RNA id: XM_036956184.1


Basic Information

Item Value
RNA id XM_036956184.1
length 2815
RNA type mRNA
GC content 0.47
exon number 13
gene id erlec1
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31713706 ~ 31725878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTGACATGTTTGTATACGGTATACACGCatggaaacgtggttagtgaAGCCGATATGTCAGATGTGCTTTAaactgaactataaccagacaaCTGGGTAATACATTTGGACTTACTTTTCAGTTTCAGTAAACGCTAACACGGCTGTACCGGAAATACACGTGGCAAGCGACGAGCTATTTCCTGGTTGCTGTGTTGACAAACGAAAGAGACAGCCAGATGGATTCATAATTGTACAATTACCCGGAAACTAAACCAGTTTTATCGGTGGTTAGCTATCTTACGCATTGACAGGCACCATAGAAGGTAGTTAGCGAACCAGCCTTGCAGAGGCAATGGACCGGACTAGGCTGCTGTTCGTGTTGTTTGGGGGTTTGTCGgagttgtgttgtaatgtgtcgGCTAACAGAGGGGGATCTCCTTCGTTTACTGATGAAATCCCATTCAAAATCAACTGGCCCGGAGACGAATTCACCTTgCCAACCTCCGGTGCCCTCTACAAAGATGATGACTTTGTCATCATGACAACAACAGAGAAGGAGAAATACAAATGTCTCCTGCCTTCCTTGTCAAATGGAGACGACGATGATGTCAAGGAGTACGCTGGTCCCACTCCAGGTGATCTACTGGACCCACTGTTCAAACAGAGCAGCTGCTCCTACAGAATCGAGTCATACTGGACGTATGAGGTGTGTCATGGGAAGCATGTGAGACAATACCATGAAGAGAAGGAGACGGGACAGATCAAACTTCAGGAGTACGTCTTGGGAAGCATGACCAAGAAGACTGAATCTTCAACCACTTCAGGAACAGAGACTGCAGAGAAAGTTGAGGAGACGAAACCAGAGGAGTCAGAACCGGAGAAAGAGGTTCCCACTAAGAACGTGGAGGGCCAGCTCGCTCCATACTACCCGGTGTTGATGGGCCACGGGACGGCCTGCGTCCTGAAACAGAACACGCCTCGCTCCACCAACGTGCTGTATGTCTGCCACCCCGAAGCAAAGCATGAGATCCTCTCTATTGCTGAGGTCACTACCTGCGAGTACGAAGTAGTGGTGCTGACCCATCTGATCTGTGcacaccccaaatacagGTTCAAGTCGTCCCCAGTGAATGCCATCTTCTGCCAGGCCCTGTCTGGTTCTCCCCTGCAGCCTCACAGTCTCTCTCAGATGAACCGAGAGCAGGAACAGCTACTGAAACCTCCCTTCAGTGCTCCTACTGccccagagatggagagagagGAAGAGAGTATGTCCCCGGTGAGAGAGGAGGCCTTCTCCTCTACCCATAAGCCCCTGGTGGTGGGCGGGCAGACTCATATTACAGTGGGAACCACCCACATCTCCCGCCTGACGGACGAGCAGCTGATCAAAGAGTTCCTGAGTGGCTCCTACTGTCTCCATGGGggagtGGGATGGTGGAAGTATGAGTTCTGCTATGGGAAGCATGTGCATCAGTACCATGAGGATAAGGAGCAAGGGAAGAACATGGTGGTAGTGGGCAGTTGGAACACTGAGGAACACCTGGAGTGGGCCCAGAAGAACGTGGCCCGGTCCTACCAGCTCAAAAACGATGGGGTGCAGAAAGTAAAACTGGTGTCTCACTTCTACGGCCACGGGGATGTGTGTGACATGACGGGGAAACCCAGACAGGTCATCGTCAAGCTCAAGTGTAAGGAGTCTGAGTCTCCCCATGCCGTCACTGTGTACATGCTGGAGCCTCAGACCTGTCAGTACGTCCTTGGGGTTGAGTCTCCAGTCATATGCCAGATCCTGGACACAGCTGATGAGAAAGGCCTTCTATCTGTCACCAGCTAACAGAACAGGAGGCCTGAGAGATGAAGAAGAGGGATGAGCAGAGGGGAATAAGAAGCGCAATAGAAAAGGACATGGATTTAGGCGGCATAAAACGGACAACTGAAGAATGGATGCACCAAGGCCCATGGCACTGCTCAGGAGGTTCAGACAGACATGGAGAAAGTGTTGATCCTGGAACGGCCCCTGGAAGCCAGGACCACAGTCCCTCGCTAATGCCCTGGCTTAGACCTCCTCTATGGACTGTACCAGACCCATTCTGCTTAAAAAGCCTTATATAAAAGCATGGAAATCCTATTCTAAATGGGACAGAGACTCACAGAATGTGACCCTGCTCACTCCACAAGGCAGTGGATCTATGGCCTGGACTTCATATCTTCCTTGTATGCTTTATCTTCGGCACATTAGTTCTAGTGTCTTTTCTGGCCATATGCCAGGACAGAGAACCACCAATCATTCAGATAACCTCATCAGCAGAACCAGTTTCCATGTTGTAGTCGGTTTTATTGTCAACATTCTAAATTATCGTAATTTATTTCAGATTGATTTGATGCTTGTCCGTGACACTTTGGTTTTGTAGATATCTTTGAGCAAGGTCAGTTTGAATTTTAAAATGTGCAGACAAACTAACTGTGGGTATAGTAAGATTGGGGTTCTGGTGTCATggttgggatcaattccatttcaattcagtcgattcaggaagtaaactgaaattccaaatgCCTCAGTATTTCCTCATTCAAAAGCAATAATTTAAATTGGGATTTGAATTTgccagtttacttcctgaattgaccccGACCATGGTTGTTATGTTACAGGGTGAGTGAGAGTAACTTAACTTGATGTGCTGTGAATTCAAATCCAAATTTGAGTTGTGATGAACATTTGTTACGTACTGAATCAGATGTTTCCTGTGAATTTCTAAAtatggtgtgttctatggttaaaatgaggggggaaaaaaatagttaaataaaaatataacaaAAATGA

