RNA id: XR_005037982.1


Basic Information

Item Value
RNA id XR_005037982.1
length 6290
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC118942060
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33177293 ~ 33196167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccggttactagtccaacgctctaaccactaggctaccctgccgccccagcgaTCTGCAATGGCCCTACTGTAGCAATAgcacaaaatatttttttgaaaactCAATTGTACCTTTTACCTGAGACAGATATCATTTTAACAGTTCAACATCTTACATAACTAAATATTTTTCCAGTTAAGGAGGACAGCACTGCACTTTGCCTCCATCGAGGGACACTCTACCGTCATCCAGAAGCTTCTAGAGAAAGGAGCTAACATCAATTCTAAAGACCGGCTGGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGaggcgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGGTGagacgtgggtgtgtgtgttccagctgGAGTCCAGAGCTGTTCACTGGGCCTGTAGAGGAGGAAGCCTGGCTGTGATCGAGGTCCTCCAGAAACATGGAGCAGACCTCAACATCAGGGACAAGcTGATGGCCAGCCCTCTCCATGTGGCCACCAGGACAGGCCATTCTGATGTAGTGGGACACCTGCTGAACAGTGGAGCCAAAATCAACGCCAGAGACAGGGAGGGGGACACTCCTCTGCATGATGCTGTGCGTCTGGGCAGATATAAGATACTCAAGCTGCTCATTGTTGGAGGGGCTGATACAAGGCTCAAAAACCATgaggGCTTTACAGCAGTGGAGCAGGTGAAAGAGTGGCAGTTTGACACCAAGGAGACTCTGGAGAAACTGGACCAGCTGAGGGAGGTGGGTCTGGTACCCCCACTGTTACCTAACTTACCAGACCACCAAATCTGCCTTCAGCCCTAAACCTACACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCTTCATCGCGAAACCTCTACATCCCACTGCTACATACCTAACCAGAGTCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCAATGGTACCTAACTTACCAGACCACCAAATCAGCCTTCAGTCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCTTCAGTCCTAAACCTCCACATCCCACTCTTACCTAACTTACCAGACCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGTTACCTAACTTACCAGACCACCAAATCAGCCTTCAGCTCTAAACCTCCTATCCCACTGGTACATACCTAACCAGATCACCAAATCTGCCTTCAGCCCTAAACATCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGATCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACAACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCTCCACATCCCACTGGTACATACGTAACCAGATCACCAAATCAGCTTTCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTACACCTCCACATCCCACTGGTACATACCTAACCAGATCACCAAATCAGCCTTCAGCCCTAAACCTCCTATCCCACATCCCACTGGTACATACCTAACCAGACCACCAAATTAGCCCTAAACCGCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCCCCACATCCCACTGGTACATACCTAACCAGACCACCAAATTAGCCCTAAACCGCCACATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCCCCACATCCCACTGGTACATACCTAACCAGACCACCAAATTAGCCCTAAACCGCCACATCCCACTGGTACATACCTAACCAGACCACCAATCAGCCCTAAACCTCCTATCCCACTGGTACATACCTAACCAGACCACCAAATCAGCCCTAAACCTCCACATCCCACTGGTACATACCTAACCAGACTACCAAATCAGCCCTAAACCTCCTATCCCACTGGTACATACCTTACCAGACACCACCATTTCAGCCCCTGACTGGGTGCATAGGGCTTAACTTCAACTCCCATCCTGGACAGGCACAGCGTGTGCAGGCTTTTGAGTCCTCTTAGAAAAAATAGTGCTATCTTGAACCTAAaaaggttatttggctgtccccatatcctatttggttccaggtagaaccctttccacagagggctgtacatggaacccaaaagattTCAATCTGGAACCAAAAACGGTTCTCCAATGGGGACATTTTGTAACCCTTTTTTCTACAagtgtaaatcaaaactagacgatGAAGTGAggtttgtgcccagtgggctaCTGCATATTTGATCAAGTCATTTCAATGCAGACCTACAGTCATGGCAAACTCTCATCATCTTGTTTTCTGGTTATATTTGATGTAACAGGATCGTACTGTTACAGTAGTGGCCTGATAATATATGCTCTACTCTCCTAGTGTGTGTCTGCATGGCTCTCAGGAACATAAACCAAGCACTTTTACTTGTTATAAGCACGTTTACTGTATTTGTTATATATTTCCTGCATACTCACACCCCTCATGTACATGGTATTTGATTCATGTGTTATCTGCAGTGTGTCCTTCTAGGACACAACAGGCTGAAGTTCAAAGATTAGTTCTGTGTGCCGTTATACCGGTGAGGTTGAGACTGCTGCTTTCATGTCATCTGCTTTTgctgaaaatacatttttagaaaagTCCTTTCAGCTGAGCAGTGTGGTGCTGGTGACTGGACTTATTAAAGCAACTCATTGGCGATTCTCTTCTGAAGAGCTTTAAAACCCCTGAAAAGCTGTGTTCTTGCATTAGAATCATTAGACGTTGAAGTCTGTGCCTAGTGGGGACACTATCTTGCCATGTAGGCTTGTCACCATATATTCAATATAAATTGCAGATAATCCATATGAGAATCCAAGATTCCCAGTACATTCACTGCTGGCGTTGCTCTCCAACATTACACCATCCATGGTGATATTAAATCAACAAATGATTTACTAATGTATGTCGAAGTGCATTTTTGTTCTTGTTGTTAAAAGTCTTTAAGAGCAGTACTTTGTGAGCAGATTTAAAATACGACCAATGCAGTAGGCCCATGTGTTGATTGCATCACCATAGCTTTATATCAGCATTAGGTTCTGATTTGAAACTGCATTTGGTTTATCCTCCACCATTATTACAGTAATTAACAAATGACTGTCCATCAGCAGTTGTTCCACGTTTAAAGGTCACTGGAAAACTGTTCATTTTACAGAGGCTAGAGTCACAGACAATGTTTAGTTAAAACTGGCTCTATTGTCTCTGTGGTGCCCCGGGGGTGGATGGGATGGTTGGGGTGGCTGTTTTTCCTTTGTTAAACACCTCGGATTGGGTTAGAAATGTGTGGACATACTTCCGTGGGTCCAGTGGAAATATTTTCCtgttgtcatcataggtacagtcCTGCCTGAGGGGAAATGATCTCTGGCTCAGGGATAAACCTGTCAGAATGTATTTTGGTTTGACTACACATGTACACTGTATCGCTGAATATATCGCTGAATAGTGGAAGGACTTAAAGCAGTAGTAACAATAGTATAAGCCCTGTGAATGTGAGTTCACTGTACCTATGCCAAGAGGTCTGGATAACTGTGGGGTTGCTGGTTCAAGCCCCACTCCATAGGTTCTCCATAAATCACTACAATGGTATTGATTTGAGTGCAATGTCTAAAAAGCACCTGAAAGATAAAGCTATTAATATTAGTAGCAATCCTCACTTTACAGAACATGttcctgcctagttaaataaaggtaaacaaaaataaataaaaaatatataaaactggtTCAACTTTGACTTCTGAGTCATCGGGGGACATTGTTGCCATAGTGACAGTATGTTGTGTATTGTACAGAAAAGGTGCATCCAAGCGTGTTGGTTTTGAACAGAGAATGTATGTGTATGCCAATGTTATTTATATTAGCTTAGAAAACCTATAATCAACTGCATATTTCTGTATATAATTTACCATGTAGTGTCCTGCTGACATCCACACATAAAGCTCATTCCAAATCAAATAAACAGCAGATTTCAGTAGGATATCCAGTAAGCCTCCCTTTGTCGTAGTGGGATCTcgatgttacctcctctccttggtagagcaacatgctcaatgcctgtgtatttgagggaggagataggatggttagcttcaacaaagtgagctgctactggatAGTCAATGTTCGTATCGTATACCTGATTGAGTTGCGGTGTTCAGCTATGTgttgttttaattgtattttcGTTTGTCCTACGTAGGCTTTTCCACATGAACAGGTGATGAGATAGATTACTCCCTTGGTCTTGCATGAGATGATACCCCTAACAGGGATTTTTCAACCTGTATAGTTCTCAATCAGTAAACATCAACTTTACAAAACCCACACTAAAACTATGACACTTGATACTACATATCCACAGTTGTTTCCTGTCGCCTTCTCTTCTCACATCTGCTCTGACATGAAAGAACAGCATTGGCACAGATCAAAACTATTTCCAATTAGGTCTCCACCATATTTCTCTCTTCTACACTGTATTTACAGTTAGTGAAAtttgagaggagaagagaccactatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCACTATAGACTATTGAGATGTAGGAGAGGAAACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCACTATAGACTATTGAGATGTAGGAGAGGAAACCActatagactattgagatgcaggagAGGAGACCACTATAGACTATTGAAATTCAGGAGAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcagggGAGGAGACCACTATAGACTATTGAAATTCAGGAGAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcagaaGAGGAGACCACTATAGACTATTGAAATTCAGGAGAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggaCAGGAGACCACTATAGACTATTgaaatgaaggagaggagaccactatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagAGGAGACCActatagactattgagatgcaggagA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929191 lncRNA upstream 10051 33174042 ~ 33175013 (+) True G1686640
TU1929187 lncRNA upstream 16035 33167196 ~ 33169029 (+) False G1686636
TU1929186 lncRNA upstream 16035 33168449 ~ 33169029 (+) True G1686636
TU1929180 lncRNA upstream 37973 33146738 ~ 33147091 (+) True G1686632
TU1929179 lncRNA upstream 38348 33146479 ~ 33146716 (+) True G1686631
TU1929213 lncRNA downstream 8121 33204288 ~ 33205058 (+) True G1686659
TU1929209 lncRNA downstream 20138 33216305 ~ 33248974 (+) True LOC110499352
TU1929212 lncRNA downstream 71651 33267818 ~ 33268441 (+) True G1686658
TU1929254 lncRNA downstream 120851 33317018 ~ 33317263 (+) True G1686699
TU1929255 lncRNA downstream 123628 33319795 ~ 33320009 (+) True G1686700
XM_036956206.1 mRNA upstream 52239 33063035 ~ 33132825 (+) True LOC110499532
XM_021576428.2 mRNA upstream 321675 32849697 ~ 32863389 (+) True LOC110499344
XM_036956203.1 mRNA upstream 425017 32747591 ~ 32760047 (+) True LOC110499341
XM_036956201.1 mRNA upstream 448334 32703738 ~ 32736730 (+) False LOC110499338
XM_021576436.2 mRNA downstream 20105 33216272 ~ 33262134 (+) False LOC110499352
XR_005037985.1 mRNA downstream 278773 33474940 ~ 33517443 (+) False LOC110499354
XR_005037986.1 mRNA downstream 278773 33474940 ~ 33517443 (+) False LOC110499354
XR_005037984.1 mRNA downstream 279141 33475308 ~ 33517443 (+) True LOC110499354
XR_005037983.1 mRNA downstream 332631 33528798 ~ 33529479 (+) False LOC118942063
TU1928807 other upstream 523416 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3608506 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3608506 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 3727143 29457228 ~ 29457921 (+) True lhcgr
TU1923788 other upstream 4406655 28778006 ~ 28778409 (+) True G1681792
TU1930380 other downstream 1129670 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 2185542 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 2185542 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2485200 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 2505053 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile