RNA id: TU1927984


Basic Information

Item Value
RNA id TU1927984
length 2543
lncRNA type read_through
GC content 0.42
exon number 2
gene id agpat4
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32123986 ~ 32144750 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGCAGCCTGCTCTTTGGAGGACAGCAAGCACCAAGGACAAAGCTGAAACTCTCACTTACAATATCTTAATGTCAGTACCTACTCTTCACCCTTACGTTGTTGTTCTGTCCCCAATGTTTAATTCACAAACATTGCACCACACACTTTCATCAATCACTTGCACAATCTGACCCGTTTGTACAGTAACTGATGTAAAATTGCCCTGGTTAGATGAAATTAGATTAGATAGTACTTCATAATACTTAATTGCACTGTTAGAGATCCACtacaaaaatacatatatatatatatatatatatatacacacacaagatCAGAGACCTACAGTTCATAAAACACACCCCTCCCGTGGCACTTTTTTTTATGGTCATGGCTGTGAAGCCAGTTGTCTATGCTCCTGTTTGTAAGATAATTGATGTGGTCATGTATTGTTATTCCAGGACAAGTTCCAGGAGGACTACAGCCAGACAGGGTGTTTCCCAGGCCCCAAAGTTACCCCACCATGCAGGCCCTGGGCCCTGATCAACTGGCTGGGCTGGACCTGCCTTCTCCTATACCCCCTCTGCCTCCTCCTGGTTCAGCTGGTCAACTCTGGGTCTCTTCTCACCATCATGGCCACAGTGGCTTTCTGCGCTGCAGTGTCATTTGGTGTGCGCTGGATGATTGGACAGACGGAGATTAAGAGAAGCTCCAGCTACGGGGTCCCACTGAACAACAAATGAGGGGATGACCTTTTTAAAACTTCAATTTACAATTGCAAGATTTCTTGCCAGCACCAGAGCGTCACTCACATTACTAATCTGAGAACTACAGCACAGTTCACCTCAAACAGTTAAGAATTCATCCCAAGAAATACTTGGTGACTCGTCAGGGAAAGCATTCAAGTCAATTCAAGCTGGACGGTTGACTGGTGCCGAAGTCTTTTGAGGACACACCTGTCTGCTAATGGCAGTCTCCTGTGGCCGTCTTCATCTCGTCGATACATGGGAATGTACTGAACCTATACAAAGCACAGATACGTCCAGGGCATGCATCCAGCATCTTTGTTGTTCAAGATGACTAAAATTGGCACTGTTGTGACTTTGTTAAAAGCACTTTTATTAGTTGTCATTTGATATGAATGGACTCAATTGACAATGTTTATTTGCAATAAAATAAAGACCAAAGAACGAAAGCTGTAAAACGCACCAGAGACCACTTTAGATTGATGCAGTGTATGTGCAATCCATTCTATTATAAAGATCCTGTTATCATTACAATGCCATGTTTGATTAATCTAACCTTAGGTCATGACACACCATTTATTAAAAAAAGATTTAttaatattgtttgtacatagCAAACACAAAGAGCAGCAGAGGACCAGAATGTATGTGTGTTCTCAGCAGCAGGGAGTGAGCACGCAACTTTGTCTTCTCTCATTGGTTGGATATGCGCCAGCTGTCCAGTCAGGGCACACCTGTCTAACTGACCATCAATCCATGCCTGAAGCCTATAGAATCCCGCCCACATCCCTGcacccaaatggcacactattccctatatagtgcactactactgaccaggaccataagtgcactatagtgaatagggtgccatttgggacgcactatAGGCTTAAGCCCCACATTACCATTGGAATCCTCTCCTTagcaagaaaaaaatatatattttaaaataaaatgtttctttccttcCTGGGCTCTCTACAGCCTTTGAGTGTTAATTTGCATGGTAATAGTTTCTTACAGTTGCAGCATCCCCTGCTTCTGTGCAATGAAGCTCACCTCAAACAAGGAAAGGAAAGACAATATCTGCCTCGACCAAACCTGGGGCAAATTCAGAAGGGCACAACattgtagaacaaacatgcctcgaCATTTCTAGCTGCAATGTTCCACAACATGTCTACTGAACGAGACCCAGATATCTGAATTCCTCCCCTTAACTGTCCCTACTTGTCCCCTAGTACTCACTGAAAGGGGAACAGTAAAAAAAAGTGACATAGCTTTATTTCCCCCCATTTCTTTAAAATGTCTTCATTTGCCTTTTTATTCAGGTCTTCTATCTTATCTTCACCAGTGAGAGAACAACAAGATGTGGCTATATTTATTACTCAAGCTTTACAATATTGTTTATACAAGGAAGGATCCAATGAACCAATCCTATTATTATAGTATGTACAATGCAATACATTCCCCGCTATCCCCTTCCAGAAAATGCAAGACCTGTCACTCGActacagggtcatgttcattaggacaCAACGTAGCCAAAACAATTTCAAAGACAAAACTAAAACAAGCTGTTCTAATTGAACACGACCCAGGTGATCCATCGGAAATGATGTCATAAGAGTTCCTCAGTTTAGCTCCATGTGCCTGCAGTTATCATTTTCTGTTTCCTATGTTCACAAGCCCCTCTTCTTGTGTCCAAAGCCCCTCTATCTGGCTGTGTCCAGTCTCTGGCCAACATGTACAGTAGTGCTATAGTTTGTAAACGTGACAGCCACAGGGTCCGTTCCCCCTCACTCACTCTTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1927968 lncRNA upstream 31916 32109522 ~ 32109737 (+) True G1685584
TU1927956 lncRNA upstream 47677 32093649 ~ 32093976 (+) True G1685572
TU1927935 lncRNA upstream 52476 32088917 ~ 32089177 (+) True G1685551
TU1927934 lncRNA upstream 86698 32048371 ~ 32054955 (+) True G1685550
TU1927916 lncRNA upstream 126550 32014595 ~ 32015103 (+) True G1685533
TU1928023 lncRNA downstream 32023 32176773 ~ 32177222 (+) True G1685630
TU1928076 lncRNA downstream 93614 32238364 ~ 32241206 (+) True G1685680
TU1928224 lncRNA downstream 335520 32480270 ~ 32480604 (+) True G1685791
TU1928227 lncRNA downstream 338111 32482861 ~ 32483070 (+) True G1685794
TU1928231 lncRNA downstream 342165 32486915 ~ 32487149 (+) True G1685798
XM_036956189.1 mRNA upstream 68565 32034199 ~ 32073088 (+) False thbs2a
XM_036956190.1 mRNA upstream 68565 32034200 ~ 32073088 (+) False thbs2a
XM_036956191.1 mRNA upstream 68565 32034292 ~ 32073088 (+) True thbs2a
XM_036956188.1 mRNA upstream 163579 31822760 ~ 31978074 (+) False wdr27
XM_021576416.2 mRNA downstream 101153 32245903 ~ 32262177 (+) True kcnk1b
XM_036956195.1 mRNA downstream 146515 32291265 ~ 32476165 (+) True LOC110499334
LOC110499531 mRNA downstream 468208 32612958 ~ 32613933 (+) True LOC110499531
XM_021576423.2 mRNA downstream 545337 32690087 ~ 32702525 (+) True LOC110499339
XM_036956202.1 mRNA downstream 558041 32702791 ~ 32736730 (+) False LOC110499338
TU1924589 other upstream 2565095 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2565095 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2683732 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3363244 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3415158 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 509604 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 1032543 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 2181087 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 3236959 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 3236959 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile