RNA id: XM_036956195.1


Basic Information

Item Value
RNA id XM_036956195.1
length 3351
RNA type mRNA
GC content 0.44
exon number 7
gene id LOC110499334
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 32291265 ~ 32476165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATGATACCTGCGCGTGTGGGTGCACTGTACTGTAGCCTATTAGCTCGagctcccactccctctcctgtTCCCGTTACCCGGTGAATGATATCAACAGAGCGTTTTGCCTGTTCCCTACTGAGCGAAAGAGCACGCTTGAAAGGAGAATAACATCAAACCGCACATCTGAACGACAGCCAGAGCGCATGGAACCAGAGAAAATATAGGCTACCCACAGCAACGGCGAGAGCACATTGACAGGACAACGGGAGGactgtttattcaagttggaCGGATGATTTAGCGAACACAATTGAGTAGACTGCCCGGCGGATGATAAGCGTCCGGGACCGGTGCTGTCGATTGTGCGAGGAGGCAAGTTAACGTTACCGGAAGAAGAAGATGAAGTCGGCTGGGGTCGTGGAAGGAGGACTGTTCACAGAGAGTTACTGCAACATCTGTAATGCCCAACTCATCTCCGAGTCGCAACGCACAGCACACTATGAGagtAAGAAACATGCCAATAAGGTCCGTCTCTTCTACATGTTACACCCAGAAGACGGAGGCCCACCTTCCAAGAGACTGAGACCAGACAAccctgACAGTGCAGAGACAGAGGTGGACAGCAATAAGTGCTGTACGTTATGTAATATGTTCTTCACGTCGGCCATCGTGGCCCAGTCTCACTACCAGGGCAAGACACATGCCAAGAGAGTACGACTGGTACTGGGAGAAACACCCAGCTTACCTACTGCTACCAACAGCCCTACCACCACAGACTCATCCCCTTCCACCCCCCAGCCCAGCGACTCAAACCCTGCTCCTCCTGCCCTACCACGGTCCTCCTCTCTAGCACCCCCGGTGGTGTTGGtgggtagtggtggtagtggtgagacAGGGAAGTACTGCTGTCTGTGTGGAGCATGGTTCAACAACCCTCTGATGGCCCAGCAACactatgaggggaaaaaacatcgCAGGAATGCAGCCAGAGCACAACTACTGGAGCAGCTAGCTGGCAGTCTGGACGCTACCGAAACTACAGGTCTCCGCAGCAGATACTCCTGCagtgtatgtagtgttgtgttgaacTCCATTGAACAGTACCACGCACACCTCCAGGGCTCCAAGCACCAGAACAACTTGAAGCAGGTCCAGCAGTGAAGCACTGGAACCAGAGACCTGTGGACATGTGGAGAATGGGAAAATGGGAATACTAAACATGGGAATACAGAGCATTGTAAAACGAAAATAATATTGGTTGTGGAAGTTTGGAAGAGACTTCTACAGATGGcttaggactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttttaatctGACGATGTCCTGGAGGTTACTGACCATCTAAGTGTTTGATATGTGTACTTTGACCCCACAGCAGTCAGAAAACCATTGGATGTTGCCAGCGATCGCCATGCTGtttgtgtgcgtcccaaatggcaccctattccgtttatagtgcacttcttctgacgagggcccatagggctctattaaaaagtagtgtactatagataCTCCTTTTGTGAACCACAATCCTACAATCTAAGTGATGTCAGTGTTACCCAGAGCGGTGATAACCGTTACAATGATAGTCATAGAGAAGAAGAAACAATATCATCACCACTATATCAGTCCAGAGGGTCAGGGCTGCAATACATATGTAtacaaatatataataaatatattcaTACAATATATTTTCTAAACGCCTGGAAGTTATCTGTGCAACAGCTCCGGTGCTCAGTGAGTGGCTCATAAACATATATTGATATCTATAGTAAATATATGCAAATGTAATGTATGTTTACATACGTTTAGATATTCAACTATGTTTTCAGCACTCAGTTCCATGCAGAAACAGGGAGAGGAAAGACAAATATGTCAGCCAATTGAAAGGGGTTTTCCCAACTTTGGGTGATGCCAGACAGTCTTTGGTGCCTATGTAATACAAACTGTTACACAGCCATTTTTAAAGTGGTAGCTGATATCCTGAATTTGTCACGAAATGACTGATCATTCAACTCAGATAGACAGGGATATGCATTGTTTATGACACTTCTATTCAGAGCGATATAAAGTCAATTCATTTGAATACAATGTTTTTAAGGATACAATCTGTAACTTGAATATCCTCAGTGGCTACTCAATGTATTGCAAACACACTTGGCCAAGACACTTAACAAAAATCAACCGGTTACATCTGCCAAAACACACTCTCTTCACTTTATATACACAGGTTCAGTGACAGCACTTCGAACCGGAATTGAAAGTAACAGATTGTAACTTTAAACAACCACGTAGTTCTTTTAAACTAAGGGTCAGTATCTATGGTTCAGTAAACATTCCTATGTTTTGTACCTCTGTGATTAATGATGTCATAGACACGAGACAGTGTCAGTCAGAATCCCTTTTCTCTGAAACCATATATGAGACGACACCATTTGTTTTTCGACCATACTGATCTAGAGTCAGTTTGCAGTTTCCTGGACTCACTGGCATAAAGCACATACTGTAGTCAGGATGGTGGCCCTCAGTaactaagtgttattgtttaccTTGAGAAAGCCACGAGGAGTAACTCTGCCACTACCAAAACATATGGTGAGACATCAATGGAACGCAGACCGCGGGGGACAGGACAAGGACGCCGTCATTGGCACTCATTCAGAAATGCTGATCCGACAAAGTTATTATTTGTCAAATCCGTCATAAATGATGTGTTCTAACAGGCCAACAATGTAGTTACTAAAATCTGATTTGCATATacagtatttggctgttttgctGCATAATATTTAGAAGTTGTCCTTTTCTAACTGGTGACTCCCGTTCGGAGAAGCTGGTAATGGTGGAGCATAGCTGGTGGTGGTGGAAGTTGAAGTGTAATGCAGTTGATCGATGGCGATGAAATGAACATGTATTCGAGGTTAAAAACCATACAAGCATTACACTTTTGTTTTGacctcaacatagtgtgaaataTACACATAGGAACAATAAACTAAATGTAGGCTCATTTTGCTGGGGGACAATGAGGAGATTCTAGATCTATCCTCCACGGGAGGACACGTGCATGGCGTTTCCATGGTTTTAGTCAAACTCTTACGTGATCTATCTAACGGTTACCACCAACCTATGTTTGTCATGGGCATCTCTAGCCACTGGTACATCGTATCGTTCTAAAAAGGCAAGACGACAGTTCCATGCTATGCCGTTTTTCtgtttgttgatgttgttgagaGTTGAATGTATTTTTCCCCTGTGAAGTGGTGaacacattaaaaaaaatgttcttTTTGCTTTGCGTTTTAACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1928076 lncRNA upstream 50059 32238364 ~ 32241206 (+) True G1685680
TU1928023 lncRNA upstream 114043 32176773 ~ 32177222 (+) True G1685630
TU1927984 lncRNA upstream 146515 32141653 ~ 32144750 (+) True agpat4
TU1927968 lncRNA upstream 181528 32109522 ~ 32109737 (+) True G1685584
TU1927956 lncRNA upstream 197289 32093649 ~ 32093976 (+) True G1685572
TU1928224 lncRNA downstream 4105 32480270 ~ 32480604 (+) True G1685791
TU1928227 lncRNA downstream 6696 32482861 ~ 32483070 (+) True G1685794
TU1928231 lncRNA downstream 10750 32486915 ~ 32487149 (+) True G1685798
TU1928232 lncRNA downstream 11231 32487396 ~ 32487632 (+) True G1685799
TU1928238 lncRNA downstream 22642 32498807 ~ 32499015 (+) True G1685805
XM_021576416.2 mRNA upstream 29088 32245903 ~ 32262177 (+) True kcnk1b
XM_021576412.2 mRNA upstream 147801 32123986 ~ 32143464 (+) False agpat4
XM_021576413.2 mRNA upstream 147801 32123986 ~ 32143464 (+) False agpat4
XM_021576414.2 mRNA upstream 147801 32124009 ~ 32143464 (+) False agpat4
XM_036956190.1 mRNA upstream 218177 32034200 ~ 32073088 (+) False thbs2a
LOC110499531 mRNA downstream 136793 32612958 ~ 32613933 (+) True LOC110499531
XM_021576423.2 mRNA downstream 213922 32690087 ~ 32702525 (+) True LOC110499339
XM_036956202.1 mRNA downstream 226626 32702791 ~ 32736730 (+) False LOC110499338
XM_036956198.1 mRNA downstream 226637 32702802 ~ 32736730 (+) False LOC110499338
XM_036956199.1 mRNA downstream 227573 32703738 ~ 32736730 (+) False LOC110499338
TU1924589 other upstream 2714707 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 2714707 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 2833344 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 3512856 28778006 ~ 28778409 (+) True G1681792
TU1923119 other upstream 3564770 28717361 ~ 28726495 (+) True G1681180
TU1928807 other downstream 178189 32654354 ~ 32661648 (+) True G1686317
TU1929194 other downstream 701128 33177293 ~ 33185276 (+) True LOC118942060
TU1930380 other downstream 1849672 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2905544 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2905544 35381709 ~ 35384566 (+) False LOC110499396

Expression Profile