RNA id: XM_036956187.1


Basic Information

Item Value
RNA id XM_036956187.1
length 3333
RNA type mRNA
GC content 0.50
exon number 25
gene id wdr27
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 31822760 ~ 31978074 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGCAGGCTGTTGGTTGGTTTAGAAGGGTGTAGTGCGGAATTTGCTATATTTAGCtagagatacaattaacctgCATTTCTTTTAAGGTGGGTGACTATCTATGTTGCAGAATATAGCTAACGTCAGTTTGCAGGACATGTGCTCTGTAACCCATCTAGTTAGTTGGCTAACTTTAGCTTGCTGGGTAATCCTTACCACAGACCACATATAGCTCTTAGCTATTACCTACTGGAAAGACTGTCGCTGTTTTCAGAGTAACTACATAGCTAGAAACTATCACCATGGATGGTTGTGGGGAAGGCAGCAGGACCAACAGACTGATGGTGGAAAAGCTATCCTTGTCCTGTGATAGACTGCTATCTCACCTACAGCTGGCCTGCTGTCCCTCTCACTGTGCCTCACCACTACAAGGCAAGGACCTGTTGATACACTGTCTCCTGGACACAGAGCTGAAGGCCCTGCGACTGACAGGTCACCATGGAGACATCTCTGCCATGGTGTTTGGGACAGGTAGAGACCctctcctgctctgctctgcctctgCAGATTATGTCATAGTCTGGGACATCCGGCGCTGCTACAGGAGAACTAGGGAGGGGGTAGTTGCGTCTGGTACAGTTATTGGGACACTACTGGGCAAGGTAGTCCATCTGTCATTTTGTCCCTGTGATGAGCGAGTGGCTGCATGCTCAGGGGCGAAAGTATACATACTCAACTCCAATATAGAGGAAGTGTTGTCTGTGCTGGCTGGCCACCTGGGACCTTTGACAGCAGCTGAGTTCTGTCCATGGGACAAAGACATCCTGGTGTCCATATCAGAAGACCGCACGTTTAAGGTTTGGGGATTAAAAATGGAACAGATTCTCTATCAGTCTGCTGTGTTGTCAGcatctccactaCTCAGTATGTTGTTCTTGGAGAAGAGCAGGCAGCTTGTCACTGGTTCTGCTGATGGACAGGTGTGGAGCTTCACTCTTCCTGAGGACCACAGATGTCATTTGGTGACCAAATTGGACCTTCACAAGGTGCAGCAACGACACCAAAGACACCTGGACACAGTGGTCCCACAGACTGGTGGTGTACTAGGAATCACTCCAGACTCAGTGGAGACGGCAAAGCCAGTCCTCAGACTTTGTGCTTATCACAGGCTACCTGACATTGATCATGGGCAGCAGAGCTGGGTGTGGATGGGAAGCTCTGATGGCCTCTACCTGGTTGACCTGGGCACCTCTGAGCTCCACATGACACTACTTTTCAGAGACTACCCCAACTTGAGCATCACCATGGCTGGATCATGGGCCATGTCCCAAGGACTGGATAACAGTaTGATCTTTGTGGTGACCTCTCTATTTGAGGCCCTGGTGTCTGTATTGGAGGTGAGACTGCTGGGGTCAGGGTCCGTGGACAACCTCTGCCAGCACCTGGAGAGGCTCTCCGTCATGCCCAGTGCCCCTCTGATGCCTGAATCTCCTCTCAACGCTGagttgaaaaagaagggtcctAAACCTCCCACAAAAACAGGGAAACGTGGTGTGAAGGAGCAGCCTCTAGTTTTCCACACACAGGTCAAGTCATCAGGATACACACAATGTCCCCGAATGACAATGTTCTCACCCAAGACCAATGTTCAGAAGAAGACCCCAGGACCTACAAAGACCAACAAGAAGATAGGATGTCTCGTTAGTGAATACCCAGGAGACACTGCAGCACCCAGTGTCCCACACACTAACCTCAGCACAGTCAAAACCCCTACACCAGTTTGCTGTACCCAATACTCAGGAGATGGAAAGCAGATTCTGTGTGGTCTGGGAGACAGATCTGTATTGTTGTACAAGTCCTCCCTCACTGGCACTCCAGCTGTTTACACAGGTCATGACAAGGCAGTGAGCAGTGTGGCCTGGAGTCACAGCAGACAGTGGTGGCTGAGTGCCTCAGAAGACAGGACCCTCCGCATCTGGCCCACTGGAAGTCCTGAGCCTGCCGTTACCATGGGGGGTGATGAGAAGTTCTCCAAAACCATCCGGGGGGCTCAGTTCTACTACCTGGATAAGTTCCTGTTACTGGCATCTGGTCCCTCCCTACACCTCTACCTGTATCACCTGGACAACACACAGGACGACATTAAAAGGTACCAGCAGAGGAGTGCCATCAAACTGACAAGATGTTTAGAGACTAAGTCAGGAACAGACATCACTGCTGTGTCAGTCATCAACGACTTCTACTCCTACATAGTGCTGGTGAGTGGTGCTGACCGCTCCATCCAGGTGTTGGACATGAACACAGGGACAGTGGCCTCACAGCTCCCTGATGCCCACAGCAGAGCTGTCCATCACATCACACAGAACAAGGGCTCTATGTTCAGTAGCCAGACTCCAGACTCCTACAACCTCTTCCTGACCAGCGCAGTGACCGACGGAGTTAAACTGTGGGACCTGAGGACACTCAGGTGTGTGCGGCGGTATGAGAACCACTTGAATCGCTGTCATCCCTGCACCGCAGCCTTTTCACCCTGTGGACGATTCATTGCTTCTGGCTCTGAAGACAACTGTGCCTATGTGTATGACATCCGCAGCAGCAGCTACCTCCACAAGCTACAGAGACACTCCGACACCATCCTCAATGTGACCTTTAACCCTGCTACACCTGAGCTGCTGACCGGGACTCTGGACGGGAGGCTGAGTCTGTTCCGCCCTGGCAACGCCGCCATCAGGGTCACCCTGTCATGACAACCGGCTGGATCCCATTACAGGAGGCAAGCGCATTCAAACATTTGAAAGAAAGCAAATGCTatatgaacccaggtctggaccTGACAATGACGCTTGTGTTATTTACACCATACTGTAATGGGGACCAACGGGCCTCGTTAGCTAGAGAGCTTCCTTTTATCCCATTGGCTGTGATCTCACAGTGAGGCTTTACAGAGGGATGGATGCCAGGGCCTGGAGAGTTACAGCAGCATTACTGAGACCCAGGGGCTACAGTGACATCACCATCTGACTGCACCGCTCAGCAGCCTGCGAGTCTGACACGCAGACGTTACTACATACTAAAACACCCATCCACATGTACAGATGTATTTACATTAGaatggagacacacacagacctagaCAGAAAGAAAAGACTGGTATGTTCAGTACAGAACTATATATCACCTATATCCCAACAGTACAGTAGGTGAAATGTGAATATTCAAGATTAAACTGATTTGAATGCATACAGAATGCTTAACTGTTTTTGTGCTTCTTACTGTCCTTCTCCGTTCCACACTTCCATAGTTCTGGCAATTAGGCCTACTGCTCAGATAACatatttatccccccccccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927667 lncRNA upstream 84278 31736313 ~ 31738506 (+) False G1685291
TU1927668 lncRNA upstream 84278 31736313 ~ 31738506 (+) True G1685291
TU1927664 lncRNA upstream 86564 31734869 ~ 31736220 (+) False G1685291
TU1927653 lncRNA upstream 113223 31709330 ~ 31709561 (+) True G1685282
TU1927652 lncRNA upstream 113622 31708945 ~ 31709162 (+) True G1685281
TU1927916 lncRNA downstream 36521 32014595 ~ 32015103 (+) True G1685533
TU1927934 lncRNA downstream 70297 32048371 ~ 32054955 (+) True G1685550
TU1927935 lncRNA downstream 110843 32088917 ~ 32089177 (+) True G1685551
TU1927956 lncRNA downstream 115575 32093649 ~ 32093976 (+) True G1685572
TU1927968 lncRNA downstream 131448 32109522 ~ 32109737 (+) True G1685584
XM_036956183.1 mRNA upstream 96906 31713706 ~ 31725878 (+) False erlec1
XM_036956184.1 mRNA upstream 96906 31713706 ~ 31725878 (+) True erlec1
XR_005037978.1 mRNA upstream 311607 31495094 ~ 31511177 (+) True LOC110499596
XM_036955550.1 mRNA upstream 381788 31440277 ~ 31440996 (+) True LOC118942000
XM_036956153.1 mRNA upstream 1581318 30219786 ~ 30241466 (+) True LOC110499324
XM_036956189.1 mRNA downstream 56125 32034199 ~ 32073088 (+) False thbs2a
XM_036956190.1 mRNA downstream 56126 32034200 ~ 32073088 (+) False thbs2a
XM_036956191.1 mRNA downstream 56218 32034292 ~ 32073088 (+) True thbs2a
XM_021576412.2 mRNA downstream 145912 32123986 ~ 32143464 (+) False agpat4
XM_021576413.2 mRNA downstream 145912 32123986 ~ 32143464 (+) False agpat4
TU1924589 other upstream 2246226 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2246226 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2364863 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3044375 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3096289 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 676280 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1199219 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2347763 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3403635 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3403635 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile