RNA id: XM_036956215.1


Basic Information

Item Value
RNA id XM_036956215.1
length 4048
RNA type mRNA
GC content 0.44
exon number 8
gene id LOC118942062
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33503010 ~ 33514611 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagagagagactcttttTCATTCTGTTCTTTCCCCATTCCCCCATCATCAGACaagcagagtagagcaggacagagagagacgtgAGCCAACAAGTGCAGAACAGAACAACTccacaaagagaagagagaggaggatagttCCCTTTGCAAGGACAGAAAAAGAGAAGAAAATCAAGCCTTTCAGAAAACACCAACAGTAGAAGAAATATGAGACTGCAGCACATTTAAATCCAATAATCTTCTTTGCTCACCAACTGAGGACTTATTTGTAGCCCCATTTTATGTTGGAACAGTTAGATTTCTTTCTCATTCTACAAGAGGCTACACACTGATTGTAGAAAACCTTCACTGTGTAGTATAACTTTTTGAAGAGAGAAGTAGGAGGCTACAGAGATGGAGATCATGCCCGGGAGAGGAGCTTGTTCTGGAGCAGGCATGGGGAGGTTACCTGGGTACCTGGTGTGTGTGCTGGTTCTCTGTGCCCTGGTGACAGGCTATGCCAGCACATGCCCTGCCCTGTGCACCTGCAGTGGCACCACAGTTGACTGCCATGGGCTGGGCATCAAAACCATGCCCCGGAATATACCTCGCAACACAGAGAGAATTGCTGGAGCCCAGCTCCGCCCACAAggtgggagagaagaagaggaaggaccAGATCAAGAACCTCATCACTGGCACTGTCTGGAAAGATCTGGGCCAGCAATTTAAAAAGGAGGTACATATCAGAAATCTTCGGTCTCTCTTTAAGAAGCCCAAGCTGGAGAAAAGGGACATTGTGGAGCCCAGTGAGACTGGATCACTAGCAGCTCTCTTCTCCCCAACACAGGAGGACATCTAGGAGAACATAACAGCACAGAGAGGCTCTCAGActggactaacacacacacacactttctaccCTCCCCAGTGGAAATTTAGGATTGGCTCATCAAGGGTACAACGTCTCTATCctattggtcaacagtaggatGAATGGACTCTACAAACTGTGGACAAAGAGAATCAGAATATTCTGTCATGGACTGAACCCTGCTAACTGGTCATACATATTTATCCAAataatgtgtctgtctgccttgATCGAGAAAATGGGACAATGTGTCtgaagatgatgaagatgatggatATTGTCCTTCAGAGGACATGGCTGCTGCCATAAACCCTGCAGGTTGTAAATGGTAACAACACATTGCATTTACACAGCTCATATCTTCACTAGCACAACACATTTAACTTACATTGTGTTTTTGGTATCTCCTCTAACATGGGCCATCCACCTGGCTGCTAAACATAGAGAttgatagaggactcatctttatatCGGTGTCATTATAGCGTCTGACAGCATTGAGAATTGAGGCTACAACCCAGGGtcaagtagtcaactgggtggggattcctatttTAAAATGGTGGATGATGGCAATGCCCAAGGGGTGATacccatgatgagtcctctatctatgtCTACGGTGCTAAACAACAGCAGCAATTTTGTGCCAGAAGAATCTGAATGGAATCCAGTGAGCATTTCTGAGGTGGGAGACTTCAGAGTATCTGTATAAGgagagctgtcatcaagtcaaggTTTTGTACAGAATCATTACTCTGTTGATGGATGAAGTAGAACTGTCATTAATGTGAATTTATGTTTGTTTGTTCTAGTTCTCCCAGCTATGAACTGATGAGAAACCAGCACTACATTCCTCttatgttaaagggatagttggcTGCAACAAGTCTTGTCAGACATTATTGTTAAAAACTGACTTGTGGCTCATATTTTATAAATCTGTTTTGAAGGTGACATTGTTTCCACTTGGAAAATATCTACAAGCCTCAATCAGGGGACAAAGTATTTAAAATTGTAGTGCTTTTTCTATTTAGCTGTTTTTAGACAAAAGTAGACTAGAAAGTCAATTTAAATGGTTGATTTGACCATTTGCTGTGTTATGCAATGGTCTACAAATATAAGTATTATTTTGAAAATGTTCTAGCCGTGTTGTGGgggtaaaaaataatatttatagttagagaaataaaacatattttaaatgttGGATGTTAAATATTTAAACAGGACCAGAGACTTGAAACTCCACCCCCGAGTCCATGATGACTAAAGTTCATCTCAGTGCTGTAACTTTAATAACTCTCCAGGACTCATGTCTGTCTGACACACAACAACACTGGGATTTTATTTAGATTGTTCTGAAATATCAGGGTGCTAAACCAACCAATACAAGGTAATATCATCAAGACGGTGAACTTTACATGCATCTTCACTTGCTTTGAATAACGTGTCCGTTTAAGAGAGGACGTTTTAAAAGTGAAAGTGAAATTAACTTTCAGATCTCATACCAGAACAGGGAGTGACACCGTGTGAGAAAATGGCTTCTAGTTCATCTCTCCCAGAGGAGGATTTCTCCTGTACGGTGTGCCTTGACATCTTTAAGGATCCTGTCATTTTGCCATGCAGCCACAGCTTCTGCCAAGCCTGTCTAAAGGAATGCTGGAAAGACGAGGAATCTCGGGAATGTCCAGTTTGCAGGAGACGATCGTCTAAGGATCATCCCCTTATAAACCTTTCTCTATTGAACCTGTGTGAGGCCTTACGGGAAAGGAGACAGACAGATCCAACCACAGGGTCCAAGGTGCTCTGCAGTCTACACAGTGAGAAACTCAGtctgttctgtctggaggataaaGAGCCCATCTGTTTGGTGTGTCAGGTCTCAAGGAAACATAAAAATCATGACTGCATCCCTGTAGATGAGGCTGTACAGGATCACAAGGAGGAACTCCAGACTGACCTGAAGCCCTTACAGGAGAAGCTGAAGGTCTTTAATAAAGTTAAACAAACCTGTGATCAAACAGCAGTGCACATTAAGAGCCAGGCCCAGCACACAGAGAAGCAGATTAAGGAGGAGTTTGAGAAACTTCACCAGTTTCtacgagaggaagaggaggccagGATAGCTGCtctgaaagaggaagagaagcaGAAGAGTCAGAAGATGAAGGAGAAGATTGAGCAGATCTACAGAGAGATATCATCACTTTCAGACACAATCAGAGCCATAGAGGAGGAGCTGAAAGATGAAGACATCTCATTCCTGCAGAACTTCAAGACCATGAAGGTAAGAGCCCAGTGCACAATGCCAGATCCACAGCTGGTGTCAGGGGGGCTGATAGACGTGGCCAAACACCTGGGAAACCTGAAGTTCAGAGTCTGGGAGAAGATGAAGGAGATCATCAAACACACTCCTGTGATTCTGGACCCCAACACTGCATCCtcctggctctgtctgtctgatgatCTGACCAGTGTGAGTCAAACTGGCCCAAAGCAGCAGCTCCCTGACAACCCAGAGAGATTCATGAAGTATGCAACTATTCTGGGCTCTAAGGGGTTCAGCTCAGGTAAACACAgctgggaggtggaggtgggggatcATCCTGACTGGAACCTGGGCGTGGCTAAAGAGTCAGTTGACAGGAAGGGGGATGTTTATATATCACCAAAGTATGGATTCTGGGCTATACTGCAGAGGAGTGGTAAGTATATTAATGGAAAGGGAGAGACCGTCCTCCTGAAGAAGAAACCCCAGAGGATCAGAGTTCAGCTGGACTACGACCAGGGGGAGGTGTCCTTCTACGACTCCAAAGACATGACACTCATCTACACTCATAAAGACACATTCACTGAGACTCTCTACCCGTACTTCTCTATTGGATCAGCTGGTGATGCCAAAAGCACTGGTGTACAGATCTGCCAATCAGAGGTATCAGCACATGTCAGTTAAACATGCTGTATTGGTTAATTAGTCTAGTtaatctagccagctatctaaactatTCATCATGACCGAATTACTAACCTTGCATGCAGGGtacgtgcccaggggccctgacctccagggagcCCCAATTGATTATgttgtgtagaattgcatgaaatgatgTGTAAAACTACAAAATAATTGTTCTGTAATGCAAACTCATATGTTTACTTTTTGTTAATAAAACTCTTGTTCTGCAAA

Function

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929709 lncRNA downstream 39726 33463039 ~ 33463284 (-) True G1687068
TU1929684 lncRNA downstream 95121 33407604 ~ 33407889 (-) True G1687044
TU1929678 lncRNA downstream 114398 33388284 ~ 33388612 (-) True G1687038
TU1929672 lncRNA downstream 141087 33361724 ~ 33361923 (-) True G1687032
TU1929669 lncRNA downstream 145707 33357096 ~ 33357303 (-) True G1687029
TU1929713 lncRNA upstream 9774 33524385 ~ 33538069 (-) True LOC110499360
TU1929637 lncRNA upstream 16473 33531084 ~ 33532916 (-) False G1687007
TU1929790 lncRNA upstream 111383 33625994 ~ 33626216 (-) True G1687143
TU1929806 lncRNA upstream 124946 33639557 ~ 33639948 (-) True G1687159
TU1929811 lncRNA upstream 127949 33642560 ~ 33642795 (-) True G1687164
XM_036956217.1 mRNA downstream 3091 33489351 ~ 33499919 (-) True LOC110499353
XM_036956216.1 mRNA downstream 8507 33489351 ~ 33494503 (-) False LOC110499353
XM_036956219.1 mRNA downstream 16752 33475694 ~ 33486258 (-) True LOC110499355
XM_036956218.1 mRNA downstream 22164 33475694 ~ 33480846 (-) False LOC110499355
XM_036956210.1 mRNA downstream 30409 33292275 ~ 33472601 (-) True LOC110499533
XM_036956212.1 mRNA upstream 3039 33517650 ~ 33520902 (-) False LOC118942061
XM_036956213.1 mRNA upstream 3039 33517650 ~ 33520903 (-) False LOC118942061
XM_036956211.1 mRNA upstream 3039 33517650 ~ 33520906 (-) True LOC118942061
XM_021576442.2 mRNA upstream 16334 33530945 ~ 33535225 (-) False LOC110499358
LOC110499360 mRNA upstream 22623 33537234 ~ 33544273 (-) False LOC110499360
TU1929489 other downstream 424983 33077810 ~ 33078027 (-) True G1686887
TU1928979 other downstream 690156 32811707 ~ 32812854 (-) True LOC110499342
TU1927277 other downstream 2090166 31407594 ~ 31412844 (-) True G1684920
TU1927010 other downstream 2389324 31111555 ~ 31113686 (-) True G1684661
TU1925352 other downstream 3956693 29541348 ~ 29546317 (-) True LOC110499315
TU1929645 other upstream 19062 33533673 ~ 33534276 (-) True LOC110499358
TU1929638 other upstream 29075 33543686 ~ 33544238 (-) True G1687007
TU1931970 other upstream 1744378 35258989 ~ 35259818 (-) True G1689130
TU1931971 other upstream 1745275 35259886 ~ 35260208 (-) True G1689131
TU1932340 other upstream 1963503 35478114 ~ 35480057 (-) True G1689461

Expression Profile