RNA id: XM_036956189.1


Basic Information

Item Value
RNA id XM_036956189.1
length 4785
RNA type mRNA
GC content 0.49
exon number 24
gene id thbs2a
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32034199 ~ 32073088 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGCTAATGAAGTGGGCTTGATAGAGAAGTGGGATTGGGGCacgagagagcgcgagggagggGGTCACGGGTGGATGGTAACTGCCGCTCTAACAGGGGGATTTGCACTTTCACCAGGAGATATGATACTCAGGAGAAGTCTCAACTTGCTGCCTATTTTATTACTTTGCTCCTCAGCGCTACCTCAAGATGGTGAGGTCACAATGGATGACGACACAACGTTTGACCTGTTTGATATTAGCGGTATCACACGCAAGACTCTGGGCGCCAAGCAATTCCGTGGCCAAGACACGGACAACCCCGCTTACCGCTTCATCCGCTTTGACCATTTGCCCTCTGTGAGCGCGCCCGTGCTCAAACAGATGCTTCTGCAAATCCAGAACAACGAGGGCTTCGTGTTCGTGGCCAGCATGCGTCAGGACCGCGGCTCGCGGGGAACCCTCATCGCATTGGAAGGCGCCAACGGCCAACGGCAGTTTGAAATCGTCTCCAACGGTCGTGCCAACACGCTGGACCTTGTCTACTGGGTGGACGGCTCTCAAAATGTTGTCTCCTTCGAGGATGTTGACCTGTCTGACTCGCAGTGGAAGAATATCACACTTCATGTTCATGGCGAAAATGCAAATCTGTTTGTGGGCTGCAGTCTCATCGACAGCTTCATCTTGGATGAGCCTTTCTACGAGCACCTGCAGGCAGAGGATAGCCGAATGTTCGTCGCCAAGGGATCCATCCGCGAAAACCATTTCAGGGGCTTACTGCAGAATGTTCGCTTCATGTTCGACACATCCGTGGATGATGTTCTGAGGAACAAAGGCTGTGAAGTCACTAAGGCTGACGAGGCCAACGTGGTGGTGAGTGAGAGCACAGATATGGAGGATGTGAGTACCTCCACAGCCATCACCACTAACTTCATCGGCCAAAAGACAGAGAAGCTGGGAGCAGATATGTGTGAACGATCCTGTGAGGAACTCAGCACCATGTTCCAGGAGCTCAAAGGACTGCGGGTTGTAGTGGGGAACCTCATAGACGGCCTGCAGAAAGTGACAGAGGAGAACACCGTAATGAAGGATGCTTTGGGGAAGATGAAGAACTCCAAGGAGAAACACATGTGTTGGCAGGACGGACGGCTGTTTGAAGATAAGGAGGACTGGGTGGTGGACAGCTGCACCACGTGTACCTGCCAGGACTCAAAGATCGTGTGTCACCAAATCACTTGTCCTCCTGTGGCCTGTGCTAGCCCCTCCTTCATCGACGGAGAGTGttgccctgtgtgtctgtCTAAGGACAGTGAGGACGGCTGGTCCCCCTGGTCGGAGTGGACAGAGTGTACtgtcacctgtgggacaggtactcAACAGAGGGGACGCTCATGTGATGCCACCAGTAACACCTGTTCCGGACCATCCATCCAGACCAGGAAATGCAGCCTGGGAAAATGTGACAGCCGAGTTCGTCAGAATGGTGGGTGGAGCCTGTGGTCTCCCTGGTCATCATGCTCAGTGACGTGTGGCGAGGGCCAGATCACCAGGATACGCCACTGCAACGCACCCACACCACAACTGGGGGGCAAGGACTGTGAGGGCCAGGGGAGAGATACACAGCGCTGTGAGGCCAAGCCCTGTCCCATTGACGGTGGTTGGGGACCGTGGTCGCCTTGGGCGATCTGCTCGGCAACCTGTGGGGGTGGAGTTAAGGGTCGGACCCGTGTCTGTAACAGCCCCGAACCCCAGTACGGAGGCAAGAAGTGCCCTGGGGAGACCAACGACAGTGATGCCTGCAACAAACAAGAATGCCCTatcgACGGTTGTCTGTCTAACCCATGCTTCGGAGGAGTGGACTGTAACAGTGCCCCCGACGGATCCTGGGAGTGTGGGCCATGCCCTCTCGGTTTCCGCGGCAACGGAACCCACTGCGAAGACGTCAACGAGtgtGACATGGTGTCTGACATATGCTTTAAAGCTGGTGGAGCATCGCGTTGCATCAACACAGACCCAGGGTTCCACTGTCTGTCCTGCCCACCCCGCTACAAGGGAACGCAGCCCTTCGGCATGGGGGTGGAAGCTGCCAAGAAGAACAAACAGgtCTGCGAGCCAGAGAACCCCTGCAAAGACAAGACCCACAACTGTCACCGGTCCTCAGAGTGTATCTACATCAGCCACTTTAGTGAACCCATGTACAAGTGTGAGTGCAGGATCGGCTACGCTGGTGATGGCTTCATCTGTGGAGAGGACTCAGACCTGGATGGATGGCCTAATCAGAACTTGGTGTGTGGGGCCAACGCCACCTATCACTGCAAAAAGGATAACTGCCCCAACCTGCCTAACTCTGGACAGGAAGATTTTGACAAAGATGGTCAGGGAGACGCTTGTGACCAGGATGATGACAACGATGGAATCGTGGATGAAAGAgacaACTGTCCTCTAATGTACAACCCCAGACAGTTTGACTTTGATAAGGATGATGTGGGGGATCGTTGTGACAACTGCCCCTACGAACACAACCCTGCCCAGATCGACACAGACCACAATGGGGAAGGTGACGCCTGTGCTATCGACATTGATGGAGATGAAATCCTAAACGAGCAAGACAACTGCCCGTACTTGTACAACAATGACCAGAAGGACACTGACATGGATGGAGTCGGTGACCAGTGTGACAACTGTCCTCTGCTACACAACCCTGACCAGGCTGACACAGACAATGACCTTGTAGGAGACCAGTGTGACAACAACCAGGATATCGATGAAGACGGTCACCAGAATAACCTGGACAACTGTCCTTACGTCGCCAACTCCAACCAGGCCGACCACGATAAGGACGGCAAGGGGGACGCCTGTGACTTCGACGATGACAATGACGGTATCCCTGACGATAGGGACAACTGTAGATTGACACCCAACAAAGATCAACTGGACTCTGATGGCGACGGTAGAGGAGACGCCTGCAAAGACGACTTTGACAACGACAACATCCCGGACTTCCTTGACGTGTGTCCTGAGAACAATGCCGTCAGCGTCACAAACTTCCGGAAGTTTCAGATGGTGCACCTGGACCCCAAGGGAACAGCGCAGATCGACCCCAACTGGGTGGTTAGACATCAAGGCAAGGAGCTGGTACAGACCGTCAACTCTGACCCTGGCATCGCTGTTGGCTTTGATGAGTTCAACGCGGTGGACTTCAGTGGTACGTTCTACGTGAACACGGACCGGGATGATGACTATGCTGGCTTTGTGTTCGGTTACCAGTCGAGCGGCCGCTTCTACGTGGTGATGTGGAAGCAGATCACTCAGACCTACTGGGAAGACAAACCCTCCAAGGCCTTTGGTATCTCTGGTGTCTCTCTCAAGGTGGTCAACTCAACTACGGGCACAGGGGAGAACCTGAGAAACGCCCTGTGGCACACAGGCAACACAAAAAATCAGGTGCGCACTCTGTGGCACGACCCAAAGAACATTGGCTGGAAGGATTACACAGCCTACAGGTGGCACCTCATCCACAGACCCAAGACTGGATTCATCAGGGTTGTGGTCTATGAAGGGAAACAGATCTTGGCAGACTCAGGACCAGTGTACGACAAGACGTTTGCTGGAGGACGGTTAGGCCTGTTTGTCTTCTCCCAGGAACTGGTCTTCTTCTCTGATCTCAAATATGAGTGTAGAGATAAGCTGGAGTTTCCAACTGTGTTGTCCATCAGATAACTGAACAGCGTTGGATGTGAAAACTTCAAATGGCTAAAGACACTAAACCTCATAACCTGATCATCAGCCTTTTGCTGATTCGTTCGTCATTTCAACCAATGAAATGGAGCTTCAGCTTCGCCCCACCAAAGTATTTTTGCCTCTAACTTTCCATTGAAGAGGCAGCCGAGGCCTTTTCCAGTTTTTCTGAGTGCCTTATGTGAAAAGACATATCCTTGAGAAATGAAAACCGATGACAAATGAAAAAGGCCTTGTGGACAAATGAAAAAGGTCTTAGCAATGATAAAAACTAAGTAACCGATGTTGACAACATATTATAGGGATTATTTGTACAACCACTTATGTGCTTTACTCCGATTTCTTCCAAACTTTTTACAGCTTTACATTAACAAAAGAAAATATAAAACTATTGTTACTCGATAAATATTGATATTGTTTGTGCTGGAAAAGAGATCAACTTGATGCTAAGTACAATGTACAATAAAGGCGTCTAGGTTGCTTAGCAACTAAAGGTTTCTGTATTGACCTCAGCAGTTTCAGCCCTGCAGTGAAAAATTGGATCAATTTTAATATTTACTGCCAAATATCCACCAAACTCTTAATCAATACCAAAGCACACTGATGTACTTCGCTAACTTGAACAAAGTTCTTATTTTTTGTATTGATTCTTATACCACCCAGAATGCAGTTTTGTTAAAACGGTCTTCAGTTGCTCATTTAAAATGTTTGTCAAACTCTAAAAAGGTTGACCGTGAGACCGTCTTATAGCATTTTAAAGTACTTTGGGATGAAGATGTTTATACTAAGTTTGTATTATAATTTCTTCTGTAAATTATTATCACGAGTTTATGTCTTGctggtttgtttgttttgtttgtttgcttttttGTTAGAGATtgtaaataatttatttatttgtttacacTGACGAAATTTCACAATTGAAGATTGTTGGATATCAACATAAAAATTTCTCAAACATCAAGTTAAAAATACACTATCACAAACTTTGTGTACTATGCAGTGTTATGCCATgtgttatactgaacaaaaatttaaataataaaacaacatgcaacaatttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927916 lncRNA upstream 19096 32014595 ~ 32015103 (+) True G1685533
TU1927799 lncRNA upstream 56266 31923959 ~ 31977933 (+) True wdr27
TU1927857 lncRNA upstream 111578 31922266 ~ 31922621 (+) True G1685476
TU1927854 lncRNA upstream 117969 31914096 ~ 31916230 (+) True G1685473
TU1927667 lncRNA upstream 295693 31736313 ~ 31738506 (+) False G1685291
TU1927935 lncRNA downstream 15829 32088917 ~ 32089177 (+) True G1685551
TU1927956 lncRNA downstream 20561 32093649 ~ 32093976 (+) True G1685572
TU1927968 lncRNA downstream 36434 32109522 ~ 32109737 (+) True G1685584
TU1927984 lncRNA downstream 68565 32141653 ~ 32144750 (+) True agpat4
TU1928023 lncRNA downstream 103685 32176773 ~ 32177222 (+) True G1685630
XM_036956188.1 mRNA upstream 56125 31822760 ~ 31978074 (+) False wdr27
XM_036956187.1 mRNA upstream 56125 31822784 ~ 31978074 (+) False wdr27
XM_036956183.1 mRNA upstream 308321 31713706 ~ 31725878 (+) False erlec1
XM_036956184.1 mRNA upstream 308321 31713706 ~ 31725878 (+) True erlec1
XR_005037978.1 mRNA upstream 523022 31495094 ~ 31511177 (+) True LOC110499596
XM_021576412.2 mRNA downstream 50898 32123986 ~ 32143464 (+) False agpat4
XM_021576413.2 mRNA downstream 50898 32123986 ~ 32143464 (+) False agpat4
XM_021576414.2 mRNA downstream 50921 32124009 ~ 32143464 (+) False agpat4
XM_021576416.2 mRNA downstream 172815 32245903 ~ 32262177 (+) True kcnk1b
XM_036956195.1 mRNA downstream 218177 32291265 ~ 32476165 (+) True LOC110499334
TU1924589 other upstream 2457641 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2457641 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2576278 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3255790 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3307704 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 581266 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1104205 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2252749 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3308621 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3308621 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile