RNA id: XM_036956163.1


Basic Information

Item Value
RNA id XM_036956163.1
length 7392
RNA type mRNA
GC content 0.47
exon number 25
gene id LOC110498787
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 30608566 ~ 31165271 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aCCCGCTCGCTGTCTTCTGACAGTCTGTTGCAGAGCGCAGCAGGGAGGCAGATTGCACCGTTTGCACCGTTTTTCCCTCACCAAAATTACAGGATTTTCCCGGGACTCTGTTTATCTACATTTATTTCGTTTTCTGAGGATCGAAAAGGAGGAATAACCTAGATCGTCTTCTCATTATGTTGTAAGCTTAAGCTTTTTGGATCAGAGACTGGCCttgggaaaaaaaagaaaagctcCATGCGATAATCAATCAAACAATAACAATCGTTCTGTTTGGCGGAGGATGCAGGGTGAGAAGCCAAAAGCAATGACTCTGGATGCCGGCCACATCTCGCTGGTGTGAATAGGATGGTTATTGACGCCGTTTCAACAGCAGTAGAACCGACTGGTGCGCTCTAGCTGCCTGGCACCGAAAATAAGAAACattcaaaaatccagaaaaataaaAGGCCTGATGGAAATTGGATTCTGAATCACCATTGCCTGTTTTTGGAAGAAAATCAGGATTATAGAATAAAACTAATAGGGAGACAGAAGATATTGAcgaataaaaacaaatatataggACTGAGAAATTGGGATTTAGGCGCGACAGATAGTGGTCCTATATTCAAATATGGTATTTTCTTCGGGAGACTAGTGTAGCTTGCTGGTAGGCTATGACAACAAAATAATTCATTTAGGTTTACAATGTGTCAGTTCATTTACACAATTCTTAGTGGTAAGTCAGCGTATTATATCACACTTACCCCTAACTTCATCTAGCTTGATAAAAGACAATTCCGTCTGAAATCTGACTCAGCGGTATTGTAGCCTAGACCTAAAGAACAATTCGGTCACATCATGGTTCTTGCAATGCGGCATGGCGCCCATCTAATATGGGTAGGCCTTCTCTTGTGCTGTATGGTAGACATGGGGGCAACTATGGAGTTTACAGGCGCAGAGGGCCAGTGGGCCAGGTTTCCAATGTGGAATGCATGTTGTGAGAGTGAAATGAGCTTCAACATGAAAACTAAGAGTTCCCACGGGCTGTTAGTGTACTTCGATGACGAGGGATTCTGCGACTTTTTAGAACTCCTAATACACAACGGTAAACTCAGTCTTCGATTCTCCATCTTCTGCGCTGAGCCTGCAACGGTTCTAACCAACACAGCGGTCAATGACAGCCAGTGGCATGCTGTGACAATATGGAGAAACTTTAAAAACACAACGCTAATGGTGGACAATGAAGTGAAGTGGGTCGAAGTGAAGTCGAAAAGAAGGGATATGACTGTCTTCAGCCACTTGTTTCTTGGGGGAATACCACCGGAATTACGATCTGTGGCTTTAAGGTTAACATCAGCTGTGGTCAAGGACCATGTACCTTTTACCGGATGGATAACGGACATAAAGGTCAACAATACGGAATCGGCGCTTTTAAACAGCGCTGGGGTCATTAACGACCTCTGTGGTGCAGCAGCCAACATGTGTTTAAATGGAGGGGTCTGCAATGTCATTAACGATGAACCCACGTGCGACTGCTCGCAGACTGACTACCAGGGCAAAGACTGCAGCGAAGAAGACAACCATGTTGAAGGTCTGGCGCACTTGATGATGGGCGACCAAGGAAAAGAAGACTACGTGGCGACCTTCAAGGGATCCGAGTTCTTCTGCTACGACCTGTCCTTGAACCCGATCCAGAGCAGCAGCGACGAGATCACCCTGTCCTTCAAGACGTTACAGAGGAACGGTCTGATGCTTCACACGGGGAAGTCTGCAGACTACGTCAACCTGGCCCTGAAAAACGGAGCTGTATCGCTGGTCATTAATTTGGGGTCTGGGGCCTTTGAAGCTCTGGTGGAGCCTGTCAATGGGAAATTCAATGACAATGATTGGCATGATGTCAAAGTTACAAGGAATCTACGTCAGCACTCAGGCATTGGACACGCTATGGTAACTATATCCGTGGATGGGATACTGACCACCACAGGGTATACTCAAGAAGACTACACCATGCTAGGCTCCGACGACTTTTTCTATGTTGGCGGGAGTCCTAGCACGGCTGACCTCCCTGGATCACCTGTTAGCAACAACTTTATGGGTTGTCTGAAAGAGGTTGTGTATAAAAACAACGACGTGCGACTCGAGCTCTCCAGGATGGCCAAACAAGGTGATGCCAAAATGAAGGTTCACGGCATTGTGGCTTTTAAATGCGAGAACGTGGCGACCCTTGACCCCATCACCTTCGAGACCCCTGGGTCCTTCATCACGCTCAACAAGTGGAACGCCAAGAAGACGGGCTCCATCTCCTTCGACTTCCGTACCACAGAGCCTAACGGGCTTCTCCTCTTTAGCCACGGAAAGCCCAAACAGGCTCCCAAGGATTCCAAGAGCCCCCTGACACTGAAGGTGGACTTCTTTGCCATCGAGATGCTGGATGGCCACTTGTATCTATTGCTGGACATGGGGTCAGGGACCACCAAGACCAGAGCCATCAACAAGAAGGTCAACGATGGGGAGTGGTACCACGTAGACTTCCAACGGGACGGCCGATCAGGTACCATCTCCATCAACACCCAGCGCCAGGCCTACACGGCCCCAGGAGAGAGTGAGATCCTGGACCTGGATGATAACCTGTACCTGGGAGGACTACCAGAGAATAAACTAGGCCTGGTCTTCCCCACAGAAGTGTGGACGGCTCTCCTGAACTATGGCTACGTGGGCTGCATCCGGGACCTGTTCATCGATGGCCAGAGTAAAGATGTCCGCCGCATGGCCGAGGTTCAGAAGGCTACCGGAGTCAAACCATCCTGCTCTAAAGAGCCGCCCAAGCAGTGCCTGTCAAACCCCTGTCAGAATAACGGTGTCTGCCGTGAGGGATGGAACCGTTACGTCTGTGACTGCTCAGGGACGGGATACCTGGGACGCTCCTGTGAGAGGGaTGCGACCATCCTGAGTTATGACGGCAGTAAGTTCATGAAGATCCAGTTGCCGGTGGTGATGCACACAGAAGCGGAAGACGTGTCGCTACGGTTCCGTTCTCAACGGGCATATGGTGTGCTGATGGCCACAACGTCACGTGACAGCGCCGACACGCTGCGCCTGGAGCTGGAGACTGGCCGTGTCCGCCTGACGGTCAACCTAGACTGTATCAAGATTAACTGTACTGCCAGCAAGGGTCCAGAGACCATATTTGCTGGTCAGAACCTGAATGATAACGAGTGGCACACGGTGCGTGTGTTCAGGAGGGGAAAGAGTTTGAAACTCACCGTAGATGATCTTCAACCTGTAGAAGGTCAAATGGCAGGTGACCACACCCAGTTGGAGTTTCACAACATTGAGACGGGTATCGTGACGGAGAAACGATTCATGTCCATGGTGCCTTCCAACTTCATAGGCCACCTCCAGAGCCTCTCCTTCAACGGCATGGCCTATATAGACCTGTGTAAGAACGGTGACATTGACTACTGCGAGCTCAACGCCATGATCGGCTTCAAGAACATCATTGCTGATCCGGTCACGTTCAAGTCACGGTCGAGCTATTTGGCTCTGACCACCCTGCAGGCCTACTACTCTATGCACCTGTTCTTCCAGTTCAAGACCACCTCGTCAGATGGACTCATACTGTTCAACAGTGGGGACGGAAACGACTTCATCGTGGTTGAGCTGGTCAAGGGCTACCTGCACTACGTATCAGACCTGGGGAACGGAGCTCACCTGATCAAGGGCAACTCCAACAAGCCCCTGAATGACAACCACTGGCACAACGTCATGATCTCACGAGACACTAACAACCTCCACACCGTCAAGATCGACACCAAGGTCACCACCCAGACCACCATGGGAGCCAAGAACCTGGACCTGAAGGGTGACCTGTATATTGGTGGCGTGGCCAAAGAGACGTACAAGGAGCTTCCCAAGCTGGTGCACGCCAAAGAGGGCTTCCAGGGTTGCCTAGCATCGGTGGACCTGAACGGACGCCTCCCGGACCTGATGTCGGACGCCCTGGCATGTGTGGGCCAGATAGAGAGAGGCTGcgaagGCCCCAGTACAACGTGCCAGGAGGACTCGTGTGCAAACCagggtgtgtgtctgcagcagtgGGAGGGGTTCAGCTGTGATTGTAGCATGACTTCTTTCGGAGGGCCACTCTGCAACGACGctggaACTACGTATATATTTGGGCGTGACGGCGGTCTGATCACGTATACATGGCCTCCCAATGACAGGCCCAGCACGCGGGCAGACAGGCTGGCCATAGGCTTCAGCACACAGCTGAAAGATGCTGTTCTGGTGAGGGTGGACAGCTCCTCTGGCCTTGGAGACTACCTGAAGCTACACATTGAAAAAGGAAACATTGCAGTTATATTTAATGTCGGAACGGACGACATAAATATCGAGGAGACAGCAAAGTTTGTAAATGATGGAAAGTACCATATAGTGAAGTTTACGCGGAGTGGCGGTAACGCCACACTACAGGTGGATGACCTACCTGTCATAGAGCGCTATCCCACAGGCAACAATGATAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGACTTGGTCGAGTAGTTGACGAATGGCTACTCGACAAAGGTCGGCAGCTCACTATCTTCAACAGCCAGACCACCATACAGATAGGTGGCTGGGACCGGGACAGGAGTCGCCCGTTTCAGGGCCAGCTCTCAGGTCTCTACTATAACGGGCTGAAGGTGTTCAACATGGCCACAGAAGGAGATCGTAACATCCGCATCCAGGGCAGCGTGAGGCTGGTGGGGGAGTCGCCCTCGTCCATCACGCCACAGTCAAGTGCCAACACAGCCAACCGGTCGGAGACGTCCACATCCATTATGGAGATCACCACGACGACAGCGTCCAGTAGGAGGGTGAAGCAGACGACGCCACGGGAACCTCAACAGaCGACGGACGATCTGCTGGTGGCATCTGCGGAGTGTCCGAGCGATGACGAGGACATTGATCCCTGTGAGCCGAGCTCAGGTGGGTTAGCTAACCCAACCGGTCCGGCGGTGAAGGGCTACCCTGGTCCATCGGAGGGGGTGTTCCGTGAGTCAAGCAGTACCACTGGGATGGTGGTTGGAATCATAGCGGCAGCCGCCCTCTGTATCCTCATCCTGCTCTATGCCATGTACAAATACCGCAACCGGGACGAGGGTTCTTACCATGTAGACGAGAGCCGTAACTACATCAGTAACACATCGCAGTCCAACGGGACGGTGGTGAAGGAGAAACCGCCAAACGCCGCCAAGACTTCCTCTAAGAGCAAGAAGAATAAAGACAAGGAGTACTATGTGTGATCCTTACTGTCTCTGGTCTTCACCACTGGCCCCTCGCAAAGATTGGACCAATTATTCAAACTTTTTATGACTCAAAAAGACGAATCCGGAGATCGGAAGACCAATAAAAAGTGTATAATAACGAACAAACAaaattaaacaaaaacaacaaaagaacatTTAGTCTTTCATTTTATCTAAGACATGGTGGGTGGTGGTATACTGGAAAGTGAAAAGGAGTAAAAAATGAAACATCTTCCTTTAGATTCTTCTACCCAAGCACACTGGACTGTAAGAAATAGCACCAGGGAGATGGCGGTAGTGTACTGGACTATACTAATGATAAGAAAGGGTGTCTCAACCTTATGGCAAGCTGCAGAATAATCAGATAATCAACTGAAGTACCTATACATCATGGATCAACAAACAAACTAACCAATTAACGCCGTCTGTGACTTGTTCTGTTTATTACCAGGATATTGGTTGGCCAATATCTCACTCTCGAAGTTTGAGTTAAATGTGAGAGGAGAGATATACAATTGAGAAATATacaatattacaacaacaaactcCAATGTTTTCATGTTATCATTTACatatcctgtctttgtgtttgctggGATCTTTAGGAGAAAATACATAAAACACGAAACGCATTAATAAGGTACATGAAGAAAACCCAACTCCAAACATTTCCAACAATGGATGACGAGTGAAAGAAAAGAAACGAGATCATGGGAAGGCAAGGCAACAGTGAAGGAGGAAGTGAAAGGATAAAGATGGTACGTTTGTTTGAGGAATCAGCCAAAGTATTTGCACTTTTTATAGTGGCAGTAATGGCCCAGAACAGACTAATATAAAAAATGGCCGCCCGATCTGTTAACAGTGCAAAGACAAAAGGGCCTACGATTAATCTTGATCTTGAGAGACTTATGTCAAGTTCTATTCAAGATTCATCTTTGCCAGTTAAGAATTCTGGACGACTTGGTTTTCAACATCAGTGTGGAATCTAAGGCAATGTGTTTAACAGAATTGTGGAAGGAGACGTCGGAACGTTGTGAAGACGATCATTCTGATCCTGGAACTCCATGCACGCAAAACGTATCTTACTACAGTTCCAGTAcatatgtttatatacagtacaaccACATCTATATGTGCTTTCTGGACTGTGACAAAGTGGTGTTTTATAGCCTGTTGTATAGATGACCACGCAAACTATATCTGCTCCTCCTCCAACCATTTTtggaataaaaaaataagaaaatgacaaaaatacaaaattaaatgTTATTAAGTGTTGCTAGATATAGAAGATTTTACGATGACATCGATCCGCAATgccatttttggggggggattatTTAATTATTCATTCCGCCTTTATACATGTGTTCCTGTTGAGTTTTTATACAAATGCCAACCTGATCTAATAGATATATTAACCCGGCCCAGTAGTAACCTGACTTGGTCCTCAAACTCTACCATTCAATGATAATAGTGTACAGCAGAGGCATGGCATGATGATGACATGCAGGATGAGGTAACGTCTCCAGGGTTTCACTGCCTTTCTCCCCATTCCCGCCCCCTCCCAATTGCTGGGGCAATAACAGTAACAGACTGCCTTCCTCCCGATACCTGCCCGCCAAACTAAACCTAGCTACTTGAGAATGAAGACCTATATTCcgaatgatgatgataatgatgtatGTGTTTCCAAGTGGTCCTATAATATGATTGTCCAGTGTACGCTTGGGCTGACGGAAACAATCTGAAGAAGAAATAAGACAAAGAAGCAACCATTTCAACCGTTTGTGTGTTTGTCCTGTCACTCTAATGTCAATTCTGTTCTGCTTTCCTGACGACCTGATGTACTCGGAATGAGAATGAGGAGAACTACTATGACCTATAAATAATGATGATTATGAATtcttctttgtttgtttgtttcttctGTTTATTTCTACCTGTGGTATTTTTTTCTACCGTATTTTCTGTTCAAATTGTGACTATTTCTTTATTATTGAAATCAAAGTAAAATTTATTATGgaaaaaaaatagttttgaaaaattaaatgaacaaatgaaataaaatattACCTAAGTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1926128 lncRNA downstream 23550 30584797 ~ 30585016 (-) True G1683904
TU1926123 lncRNA downstream 25532 30582817 ~ 30583034 (-) True G1683899
TU1926114 lncRNA downstream 29529 30578787 ~ 30579037 (-) True G1683890
TU1926091 lncRNA downstream 47028 30561332 ~ 30561538 (-) True G1683868
TU1926084 lncRNA downstream 49950 30558404 ~ 30558616 (-) True G1683861
TU1927055 lncRNA upstream 31845 31197115 ~ 31197863 (-) True G1684705
TU1927067 lncRNA upstream 53217 31218487 ~ 31255183 (-) True G1684715
TU1927137 lncRNA upstream 145485 31310755 ~ 31311415 (-) True G1684784
TU1927138 lncRNA upstream 146334 31311604 ~ 31311813 (-) True G1684785
TU1927185 lncRNA upstream 179523 31344793 ~ 31345097 (-) True G1684832
XM_036955549.1 mRNA downstream 299302 30271979 ~ 30309264 (-) True LOC110498786
XM_036956152.1 mRNA downstream 449916 30112416 ~ 30158650 (-) True foxn2a
XM_036956150.1 mRNA downstream 449918 30108682 ~ 30158648 (-) False foxn2a
XM_036956151.1 mRNA downstream 450736 30108682 ~ 30157830 (-) False foxn2a
XM_036956149.1 mRNA downstream 514859 30061567 ~ 30093707 (-) True fbxo11a
XM_036956185.1 mRNA upstream 569586 31734856 ~ 31806658 (-) False LOC110499326
XM_036956186.1 mRNA upstream 569586 31734856 ~ 31806658 (-) False LOC110499326
XM_036956193.1 mRNA upstream 978239 32143509 ~ 32225826 (-) False LOC110499330
XM_021576410.2 mRNA upstream 978239 32143509 ~ 32226222 (-) False LOC110499330
XM_036956192.1 mRNA upstream 978239 32143509 ~ 32226222 (-) True LOC110499330
TU1925354 other downstream 1062249 29541315 ~ 29546317 (-) False LOC110499315
TU1927277 other upstream 242324 31407594 ~ 31412844 (-) True G1684920
TU1928979 other upstream 1646437 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 1912540 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 2368403 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 2378416 33543686 ~ 33544238 (-) True G1687007

Expression Profile