RNA id: XM_021576410.2


Basic Information

Item Value
RNA id XM_021576410.2
length 6644
RNA type mRNA
GC content 0.54
exon number 28
gene id LOC110499330
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32143509 ~ 32226222 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATGTGTGACTTGACTGCTGAACGGATGAACTGTACGGGTTGCCGTAGCACTCCTCCTGACTGCTGGAAAGATGGCGGCAGCGCACACCCGGGCGAGCCCCAATTCTGCAGGCGAAAAAAAATCTTAACAGAAAGACACCTTTCGCCCAGCTTTTGCAAAAGGAAAACGTGCAAACAACTATTAAACTTGCATGGTCATGGGTGGTCCCATGCACCACTAGAACCGAGCATTCCCCGACCTGCTATGGAGCCTCCGGATAATAGCGAACCTAGCAGGCAGGTCAATCCCTCAAAAGATGGTTCGGCGCATCAGAGCTGCGAGGTGGAAGACTTTTGGTACGAGCCCAGCGAGGAAGAGGAAGCTCTGTACGGCACATCACCCCCCTACACCTCCCGGCAGATGAAACGCATGTCGGGGAAACACCAGAAGAACAGCCAGGCCAGGTCGGCTGGACGCTCCCCCGTCGGACACTCTCCTAACAAGATAGACAATCAGCCAGCCCCCTCCAGTCCATCCCAgccccagagagagagtgagcctAACCCCTACAGGCCTAGAGAGGGGGCTGAGCGAGACCGAGAGAAGGACCCCCCAGAGGCTGAGCAACATAACTACAAGTTGAGTAAGAAACAGACCGACCCTTCTGAGGGGATCCAAATAAACGTAAACAAAGCAACCGAGGAGCACCAACACAACTATAAGCAGGGTAAAAGACAACGCACCACCCTGCGTTCCAGCGAGAGAGACCACAAGAAGACCTTTGAAGGTTCCTTCATGCTGGACCCGCTCTCCAAGACCTCCAGCCCCTTTGGTGGAGGCTCAGCCCTGAACATGGACCCCAGGAAACCCTACCTATCGCTGGGGTGTGGCAGCAGCAAGCTCCCTGtcactatcccccaccccatggCCCACCGCACCCACCGCCAGACCTCAAGGACAGACTGCCCTGCAGATAGACTCAAGTTCTTTGAGACGCTGAGGTTGTTATTGAAGCTGACTTCCATGTCGtccaagaagaaggagaaggagcagCGAGGTCTGGAGAACTCCGCTTTCATGGGCCAGAACAACGAGgtgGTGTGGCTGGAGCTCCAGGCGTGGCACGCGAGACGCTCCGTCAACGACCAGGATCTGTTCCTGTTCACGGCTCGACAAGCAATCCCAGACATCATCAACAAGGTGCTCCACTTTAAGGTCAATTACCACAGCCTGAGCCCCAGCACCGTGGGCCTGGGACAACTGACCCTGGGGGTGTGTGTAGGACGACCAGGTATGGTTGGATCAGGGGCATCTCCCGGCCAGGGAGCCCAGAGGACACTAGTGTTAACAGAGCCTTGCTGTGGAGGCCCAGACCAGGGTCCCAAACAGAGGTCTCCAACCCAGGCCTCAGAGACTGTTTCTGGGGAGGAGAGGGATTTTAACCAGCCTGCTGCTGTTGGAGCCCCAGAGACGAACCAAAATCACTTTGCTTCAGTTGACCCATGGGGCTTCAGCGCCTGCCCCTCCTCGGCAGTAGACGCAGCGGCGCCCCTGGGCTCCGGGGCGGGGTGCAGGGAGCACCTCCAGCGCCAGCGGCTGGCCTTCGAGCAGGTCAAACGGGTGATGGAGCTGCTGGAGTCAGTAGAGGCTTTGTACCCGTCACTGCAGACCCTCCAGAAGGACTATGAGAAGTACGCGGCCAGGGACTTCCAGGGCAGGGTGCAGGCACTCTGTCTCTGGCTCAACATCACACAGGATCTGAACCAGAAACTTCGTGTTATGGCGACTGTCCTCGGCCTCAGGGACCTTTCCCGTATCGGCTGGCCCGTCTTCGAGATCCCCTCGCCACGCTGTTCCCGTGGCAACGACGAGGAAGACGAGGATGAAGAAGACGAGGAGAATGACTCCACGGCAACCTTCACTGCCGGTGACAGCGACGGAGAGGACAGGGACCtagtgggggaggagggggaatcTGGTGAGCCCAGAGGGGGTGAAACAACAACTGAGCCGGGAGAAGATGAACTCTCCCCCTGTTTGACTCCTAAATTTGCCCAGTTACTACTATCTGAGGATGGGACAGGGACTATGGAGGTGGTATCGGAGGGCACAGGGACAGGAGGGATGAACTGCCCTACAGCCATCTTCAGACCATTCGTAGATAAGGCCTTGAAACAGATGGGTCTGAGGAAACTGATTCTGAGACTACACAAGCTGATGGACCCCTCCCTCCAGAGGTCCCGGGCAGCCCTGCTCAGCCACACACCTGCACAGGAGTTCACGGACTTCCCAGACCCCATGCTGTACAGTGACTACCTACCGGAGCTGTCCCGCCACCTGTCCTCCTGCAGCACTCCCGGGGGCCCAGAGCTGGGGGCGGACCAAGTTTCCTGGGAGGAGCTGTTGGACATGGATCTGCCCTCATTCCGACCTGCCTTCCTGGTCCTGTGCCGCGTCCTGCTGAACGTGATACACGAGTGCCTTAAGCTGAGACTGGAACAGAGGCCTGCAGGGGAGCCATCACTGCTCAGCATCAAACAGTTGGTGCGTGAATGTAAGGAGGTGTTGAAAGGTGGTCTCCTGATGAAGCAGTATTACCAGTACATGCTGAGGGGGGTGGTCACAGACCCCCAGGGACTCCAGACCAATGCCAACATAGACGAATTCGAGGAGGACCTCCACAAAATGCTGGTGgtGTACTTTGACTACATGCACAGCTGGATCCAGATGCTGCAGCAGCTTCCCCAGGCCTCACACAGCCTGAAGAACCTTCTAGAGGAGGAGTGGAACTTCTCCAAGGTCATCACTCCCTACATCAGACGAGGGGAGGCTCAGTCTGGGAAACTCTTCTGtGACATTGCTGGGATGCTACTCAAGTCCACAGGGGACTTCCTGGACACGGGCCTGCAGAAGAGTGGGGATGAATTCTGGGAAAGTGCCGACGACAGTACAGTCTCAGATGAGATCCGCCGTTCGGTAATTGAGACGAGCCGGTCACTTAAGGAGCTGTTCCACGAGGCTAGAGAGAGGGCATCCAAAGCTCTGGGATTTGCCAAAATGCTCCGTAAGgaCCTGGAGATTGCTGCTGATTTCAGCATTACCAGTGGGGTGCCATGCCTCCTGGAGGCTCTCAAGGAGAGAAATTATGTCAAGgtCCAGATCCCAGGGCTGGAGGAGCTGGAGGTGTTTGTCCCATGTGCCTTGATGCACCAGCGTGACCTCATCCTGCAGCTTCTAAACGCAGCAGCCGGTAAGGATTGCAGTAAGGAGCCCGACGAGATGATGGCAGAGGACGAGGCCTACCTGCTGATGAGCAAGCATGGAGCAGGGGACCCGCCTGGGGGGGCAGGCCAGGCCGGGGTTCAGTGGCACTGGGATGGGAAGCTGGTCAAACTGGTGCCTCAGATGGAGACTGTGGACACACTACGGGCCATGAAGgtGGAGAACCTGCTCCTGATAGTGATGCAGTCAGCCCACCTTGTGGCCCAGCGTAAGGCCTTCCAGCAAAGTATGGACGAGCTGCTCACCCTAAGCAGGGAGCAAACCTCCAGCCAGCCCCTCATCGCCCGCTCCCTGGAGCAACTCAAGaACGAAGCCTTACAGCTCTGTAGAAAGATCAACACGGCCATTGACCGGGTGGAGTTCATGTTCACGTCAGAGTTTGAGGCCGAGGTGGAGGAATCTGAGTCAGCCACGCTGCAGCAGTACTACAGAGAGGCCATGATCCAGGGATACAACTTCGCCTTCGAGTACCACAAGGAGGTGGTGCGTCTGATGTCGGGGGAGTTCCGTCAGCGGATTGGGGAATGCTATATCGCCTTCGCCAGGAAGTGGATGAATTACGTCCTCACCAAGTGTGAAAGTGGCCGGGGAACCAGACCccgctgggccactcaaggcttTGATTTCCTCCAAGCCATTGAACCTGCCTTCATCTCTGCTTTACCAGAGGACGACTTCCTGAATTTGCAAGCTCTGATGAATGAGTGCATTGGTCATGTGATCGGGAAGCCTCACAGCCCAGTCAGTGGCTTGTACCTAGCCCCCAGGAACAGTCCTCGACCAGTGAAGGTCCCTCGTTGCCATAGCGACCCCCCCAACCCCCACCTGTTCATCCCCAATGCAGAGGGCTTCAGCTCTAGGAGTCTCCCCTGCGACCTACGGACCCAGCTGTGTCTACCTACCGGCCCCCGCCCAGTCCCCGCCCCTCAGGCCCCAGGCCCTGCCCCCGGGGAACACTGCCCATCCAAAGCACCTGGGTCCACCCCCAATGACGTCAGAGGGGCCAACCTCCACGAGAACGACAGGCTGTCGTCTGTAGCGGCCGAGCTGCAGTTCAAGTCTCTGAGCCGACACTCCAGTCCCACTGATGACAGGGAAGAACCCTCCTATCCTAAGGGAGGAGACCCCAGCAGCACGGCCAGGAGAAGCTGGGAGCTCCGCACCTTCATCAGTCAATCAAAAGACACGGCAGCCAGGCAGAGTCCCATGGAAGCTGTACGTCGCTCCATACGCTCCTTCGAGGACAACCGCTACGCAGTCATGAAGCAGAGGAACATCATTGGCCAGGTGTGCCACACCCCCAAGTCTTACGACAACGTCATGCACGTTGGCCTCCGCAAGGTCACCTTCAAGTGGCAGAGGGGCAACAAGATAGGCGAGGGCCAGTATGGCAAGGTGTACACCTGCATCAATGTGGATACTGGAGAACTGATGGCTATGAAGGAGATCCGGTTCCAGCCGAACGACCATAAGACAATAAAGGAGACAGCAGATGAGCTGAAGATCTTTGAGGGCATCAAACACCCCAACCTGGTCCGCTACTTTGGTGTTGAGCTGCATCGGGAGGAGATGTACATCTTCATGGAGTACTGTGATGAGGGGACCCTGGAGGAGGTGTCCAGGCTTGGCCTACAGGAACACGTCATCAGGCTGTACAGCAAACAGACCACCACGGCCATCAACGTGCTCCACGAACACGGCATTGTGCACCGAGACATCAAGGGAGCCAACATCTTCCTGACGTCGTCCGGCCTGATCAAGCTGGGGGACTTTGGCTGCTCTGTGAAGCTGAACAACGCACAGACCATGCCCGGAGAGGTTAACAGCACCATGGGCACGGCAGCATATATGGCACCTGAGGTCATTACCAGGGCAAAGGGCGAAGGCCACGGACGAGCAGCTGACATCTGGAGTCTGGGATGTGTCCTCATAGAGATGGTGACTGGGAAAAGGCCGTGGCACGAGTACGAGCACAACTTTCAGATCATGTACAAGGTGGGTATGGGCCACAAGCCCCCCATCCCAGAGAAGCTGTCCACAGAGGGGAAGGATTTCCTGGGTCACTGTCTGGAGAGCGAGCCCAAACAACGCTGGACTGCCAGTACACTGCTAGACCACCCATTCGTCAAGGTTTGCACAGATGAAGAGTGAGTGAGGGGGAACGGACCCTGTGGCTGTCACGTTTACAAACTATAGCACTACTGTACATGTTGGCCAGAGACTGGACACAGCCAGATAGAGGGGCTTTGGACACAAGAAGAGGGGCTTGTGAACATAGGAAACAGAAAATGATAACTGCAGGCACATGGAGCTAAACTGAGGAACTCTTATGACATCATTTCCGATGGATCACCTGGGTCGTGTTCAATTAGAACAGCTTGTTTTAGTTTTGTCTTTGAAATTGTTTTGGCTACGTTGtgtcctaatgaacatgaccctgtagTCGAGTGACAGGTCTTGCATTTTCTGGAAGGGGATAGCGGGGAATGTATTGCATTGTACATACTATAATAATAGGATTGGTTCATTGGATCCTTCCTTGTATAAACAATATTGTAAAGCTTGAGTAATAAATATAGCCACATCTTGTTGTTCTCTCACTGGTGAAGATAAGATAGAAGACCTGAATAAAAAGGCAAATGAAGACATTTTAAAGAAATGGGGGGAAATAAAGCTATGTCACTTTTTTTTACTGTTCCCCTTTCAGTGAGTACTAGGGGACAAGTAGGGACAGTTAAGGGGAGGAATTCAGATATCTGGGTCTCGTTCAGTAGACATGTTGTGGAACATTGCAGCTAGAAATGtcgaggcatgtttgttctacaatGTTGTGCCCTTCTGAATTTGCCCCAGGTTTGGTCGAGGCAGATATTGTCTTTCCTTTCCTTGTTTGAGGTGAGCTTCATTGCACAGAAGCAGGGGATGCTGCAACTGTAAGAAACTATTACCATGCAAATTAACACTCAAAGGCTGTAGAGAGCCCAGgaaggaaagaaacattttattttaaaatatatatttttttcttgctAAGGAGAGGATTCCAATGGTAATGTGGGGCTTAAGCCTatagtgcgtcccaaatggcaccctattcactatagtgcacttatggtcctggtcagtagtagtgcactatatagggaatagtgtgccatttgggtgCAGGGATGTGGGCGGGATTCTATAGGCTTCAGGCATGGATTGATGGTCAGTTAGACAGGTGTGCCCTGACTGGACAGCTGGCGCATATCCAACCAATGAGAGAAGACAAAGTTGCGTGCTCACTCCCTGCTGCTGAGAACACACATACATTCTGGTCCTCTGCTGCTCTTTGTGTTTGctatgtacaaacaatattaaTAAATCTTTTTTTAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928469 lncRNA downstream 51218 32092003 ~ 32092291 (-) True G1686017
TU1928467 lncRNA downstream 52129 32091131 ~ 32091380 (-) True G1686015
TU1928465 lncRNA downstream 54334 32088823 ~ 32089175 (-) True G1686013
TU1928320 lncRNA downstream 259610 31882736 ~ 31883899 (-) True G1685883
TU1927759 lncRNA downstream 407306 31734856 ~ 31736203 (-) True LOC110499326
TU1928564 lncRNA upstream 32402 32258624 ~ 32262170 (-) False G1686103
TU1928565 lncRNA upstream 32402 32258624 ~ 32272244 (-) True G1686103
TU1928594 lncRNA upstream 83912 32310134 ~ 32314207 (-) True G1686128
TU1928638 lncRNA upstream 171897 32398119 ~ 32398482 (-) True G1686157
TU1928651 lncRNA upstream 200852 32427074 ~ 32466581 (-) True G1686170
XM_036956185.1 mRNA downstream 336851 31734856 ~ 31806658 (-) False LOC110499326
XM_036956186.1 mRNA downstream 336851 31734856 ~ 31806658 (-) False LOC110499326
XM_036956162.1 mRNA downstream 978238 30610654 ~ 31165271 (-) False LOC110498787
XM_036956165.1 mRNA downstream 978238 30610654 ~ 31165271 (-) True LOC110498787
XM_036956176.1 mRNA downstream 978239 30610654 ~ 31165270 (-) False LOC110498787
LOC118942460 mRNA upstream 275907 32502129 ~ 32502308 (-) True LOC118942460
LOC118942014 mRNA upstream 428735 32654957 ~ 32656185 (-) True LOC118942014
XM_021576418.2 mRNA upstream 433999 32660221 ~ 32661706 (-) True LOC110499335
XM_021576419.2 mRNA upstream 450148 32676370 ~ 32688426 (-) True LOC110499337
XR_002469938.2 mRNA upstream 476496 32702718 ~ 32704450 (-) False LOC110499340
TU1927277 other downstream 730665 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 1029823 31111555 ~ 31113686 (-) True G1684661
TU1925348 other downstream 2597192 29541348 ~ 29546317 (-) False LOC110499315
TU1928979 other upstream 585485 32811707 ~ 32812854 (-) True LOC110499342
TU1929489 other upstream 851588 33077810 ~ 33078027 (-) True G1686887
TU1929645 other upstream 1307451 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 1317464 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 3032767 35258989 ~ 35259818 (-) True G1689130

Expression Profile