcctgtctttgtgtttgctggGATCTTTAGGAGAAAATACATAAAACACGAAACGCATTAATAAGGTACATGAAGAAAACCCAACTCCAAACATTTCCAACAATGGATGACGAGTGAAAGAAAAGAAACGAGATCATGGGAAGGCAAGGCAACAGTGAAGGAGGAAGTGAAAGGATAAAGATGGTACGTTTGTTTGAGGAATCAGCCAAAGTATTTGCACTTTTTATAGTGGCAGTAATGGCCCAGAACAGACTAATATAAAAAATGGCCGCCCGATCTGTTAACAGTGCAAAGACAAAAGGGCCTACGATTAATCTTGATCTTGAGAGACTTATGTCAAGTTCTATTCAAGATTCATCTTTGCCAGTTAAGAATTCTGGACGACTTGGTTTTCAACATCAGTGTGGAATCTAAGGCAATGTGTTTAACAGAATTGTGGAAGGAGACGTCGGAACGTTGTGAAGACGATCATTCTGATCCTGGAACTCCATGCACGCAAAACGTATCTTACTACAGTTCCAGTAcatatgtttatatacagtacaaccACATCTATATGTGCTTTCTGGACTGTGACAAAGTGGTGTTTTATAGCCTGTTGTATAGATGACCACGCAAACTATATCTGCTCCTCCTCCAACCATTTTtggaataaaaaaataagaaaatgacaaaaatacaaaattaaatgTTATTAAGTGTTGCTAGATATAGAAGATTTTACGATGACATCGATCCGCAATgccatttttggggggggattatTTAATTATTCATTCCGCCTTTATACATGTGTTCCTGTTGAGTTTTTATACAAATGCCAACCTGATCTAATAGATATATTAACCCGGCCCAGTAGTAACCTGACTTGGTCCTCAAACTCTACCATTCAATGATAATAGTGTACAGCAGAGGCATGGCATGATGATGACATGCAGGATGAGGTAACGTCTCCAGGGTTTCACTGCCTTTCTCCCCATTCCCGCCCCCTCCCAATTGCTGGGGCAATAACAGTAACAGACTGCCTTCCTCCCGATACCTGCCCGCCAAACTAAACCTAGCTACTTGAGAATGAAGACCTATATTCcgaatgatgatgataatgatgtatGTGTTTCCAAGTGGTCCTATAATATGATTGTCCAGTGTACGCTTGGGCTGACGGAAACAATCTGAAGAAGAAATAAGACAAAGAAGCAACCATTTCAACCGTTTGTGTGTTTGTCCTGTCACTCTAATGTCAATTCTGTTCTGCTTTCCTGACGACCTGATGTACTCGGAATGAGAATGAGGAGAACTACTATGACCTATAAATAATGATGATTATGAATtcttctttgtttgtttgtttcttctGTTTATTTCTACCTGTGGTATTTTTTTCTACCGTATTTTCTGTTCAAATTGTGACTATTTCTTTATTATTGAAATCAAAGTAAAATTTATTATGgaaaaaaaatagttttgaaaaattaaatgaacaaatgaaataaaatattACCTAAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1926128 lncRNA downstream 23550 30584797 ~ 30585016 (-) True G1683904
TU1926123 lncRNA downstream 25532 30582817 ~ 30583034 (-) True G1683899
TU1926114 lncRNA downstream 29529 30578787 ~ 30579037 (-) True G1683890
TU1926091 lncRNA downstream 47028 30561332 ~ 30561538 (-) True G1683868
TU1926084 lncRNA downstream 49950 30558404 ~ 30558616 (-) True G1683861
TU1926817 lncRNA upstream 1806 30835635 ~ 30836013 (-) True G1684507
TU1926838 lncRNA upstream 42681 30876510 ~ 30876803 (-) True G1684526
TU1926885 lncRNA upstream 102804 30936633 ~ 30956023 (-) True G1684565
TU1926923 lncRNA upstream 155781 30989610 ~ 31044901 (-) False G1684590
TU1926914 lncRNA upstream 185516 31019345 ~ 31044576 (-) False G1684590
XM_036955549.1 mRNA downstream 299302 30271979 ~ 30309264 (-) True LOC110498786
XM_036956152.1 mRNA downstream 449916 30112416 ~ 30158650 (-) True foxn2a
XM_036956150.1 mRNA downstream 449918 30108682 ~ 30158648 (-) False foxn2a
XM_036956151.1 mRNA downstream 450736 30108682 ~ 30157830 (-) False foxn2a
XM_036956149.1 mRNA downstream 514859 30061567 ~ 30093707 (-) True fbxo11a
XM_036956185.1 mRNA upstream 901027 31734856 ~ 31806658 (-) False LOC110499326
XM_036956186.1 mRNA upstream 901027 31734856 ~ 31806658 (-) False LOC110499326
XM_036956193.1 mRNA upstream 1309680 32143509 ~ 32225826 (-) False LOC110499330
XM_021576410.2 mRNA upstream 1309680 32143509 ~ 32226222 (-) False LOC110499330
XM_036956192.1 mRNA upstream 1309680 32143509 ~ 32226222 (-) True LOC110499330
TU1925354 other downstream 1062249 29541315 ~ 29546317 (-) False LOC110499315
TU1927010 other upstream 277726 31111555 ~ 31113686 (-) True G1684661
TU1927277 other upstream 573765 31407594 ~ 31412844 (-) True G1684920
TU1928979 other upstream 1977878 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 2243981 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 2699844 33533673 ~ 33534276 (-) True LOC110499358

Expression Profile