RNA id: XM_036956186.1


Basic Information

Item Value
RNA id XM_036956186.1
length 7999
RNA type mRNA
GC content 0.51
exon number 43
gene id LOC110499326
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31734856 ~ 31806658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGTAGTTCGCCATTAAACCCataaaataagaaaaaaacattttcatcGACTTTGCTTgagattgtttttttaaatggcgACGTATCACAAATAATTGAATGTAGGTTGACCGTGAATGGACTCACATTCCAGTACAGTAAGTGGCGGTGTATGCACTTTACGATCcgccaacccaatcccaaagaagaagaagaagaaacatcTAATTATTGTATCTTGCGAAAATGACTGTAGGGGAGGAGCCGATTGCGTGGGATGGGTGTCTGGTAAAGAAACGTTGAAAGTAATCAGATGGATATaagtagctagctaaattagaAGGAACCCATTTTAAGTGCTAACGCACTCTTTCAAGAAAGCATATTCGACTGAATTGGATATTTACATTTTTGTGTAGCCATATCAATGCCCAAGTGTGATATTTAGCTAGCATGGTGTTACAAAGGAAACATTAAGATgttgtagctagcaagctaacgttatcaCGAAGTTACACAGAAGGATACAAACTGATCATCCAAAGCTAGCTGATATACTACGAGCCAACGTTAGTGAACTACATTATCTTGTCAAGCAACGAAGAGAACACAACCAACATTTGGGAAATTGTAATATGAAAGAAGACGTGTCGGAGAAATTAGGATTTGTCCCTCAAAAAGACATCGTCTACAACAAACTTCTTCCATACGCGGATATATTAGACGAGGAATCCAATGACCTTTTGGGTAAAATCAAAGGAAACTTGGGCCGGGCTGTCCAGCTTCGAGAGATATGGCCGGGTGTCTTGTTTTGGACAAGGAAACTTTCCACGTACATGCGGCTGTACGGCAGGAAGTTCAGCAAGGAGGACCATGTGCTGTTTATCCAGCTGCTGTACGAGCTGATCACCATCGACAAGCTGGAGATCAGTATGATGCAAGGACTAGCCCGGCTGCTCATCAACCTCCTTAAGAAAAGAGAGCTGCTGTCGCGGGAGGATCTTGAGTTGCCTTGGAGACCCCTGTATGAGCTGCAAGACAGGATCCTCTACTCAAAGACTGAACACCTGGGACTAAACTGGTTCCCCAACTCGGTGGAAAACGTTTTGAAAACACTTGTGAGAAGCTGCAGACCGTACTTCCCGGAGTCGGCCACCCAGGAGATGTTGGAGGAGTGGCGTCCACTGCTCTGTCCATTTGATGTGACCATGCAGAGAGCTATAGGATACTTTGAGCTCTTCCTCCCCACCACCCTACCCCCAGAGCTGCACCACAAGGGCTTTAAGTTATGGTTTGATGAACTCCTCAGCTTGTGGGTGGCAGTACAGAACCTTCCAGGTTGGGAGGTGCATCTTGTCAACCTGTTTGCCCGGTTGGCCAACGACAACATTGGCTACATTGACTGGGACCCTTATATACCCAAGATCTTCACCAGGATCCTACGTAGTCTGAACCTCCCGGTGGGGACCAGTCAGATGCTGGTTCCCAGATACCTGACAAACGCCTATGACGTCGGCCACGTGGTCCTCTGGGTCTCAGCTTTACTGGGAGGCCCCAGTAAGCAAGCCCAGGCTCAGCTCAGTGGCCTTTTCAACAGCATCACATCTTTCTTCCACCCATCCAACCATGGACGCTGGCTGATGAAGTTGATGAAGCTGTTGCAGCGCCTCCCGGCCAGTGTGGTGCGGCGGCTCCACCGGGAGCGCTACCGGAAACCCACGTGGCTCACGCCGGTACCGGACAGCCACAAGATGACAGAGGCGGACATTACGGCGTTCGTGGAGAGTATGATGCAGCCGGTGCTGCTGGCCATGTTCAGTAAGACAGGCAGTCTGGACGCTGCTCAGGCCTTGCAGAACCTGGCCCTCATGAGGCCCGAACTTGTCATACCACCAGTGCTGGAGAAAACCTACCCTGCTATGGAGACACTGACAGAGCCCCACCAACTGACTGCCACCCTGAGCTGTATGATCGGTGTGGCTCGCAGCCTGGTGTCTGGGGGCCAGCGCTTCCCCGAGGGCCCCACACACATGCTGCCCCTCCTCATGCGGGCCCTTCCCGGGGTCGACCCCAACGACTTCAGCAAGTGCATGATAACATTCCAATTCATTGCTACGTTTGCGACTCTTGTGCCTTTGGTGGACTGTTCATCTGCTGTTCATGAAAGGAGCGACctgacagaggtggagagagagatgtgctcAGCCTCTGCAGAGTTTGAGGACTTTGTTCTTCAGTTCATGGACAGGTGTTTTGCCCTGATAGACAGCAGTACTCTAGAGCAgaccagagaggagacagagacagagaagatgaCCCATCTGGAGAGCCTGGTGGAGCTGGGACTATCTTCTACCTTCAGCACCATCCTCACACAGTGCTCCATAGACATCTTCAAGGTGGCTCTGGAGAAGGTCTTCAACTTTGCCACCACCAACATCTTTGAGACTCGTGTGGCTGGCAGGATGGTGGCTGACATGTGCAGAGCAGCTTCCAAGTGTCACCCGGCACAGTCTCTGAAGCTTTTTGTGCCCCACTGCTGCAATGCCATAAACCAGATCGCTGTCAATGAAGAGGTGTTGAGTGAGGAGGAACTGGATAAGGAGTTACTATGGAACCTTCAGCTACTGTCAGAGGTGACTCGTGTGGACGGGGACAAGATCCTCCCCTACAGCACCCAGCTGGTTCAGATCCTGCAGCTGACCCTCCACCTGAAGTGTAAACAGGGCTACACCCTGGCCTGTAACCTGCTGCATCATATCCTGAGGTCTACAGCCCTCATCTACCCCACAGAGTACTGCAGTGTACCTGGAGGCTTTCAGCAGCCCACACAGGACTACCTGCCCATCAAGgaTTGGGGTCGTCCGGGGGACCTGTGGAACCTGAACATCCAGTGGCACGTCCCCAGAGTGGAGGAGACCAGCTTTGTGTTCTACGTTCTAGACCTGATCCTACAGCCAGAGCTGCTCCGACTACAGAGATACGCCCAGGGGGAACGGGACATGACCAGGGATGACGTCCTACAGAGTTTGTCCATTGTACAGCACTGCCTTCTGGGAGCAGGTAGCCTGTTGCCCCTGCTGCAAGGAGAGCCCATCCCTGAACTGGTGACTAGCATGGTGAATCTGGGGGAGACTAACCTCTTCACAGGGATGGCCGATGaTGTGTCCAGAGAGAACTACAGAGATGCTATCTGCAGAGTGATGAGGCAGCTTCTACATCACATTCTGGAGCACTCAGAGGACGACACCAAGTCTCTGTTCTCCATCATCAAGATCATCAGTGACCTGCTGCACTTCAAAGGCTCCCACAAACAAGAGTTTGACTCTCGCTGGAAGAGCTTCAACCTGGTCaagaagtccatggagaacaggCTTCACGGCAGGAAGCAGCACATCCGAGCCCTGCTAATCGACAGAGTCATGCTACAGCACGAGCTGCGTAAGCTAACAGTGGAGGGGTGTGAGTACAAGAGTATCCACCAGGAACTGATGCGGGATCTGCTGCGGCTCTCTACCAGCACCTACAGTCAGGTGCGTAGCCGGGCTCAGAGTGTGCTGTTCACAGCTCTGGGGACCTATAACTTCTGCTGCCGGGACCTGATCCCCCGTGTGCTGGAGTTCCTGGAGCCAGACCGCTCCGACGTCACACAACAGCAATTCAAAGGTGCCTTGTACTGTCTCTTGGGGAACCATAGTGGGGTGTGCCTGGCCAACCTGCACGACTGGGACTGCATCACCCTGACCTGGCCTGCCATCGTCCGCTCAGGACTCAGCTCAGCTATGTCCCTGGAGAAGCCCTCCATCGTCCGCCTGTTTGACGACCTCGCTGACAAGGTCCACCGCCAATACGAGACCATTGGCATCGACTTTGCTATCCCGTCAGAATGTCGGGCAGCGGCGGTGCAGCTCCAGACCTCCGGTGTTCCCCTGCCTCGGGACCCTGTCCCCTCAGACCAGGAAGAAGCAGAGGGCCTCAGGAAGCAGGAGGAGAAGAACCTCGACTCAGTTCAGAAATATGAGAGTCTGGTTGGTGAACTTCTGGACTGCCTCAACGACAGAAACATGCCCTGGAAGTTTGAGCACAATGCCATTGGATTCATGTCTCTGTTGCTGAGAGATGaccaccctctcccctcccctgctgTCCTGTTCTTTGTCAAGAGCCTCAACCACGACTCGCTCCTGGTCCGCAAGTTGGCGATATCAGCAGTGGCAGGGATCATGAAGCAACTCAAGAGGCCGCATAAAAAAGTACCAGTCAGCCCCAACGAGCTCTgTGGTCTAAAGGAGCCGGCCGGTATGATAGCAGGAGACAGGCCTGATAACCAGTGGCTCCAGTATAACAGTAGCAGTCTACCTCGTACCCAGCAGGACTGGGAGGGCTGTACATTCGTAGAGAAGACCCACTGGGGATACTACAGCTGGCCACAGAAACTCATGATGTACTCTCCCTCTGAGGAGCAGCCCAAACAGGGACTGACCAGAGAGGAGATGACAGAGCGAGAGCAGATCATCTACGACCACTTTTCAGACCCAGTGTTCATCAACCAGCTGATTGAGTTCCTCTCTCTGGAGGACCGGAAGGGCAAGGACAAGTTCAGCCCCCGCAGGTTCTGCCTTTtcaagGGTCTGTTCCGTAACTTCAACGATGCCTTCCTGCCCGTGCTGAAACCACACATGGAGCGTCTGGTGGCCGACACACACGAGAGCAAACAGCGCTGTGTAGCAGAGATCACTTCTGGACTGATCAGAGGCAGCAAGCACTGGAGCTACGGCAAGGTTGAGAGTCTGTGGGAGCTGCTGTGTCCTCTGCTCCGTACAGCACTGAACAACATCACTGTAGAGACCTACGCTGACTGGGGCACCTGCATCGCCACCGCCTGTGAGAGCAGAGACCCCAGGAAGCTCCACTGGCTGTTTGAGATGCTGATGGAATCTCCAGTCAACGGGGAGGGGGGATCCTTCGTAGACGCCTGtcgtCTGTATGTGCTGCAGGGGGGCCTGGCTCAGCAGGAGTGGAGAGTTCCTGAGCTGCTCCACAGACTGCTGCAGTACCTAGAGCCCAAACTCACACAGGTCTACAAGAACGTCCGTGAGCGCATCGGCAGtGTACTCACCTACATCTTCATGATAGACGTCAACCTGCCGTACACTCAGCCCACAGCCTCGCCTCGCATCAAGGAGTTCACAGAGCGGGTACTGCTGCGCCTCAAACCCCTAACGGAGGGGGACGAGGAGATCCAGAACCACGTGGTAGAGGAGAACGATGTGGGGGAGCAGGACGAGAGGACACAGGCCATCAAACTACTGAAGACGGTACTCAAGTGGCTGATGGCCAGTGCCGGACGCTCCTTCTCCACGGCTGTTCCAGAGCAGCTCCAGTTGCTGCCACTGCTGTTCAAGATCGCTCCGGTGGAAAATGATGACAGTTATGATGAGCTGAAGCGGGACGCtaagacctgtctgtctctgatgtCCCAGGGACTGCTCTACACAGAGCAGATACCACTGGTCCTACTGGCCCTGCAAGAGATTGCGGGCAGCAGTTCGTGGCATGCTCGCTACACGGTTCTGACGTACCTACAGATCATGGTCTTCTACAACCTGTTCACCTTCCTGAGCGACCAGGGAGCCGTCAACGACGTCAGAGCACTGGTCATACGCCTGCTGGAGGACGAGCAGCTAGAggTGAGGGAGATGGCTGCCACCACGCTGAGCGGTTTCCTGCAGTGTAACTTCCTGTCCATAGAGGGCCCCATGCAGAGCCACTTCGAGGCCCTCTGCAAGACTCGCCTGCCCAAGAAGCGGAAGAGGGAGCTGGGCTCCGTGGTGGACACCATCCCCTCCGGAGATCTGGTGCGGCGTCATGCTGGAGTGTTAGGTCTGAGTGCCTGTATCCTGTCCAGCCCCTACGATGTTCCCACCTGGATGCCCCAACTACTGATGGACCTCAGTGCCCACCTCAATGACACACAGCCCATTGAGATGACGGTGAAGAAGACCCTGTCGAACTTTAGACGGACTCATCATGACAACTGGCAGGAGCATAAACAGCAGTTCACTGACGACCAGCTGCTGGTTCTGACCGACCTGCTGGTCTCTCCCTGCTATTACGCCTAGATACCTGGGTCCTGGTGCAACTTTCAGGAGATGTTTATGTTTTCTTAATGGAGGAACGTTATCCTCGATGGCCTCTCTGAGCCTTTTGACAATTCCTCACTCTGGCATTAGACTAGGAAGGTCTCAGACTGAACAGAACAGGCCCATATTCAAGAAGCGGTTTAGAGTAggattgctgatctaggatcatatTGAATACCATTATATGGACAGGGCGACCTGATTCTCGATCAGTACCTCTACTCTGAGACactgtgaatacaggcccagaacAGAACACACCAGCCTGCATGAGGGTAGACCAAGCCCTCACATCCAGGACCCTGCACTCTGGCCAGACCAACGGACAACatctgggtcgtattcattaggcatCAAACAGAAGACAATAGAATGAAAAACGGGGAGGAACTACCTGGGACTTGTCCATTAAGGACCGcttgttttttgtgtgtggggtggagggggggggggggtccttttttcattttttttcatgaTGGACCCTGAGGACCCTGAAAAGGGGGGACAGGGGGAACACGATTGCGTGATGATTGAATGGATGGAATAAAGGTTGTGTATTTAGCGCTGATTTACATTTTTACTATACTTAATATTTAAGGATAAACCATAGCAGGGATGATTGTCCTGCGGTTTGTAATACTACTGTACAGTTTttcttacatttttattttctttatttgcTTGCGTGTGTTTATGTGGAATGCTTGATGATACCCTACCTCTGGTCCAAGGTGTAGTGTGCGTTCCTCCACTAATGCACCACTACTTGTGGAGGAGTGCACGctacgccctggaccagagctattccctgtccccccccccccgtcctatTGCTCTCAGCACAAAATCCCCTCAATGTTATCAACTCTGAGCCAACTAACTGTATTATCCCAGTAGAGGGAAACCGTACTGTCCCAGTTCTCCTATAGTGACGTGTTCTTAGCCACAGTCTGTATGCGTTTAGATTAGATTGAgaatgtatcccaaatggtagcCTATttgtttagtgcactacttttgactacggcccatagggctctggtcaaatgtagtgcactatatagggaatagggtgccattttgggaatTAGATTTGAACCTGCCACACACATTTACGTACATGACGTTTGTGTACATTGTTTAATCTATATATGATATGTGCATATTTTATAATGTGTATATAGCATATGTATATAACATAAATGcacaaacatgtatttatttatttattggttGTTGAAGTGCTGATGTTATTATTCTTAGAGTTTTGGTTTGTGAGTAAATGGGTTGTTCAGCTTTTTAGTGACAGAGCTTTTGATTTCATCCTGCTCTCTCATTGTCAATGGTATAGATGGAGTGATTGTGTGTGTTCATTCCCCAAGGCtgtatgtgtgtgctgtgtggAGCTGATGAGCACAGTTTATCGTCATGGCGTGTGTCTAAACACCTCTCAGAACCCCAAGGGACTGGTAATTCCTTGACACAGATAATTGGAGAGTCTCCATTGAAACAAGGCTTTTCCGGGACAAAAAAGCCAaagtccaggactaggctaaATCAGTGTCCGGTAAACAGGCCCAAGGAATAACCAAACCTTCTGTCTACCACCTTAGCATCACACCCCTTCCTCTACTCTACAATACAATATTATTCtccattcttttttttaaattctagTGAGAGTTATTTTTTGTTCAATGTTTTGTTTATCCATGAAGACTTGAAAAGCTAGTCTCATTGAAGCATCGGTGCAGTTTAGTACTTCACTCATGTATAGTGTAGTGCTAAAACTgcattgatttatttttattttagatgTACTGTTTGCTTATATTTaatgaagaaaataaataaatgggttGCTTGTAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927757 lncRNA downstream 1990 31731642 ~ 31732866 (-) True G1685378
TU1927721 lncRNA downstream 9018 31724819 ~ 31725838 (-) True G1685342
TU1927749 lncRNA downstream 23547 31710691 ~ 31711309 (-) True G1685370
TU1927745 lncRNA downstream 37720 31696908 ~ 31697136 (-) True G1685366
TU1927723 lncRNA downstream 64304 31670341 ~ 31670552 (-) True G1685344
TU1928320 lncRNA upstream 76078 31882736 ~ 31883899 (-) True G1685883
TU1928465 lncRNA upstream 282165 32088823 ~ 32089175 (-) True G1686013
TU1928467 lncRNA upstream 284473 32091131 ~ 32091380 (-) True G1686015
TU1928469 lncRNA upstream 285345 32092003 ~ 32092291 (-) True G1686017
TU1928564 lncRNA upstream 451966 32258624 ~ 32262170 (-) False G1686103
XM_036956167.1 mRNA downstream 569585 30608566 ~ 31165271 (-) False LOC110498787
XM_036956193.1 mRNA upstream 336851 32143509 ~ 32225826 (-) False LOC110499330
XM_021576410.2 mRNA upstream 336851 32143509 ~ 32226222 (-) False LOC110499330
XM_036956192.1 mRNA upstream 336851 32143509 ~ 32226222 (-) True LOC110499330
XM_036956194.1 mRNA upstream 348279 32154937 ~ 32158796 (-) False LOC110499332
XR_005037979.1 mRNA upstream 348279 32154937 ~ 32158796 (-) True LOC110499332
TU1927277 other downstream 322012 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 621170 31111555 ~ 31113686 (-) True G1684661
TU1925348 other downstream 2188539 29541348 ~ 29546317 (-) False LOC110499315
TU1928979 other upstream 1005049 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 1271152 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 1727015 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 1737028 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 3452331 35258989 ~ 35259818 (-) True G1689130

Expression Profile