RNA id: XR_005037983.1


Basic Information

Item Value
RNA id XR_005037983.1
length 523
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC118942063
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33528620 ~ 33530380 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTACACACAGGGTTATCTATGGAGAGGTGTATAATACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTACAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCAATCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCAATCTACACACAGGGTTATCTATGGAGAGGTGTATGGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTACGGTACTGACCCCTCTACACACAGGGTTATCTATGGagaggtgtagtggtgtataaTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTACAGTACTGACCCCTCTACACACAGGGTTATCTATGGAGAGGTGTATAGTACTGACCCATTTACACACAGGGTTATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929323 lncRNA upstream 22741 33491588 ~ 33506057 (+) True G1686760
TU1929321 lncRNA upstream 26389 33488179 ~ 33502409 (+) True G1686759
TU1929320 lncRNA upstream 51651 33476617 ~ 33477147 (+) True G1686758
TU1929305 lncRNA upstream 67994 33460602 ~ 33460804 (+) True G1686748
TU1929302 lncRNA upstream 73875 33454699 ~ 33454923 (+) True G1686745
TU1929311 lncRNA downstream 4200 33533679 ~ 33559019 (+) False G1686753
TU1929310 lncRNA downstream 29028 33558507 ~ 33559019 (+) True G1686753
TU1929761 lncRNA downstream 75759 33605238 ~ 33605655 (+) True G1687114
TU1929789 lncRNA downstream 96462 33625941 ~ 33626164 (+) True G1687142
TU1929803 lncRNA downstream 107659 33637138 ~ 33637356 (+) True G1687156
XR_005037985.1 mRNA upstream 11355 33474940 ~ 33517443 (+) False LOC110499354
XR_005037986.1 mRNA upstream 11355 33474940 ~ 33517443 (+) False LOC110499354
XR_005037984.1 mRNA upstream 11355 33475308 ~ 33517443 (+) True LOC110499354
XM_021576436.2 mRNA upstream 266664 33216272 ~ 33262134 (+) False LOC110499352
XR_005037982.1 mRNA upstream 332631 33185064 ~ 33196167 (+) False LOC118942060
XR_005037988.1 mRNA downstream 131842 33661321 ~ 33787514 (+) False LOC110499362
XM_036956221.1 mRNA downstream 132115 33661594 ~ 33775767 (+) False LOC110499362
XM_036956222.1 mRNA downstream 132115 33661594 ~ 33775767 (+) True LOC110499362
XM_036956223.1 mRNA downstream 420273 33949752 ~ 33958728 (+) False rab23
XM_021576451.2 mRNA downstream 420274 33949753 ~ 33958728 (+) False rab23
TU1929194 other upstream 343522 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 867150 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 3952240 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 3952240 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 4070877 29457228 ~ 29457921 (+) True lhcgr
TU1930380 other downstream 796358 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 1852230 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1852230 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 2151888 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 2171741 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile