RNA id: XR_005037987.1


Basic Information

Item Value
RNA id XR_005037987.1
length 5375
RNA type mRNA
GC content 0.50
exon number 34
gene id LOC110499361
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 33545819 ~ 33578200 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACACCTATTTTGTGGAACGTTCATGCGCAGTACTTTGTGCATGTGGACATGCTGTGAATTATCGAAGCGCGTGCAGTTTACCCATTCTGCAGGTGTTTTGCAAAGTGAAGTACCGTTAGCATTTATCTCACTTTCTGAAGACGCTACTCAAAGTCATGGGTGAACCAGTGTCTGAAATGTGTGATCACCTCATCAAAGCTGTTAACGTGATGATGGACGCGGAATCTAGTCAAATATATCGTCTGGAGGCCCTAAAGtTTTGTGAAGAATTCAAAGAGAAGTGTCCATTCTGTGTTCCATGTGGGCTACAGTTAGCAGATAAAGCCCAAACAGCAGTGGTGAGGCACTTTGGTCTACAGATACTGGAGCACGTCATCAAGTTCAGATGGAACAACATGCCACAGCAGGAGAAAGTCCAGCTGAAGAACTGTGCCATGGGGCTGTTGTCATCTGGCACATATCCTATCCTGGAGGAGGAGAGTCACATCAAGGACGTTCTCGCACGGATCATAGTGGAGATGATCAAGAGAGAATGGCCTCAGCACTGGCCTGACATGCTCAAGGAGATGGAGGCACTGACCAGCATAGGGGAGgcccagacagagctggtgaTGATGATCCTGCTGCGGCTGGCGGAGGACGTGATCACCTTCCAGACGCTGCCCGCCCAGCGCCGCAGGGACATCCAGCAGACCCTCACCCAGAACATGGAGAGCATCTTTAGCTTCCTGCTCACCATCCTGCAGCTCCACGTCGACGAGTACCGCAAACTGAAAAAAATACCAGGCCAAGAATTGCAGGCCAAGGCCCACTGTCGTGTAGGCGTGGCTGCTCTGAACACCCTGGCAGGCTACATAGACTGGGTGGCCCTGGCCCACCTCACCAATGACAACTGTCGCCTGCTGGAGATGCTATGTCTGCTGCTCAGTGAGACAGAGCTGCAGCTGGAGGCTGCCGAGTGCCTGCTCATCGCCATCAGCCGCAAGGGGAAGCTGGATGACAGGAAACCGCTCATGGTGCTGTTTGATGATGTCGCCATGCACTACATCCTGTCTGCAGCACAGTCTGCAGATGGAGCAGCAACATACAACACATCCTCTCCGACACAGCCAGTGGTGGAGAGACACTACATCTTCCTGAAGAGGCTTTGTCAGGTCCTGTGTTCCCTTGGCAGCCAACTCTGCTTCTTAGTGGGTTCAGGTGTGGAGGTAGATGTACCTGCAAACCTCAGCAAGTACACAGAAGCATTCCTGGCCTTCACCACTCACCCAAGCCAGTTCCTAAGATCTTCCACCCAGATCACATGGGGAACCCTGTTCAGACATGAGATTCTCTCCAAGGATCCTGTCATCATCCAGATGATGATCAAGTACTTCAGAGCCACCATGACCAACCTAGTCAAGACTGGTTTCCCTTCCAGGAACGACAGTCCCAGCTGTGAGTACTCCCGTCATGACTTCGACAGTGATGAAGACTTCAACTCCTTCTTCAACTCGTTCCGAGCGCAGCAGGGGGAGGCGGTCCGGAACGCGTGTCGCGTCGTTCCCTTGGAGGGCTTCCAGATTGCAGCAGAGTGGCTGCAGTATCAGATCAGTACACCCATTGACATCGGGACCACTGGGTCTAAGATGGCAGAGGGGCTGTGCTCTATCCTGTCTCCGTCAGCGGTCCAGTGGGATGCTATGACCTTCTTCACAGAGAGTGTTGTGGGACAGATCTTCAAGAACGTGGAGGTTGAGAAGTTGCCAGTAGATCAGGGCATTGAGCTGCTACAGGCAGTGTTGAACTACAACACCCAAGACCCTCTCATCCTGTCCTGTGTCCTCAccaacctctcctccctcttcccctttgTCACACACCGACCTCACTTCCTGCCTCAGGTCCTCTACAAGCTGTTTGCCTCCATCACATTTGAGGTGGTAGAGGAGAGCAAGGCGCCACGGACGCGTGCGGTGAAGAACGTCAGAAGACACGCCTGCTCCTCCATCATCAAGATGTCTCGAGATTACCCATGGTTCATTCTGccatGTTTTGACATACTGTATAATCAGGTGAAGAAGCTGTTCTCCAACGAGGCCCTGTTGACCCagatggagaagtgtgctctgATAGAGGCTCTGGTCCTCATCAGTAACCAGTTCAAAGACTACACCAAGCAGAAGGCCTTCCTGGAGGAGCTCATGGCCACCGTGGCTGCTCGCTGGACCTCCGACGAGATGAGGCAGGTACTGTTGGAACCTGCTCTGTTCCTGGCTTTCGTTGGTGCTGATCAGCTGATGGCTGAAGGCACAGACCACACAACAGGCATCAACAGGTCAcggttGAGTTTCTGTGTATACACCATCCTGGGGGTGGTGAAGAGAGCGCGCTGGCCGGCTGACCTGGAGGAGGCTAAGGCGGGGGGCTTCGTGACGGGCTACACCCCTTCTGGAGCCCCAATCTACAGAAACCCCTGCACCCCCCAGGTCCTGGCCCTGCTGCCCAACCTGCTCGCCCTCATCAGAACCCACAACAATCTGTTCCTGCCGGAGAACATGTGTCGTCTGAGTGAGACGTTCTCCAGAGCCTACGAGGTGATTGAGGTGGAGAGGAAGGTGGTTCTAGGCCTTACACAGCCAGTCCTGGACATCTATGACTCTCCAGTGTACAAGACTCATCTGGAGCGCATGCAGGGTTTCTTCTGTACCCTCTATGACAACTGttaCCATATCCTGGGGAATGCAGGCCTATCATTGCATCAAGACTTCTACACCATCGAGGGATTGGCTGAACAGATTGTTGGTTCCGCCTTAATCTCCCTCGACAACGTGCCTGACCACAGACTCCGCCCCATGCTCCgggtgtTCCTGAAGCAGCTGGTGCTGTCGTGTCCTCAGGAGTACTACGACAGTCTGCTCTGCCCCCTACTGGGCCCTCTGTTCGTCTACATGCTTCAGAGACTCAACCTCAGGTGGCAGATCATCAACCAGCGGAGTACTGTCGGtatggaggaggacgaggacgagGCGTGTGAGGAGAACCAAGTCACCcaggagatgctggaggaacagCTGGTTCGTCTGGTCACCAGAGAGGTTCTGGACCTGCTCACTCACGCCTGCATACTGAAAAAAGTTCCTGAGCCAGCAGGGAATAAGGAGGATGTGGATGAGGATGAGATGATGTCCACTGAGTCCCAGGCAGTCACAGCCTCTCCAGCCCAGCCAACAGGCGAAATGACTGAGCTGGGGAAGTGTCTACTCAAACATGAGgACATCTATATGACCTTGTTGACTATCTCGTTCACCTCTCTGTCCTGGAAGGACACCAGCAACTGTCACCGCACTGCCTCCATGGTGTGCTGGACCCTGCTGCGACAGGTCGTAGGGGGGAACCTTCTACCAGAGGCGGTCACATGGTTCTATGCCAGTGTTCTGAAAGGACTGCAGATGCACGGGCAGCACGAGGTCTGTAACTCAGCCCTCACACAACTGGCCCTGATTATATATGACAACCTGCGGCCACGATACATGGAGCTAAGGAGTGTGATGACTCAGATCCCCAGCATCAATCTGGAGGCTCTGGACCAGTATGACCAGCGGCTGCTGGAGCCCAGCTCTGCCCAGAAggtgggagagaagaagaggaaggaccAGTTCAAGAAGCTCATTGCCGGCACTGTGGGGAAAGATCTGGGCCAGCAGTTTAAAAAGGAGGTACATATCAGaaatctcccatctctctttaaGAAGCCCAAGCTGGAGAAAAGGGACATTGTGGAGCCCAGTGAGACTGGATCTCTAGCAGCTCTCTTCTCCCCAACACAGGAGGACATCTAGGAGAACATAACAGCACAGAGAGGCTCTCAGActggactaacacacacacacactttctaccCTCCCCAGTGGAATTTTACTCCTGAAGGATTGGCTCATCAAGGGTACAACGTCTCTATCctattggtcaacagtaggatGAATGGACTCTACAAACAGTGGACAAAGAGAATCAGAATATTCTGTCATGGACTGAATGAACCCTGCTAACTGGTCATACATATGTATCCAAataatgtgtctgtctgccttgATCGAGAAAATGGGACAATGTGTCtgaagatgatgaagatgatggttGTTGTCCTTCAAGAGGACATGGCTGTTGCCATAAACCCTGCAAGTTGTAAATGGTAACAACACAATGCATTTGTACAGCTCATATCCTCACTAGCACAACACATTTAACTTACATTGTGTTTTGGTATCTCCGCTCACATGGACCATCCACCCAGGTGCTaaacatagagatagatagaggactcgtCTTTATATATGTATCATTATAGTGTCTGACAGCTTGGGCAGCACCATTTGAGGCTCAACCCATAGTctagtagtcaactgggtggggattcctatttTAAAATGGTGGATGATGGCAATGCCCAAGTTAAAATGGGTTATacccatgatgagtcctctatctatatctatgGTGCTAAATGACAACAGCCATTTTCTTGCTAGAAGAACCTGAATGGGATTCAGTGAGCATGTCTGAGGTGGGATAATTCAGAGTAGTCTGCTGTATAAGGAGGAGCTGTCATCAAGCCCAGGTTTTGTACAGGATCATTCCTCTGTTGATGGGTGAGGTTGTCAAGTAGAACCGTCATCAAGCCCAGGTTTTGTACAGGATCATTCCTCTGTTGATGGGTGAGGTTGTCAAGTAGAACCGTCATCAGTGACTATGTTTTGAGCTGGTGTTTCTCCCAGCTATGAACAGATGAGAAACCAGCACGACATTCCTCTTAGGTTAAAGGGATCGTTTGCTGCATCAAGTTTTGTCAGGCGTTATTGTTTGTAAAAACTGACTGACTAGTGAAGAGCTCATATTTTATTCATCTACAGGAATGGAaaggggattcctagtcagttgtacaactgaaagcattcaaccgaaatgtgtcttccacatttaagccaacctctctgaatcagacctCAATCCCAGATGGATGAGAATAGAAACTAGGCACCAAGTGTATATGGTGCCTGTCAGTTTCACATTCATTTGCTATTGAGGCCTACAGAATTATTTACACTAAAGACGCCATGGAATCCTCTAATATAGACTGCTCTGTAATATAGACTGCTCTGTAATATAGACTCCTCTGTTACACCAGTGTTCAGGTCTGACAAACATTGATATTTTTGTGAACTACCCTTATAAATCTCTTCATCCTGTCAATTATTGTTTTGTTCACATGTGGCCCTTTTTTCCTCCTCAACACCAAGGAAAAAATGATCTGTACTTGTACAGGggacaaaatataaaacattttagtGCTGTTTAGATTTTTctgtttttaaataaaataatcttCAAAGTCA

Function

GO: NA

KEGG:

id description
K14289 XPO5; exportin-5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1929713 lncRNA downstream 7750 33524385 ~ 33538069 (-) True LOC110499360
TU1929637 lncRNA downstream 12903 33531084 ~ 33532916 (-) False G1687007
TU1929711 lncRNA downstream 26044 33504882 ~ 33519775 (-) True G1687070
TU1929709 lncRNA downstream 82535 33463039 ~ 33463284 (-) True G1687068
TU1929684 lncRNA downstream 137930 33407604 ~ 33407889 (-) True G1687044
TU1929790 lncRNA upstream 47794 33625994 ~ 33626216 (-) True G1687143
TU1929806 lncRNA upstream 61357 33639557 ~ 33639948 (-) True G1687159
TU1929811 lncRNA upstream 64360 33642560 ~ 33642795 (-) True G1687164
TU1929830 lncRNA upstream 75940 33654140 ~ 33654477 (-) True G1687183
TU1930044 lncRNA upstream 207897 33786097 ~ 33787474 (-) True G1687385
LOC110499360 mRNA downstream 1546 33537234 ~ 33544273 (-) False LOC110499360
XM_021576442.2 mRNA downstream 10594 33530945 ~ 33535225 (-) False LOC110499358
XM_036956211.1 mRNA downstream 24913 33517650 ~ 33520906 (-) True LOC118942061
XM_036956213.1 mRNA downstream 24916 33517650 ~ 33520903 (-) False LOC118942061
XM_036956212.1 mRNA downstream 24917 33517650 ~ 33520902 (-) False LOC118942061
LOC110499535 mRNA upstream 271860 33850060 ~ 33938490 (-) True LOC110499535
XM_021576454.2 mRNA upstream 390888 33969088 ~ 33971824 (-) True bag2
XM_036956225.1 mRNA upstream 393942 33972142 ~ 33983683 (-) False znf451
XM_021576455.2 mRNA upstream 393942 33972142 ~ 33983889 (-) False znf451
XM_021576457.2 mRNA upstream 393942 33972142 ~ 33983890 (-) False znf451
TU1929638 other downstream 1581 33543686 ~ 33544238 (-) True G1687007
TU1929645 other downstream 11543 33533673 ~ 33534276 (-) True LOC110499358
TU1929489 other downstream 467792 33077810 ~ 33078027 (-) True G1686887
TU1928979 other downstream 732965 32811707 ~ 32812854 (-) True LOC110499342
TU1927277 other downstream 2132975 31407594 ~ 31412844 (-) True G1684920
TU1931970 other upstream 1680789 35258989 ~ 35259818 (-) True G1689130
TU1931971 other upstream 1681686 35259886 ~ 35260208 (-) True G1689131
TU1932340 other upstream 1899914 35478114 ~ 35480057 (-) True G1689461
TU1932446 other upstream 2065168 35643368 ~ 35643777 (-) True G1689556
TU1932874 other upstream 2287500 35865700 ~ 35866784 (-) True LOC110499416

Expression Profile