Function

GO: NA

KEGG:

id description
K14008 ERLEC1, XTP3B; endoplasmic reticulum lectin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927653 lncRNA upstream 4145 31709330 ~ 31709561 (+) True G1685282
TU1927652 lncRNA upstream 4544 31708945 ~ 31709162 (+) True G1685281
TU1927651 lncRNA upstream 5999 31707504 ~ 31707707 (+) True G1685280
TU1927650 lncRNA upstream 6735 31706758 ~ 31706971 (+) True G1685279
TU1927648 lncRNA upstream 9035 31704395 ~ 31704671 (+) True G1685277
TU1927664 lncRNA downstream 8991 31734869 ~ 31736220 (+) False G1685291
TU1927667 lncRNA downstream 10435 31736313 ~ 31738506 (+) False G1685291
TU1927668 lncRNA downstream 10435 31736313 ~ 31738506 (+) True G1685291
TU1927854 lncRNA downstream 188218 31914096 ~ 31916230 (+) True G1685473
TU1927857 lncRNA downstream 196388 31922266 ~ 31922621 (+) True G1685476
XR_005037978.1 mRNA upstream 202529 31495094 ~ 31511177 (+) True LOC110499596
XM_036955550.1 mRNA upstream 272710 31440277 ~ 31440996 (+) True LOC118942000
XM_036956153.1 mRNA upstream 1472240 30219786 ~ 30241466 (+) True LOC110499324
XM_021576403.2 mRNA upstream 1496059 30194269 ~ 30217647 (+) True LOC110499323
XM_021576400.2 mRNA upstream 1653519 30025625 ~ 30060187 (+) True msh6
XM_036956188.1 mRNA downstream 96882 31822760 ~ 31978074 (+) False wdr27
XM_036956187.1 mRNA downstream 96906 31822784 ~ 31978074 (+) False wdr27
XM_036956189.1 mRNA downstream 308321 32034199 ~ 32073088 (+) False thbs2a
XM_036956190.1 mRNA downstream 308322 32034200 ~ 32073088 (+) False thbs2a
XM_036956191.1 mRNA downstream 308414 32034292 ~ 32073088 (+) True thbs2a
TU1924589 other upstream 2137148 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2137148 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2255785 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 2935297 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 2987211 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 928476 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1451415 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2599959 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3655831 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3655831 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile