RNA id: XM_021576467.2


Basic Information

Item Value
RNA id XM_021576467.2
length 3686
RNA type mRNA
GC content 0.50
exon number 27
gene id zmp:0000000760
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34184080 ~ 34208986 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTGAAGTGTGTTTCAGTAGACGCAACGGGCCTATGGGAGATTTCAGATCCCCTGGGGACCGAAGGTAGAGTGGAGCACAAGGGTCAGGTCTTCCTGAGACCCACCACTGTCAGACTGAATGATCCTCCTGTTTAAGGCAAGGTTTGGCCTAGGGATGCCACTTTAAAATTGGTTACATCCTCACTGCGGGAACTGTAAAGGAACAGTCTGCAGTCCACATCGGGGCCTCTTTTTCAAGAATATGTGAGTGATTTTTACAATACTGTCTACATTCATCTACagGCACATATAATCCCTGACACATCACCTTTTCAAAATGCCAGCCTTCAAAGAGATGCTGGTTTTCCCAGTGCTTCTAGCTCTCGTTGGATTGACCAAATGCCAGGAGTTACCAAGTTATGACATGCTAGAGGAGTTCCGTGTATCTAAGTCCAGAGGGGTGAGGAAAGTGGTTGGATCTGAACCTGATTCAGTGGCCTACCGTGTGAACCCTGCCATCCACCTACGCAAAACCATGAGCGATGTGTACCCCGATGGCCTGCCCTCCGACTACTCCGTCATTGCCACATTTAAGGTGACGAAGGACACCGCCAAGAGGTCCTGGAACTTGTGGCAGGTCAGCGACCCCGATGGACGTGAACAGGTGGGCCTCCGTTTTCAGGGTGACACACACTCTCTGGACTTCTTCTACACCAGCCCCCATGGCACCCAGATGCTACGCACCTTCCACCGGGTGGACAAGCTGTTTGATGGAGAGTGGCACAAGCTGGCGCTGCAGGTCAAGGCCGATAAGGTCAAGTTGCTGGTGGACTGCGAGGAGGTGAGCGTGGAGCCCATCGGTGATCCTAGACCCGTCATCCGCCAGGGTTACACCTCTATCGTGAAGAGGGCTGTGGGAGATCACTCCGCCTCAGTAGACCTCCAGCAGATGGATGTGTCCTGTGATCCAGAGAAGGCCTACTCAGAAGGCTGCTGTGAGCTCTCCAGTGTGTGTGGCGGGCATGCTGAGATTGGCCTGACAGCAGGAAGGGCCACCTGTAAGTGTATGCACGGACAGCCTGGCAACCAGGGACCCCCAGGACCGAAGGGTCACAGAGGTCTGCCAGGCAACACAGGAGAGCCAGGAAGACTAGGCAACTGGGGAGGTATGGGGCAGACAGGTGACTATGGCCACGTTGGAGAGCCAGGCCCTAAGGGCATCGCAGGAATCAGCGGGAACAAGGGGATGAGAGGACTTCACGGCCTTGATGGCGACAGAGGTCCCAAAGGTCTGAAGGGATTACATGGCGCCGGGGGCTTCAAGGGAACTCAGGGGTCACCTGGAGAGCTGGGTGAGACCGGAGTACAAGGAGAAACGGGTGATCCAGGTCCACTTGGATATGAAGGAATTCCAGGATATACAGGAGTGAAGGGAGAAGAAGGGGCCTCCGGTGTTGAAGGACCTCCTGGGCCACAGGGAAAGCAGGGTGTTGTAGGTGATCCTGGAGAGTCAGGAGTTGCTGGGGAAAAGGGAAAACCTGGAACCCAAGGATCAAAAGGAAGATATGGCACCATTGGACAAAAGGGCATTATAGGAGATCCTGGTTTGCCCGGGAGAGATGGGGACATGGGAATAGAGGCTTACCAAGGACCCCAGGGCCCGGAGGGCAGAAACGGACAATTCGGAATAATGggagagaaaggaatgCTGGGGCCGGCAGGGGAGATGGGGCCTCAAGGCCAAACGGGCCCCAGAGGTTATAAAGGATCAGCAGCAAAGCCAGGAAGACCCGGATTTATTGGACCCCCAGGACCTGTCGGGCATGTGGGAGTAGCTGGACGGCCAGGCCCCAAGGGAGATATAGGCATTGAAGGGATCCAAGGTGTCAATGGTGAAACGggagaaaagggagaaaaGGGCCCCAAAGGCGAGGTTGGAGACGCGGGTGCACAGGGTCCCCACGGTGGTCGGGGGAAGCGTGGGCCAGGGGGCGAGCCTGGACGCACAGGCCCAGTCGGAACAAAGGGGGTCCGTGGCGATGGAGGACCAGTCGGATTTCAGGGGCCGCCAGGGCCACCGGGCCCAACCCTCTCCGCACAACACGTGATTGAGGTCTGCAAGAGAGTGGTGCTGGAACAGATGTCCACCTTTGCCAACTCGGTGAAGAGGACGTGTGCCGCCGTGTGCCCACTCTATGGAGACGTCCCCTTGGGTGCCCCCGGTCCCTCTGGACAAAAGGGACCCCCGGGACCTCCAGGTGGTGATGGTATTGCCGGTGTGAATGGAGAGATCGGACAACCAGGATTCTATGGGGAGGTAGGAGACGCAGGCCAACAAGGACAGCCAGGGGATCAAGGAGATCAAGGAGATAAGGGAGCAGAGGGCCATGGCCTACCTGGCTACATCGGAGACCAGGGACCAAAGGGCCAACGTGGAAGACCTGGCAGAGCCTTCAATGGCACACCAGGACAAGAGGGCGAGAGAGGCCATGTAGGCCGGCCTGGACTGAGAGGTCACCCAGGACTACGAGGAGTCCCAGGCGTGTGTCAGACCACTGGGTGCGCTCTGctaaacaacaacacaaccaacgGATCACCTCAGAATGCACCCCAGAGGTTGAGAAGACACCCATAGAGGCAAAGAGGACACTTTTGACCAAGCTGCATGGATGTATTaataaagggagagaggaggagagggggagatgtgtattgggagagagaagagattttTTGTTGATAAACGTATTCAAATCAAAGTCTAAATAAATGCTTAAATGTAAATATGCATCCAATCTCCACCCTGAATGACTGAGATATCCATTTGACTTTCTCAAATAAATCAGTTGTAGAAACTTGTGCTGTTGGCCTTAAAACAACACCCCATTCTCATGGTTCATTTGAAAAAGACACCAATAGCTACAGTATTATTTTTGTTAAAAATTATGAAAGTTTATTTGACACATTTTATTGAAACTGATCCTAGTTGTCTTCAGATATCCCTGTTCTTTATAATAAAAGTCCAAAAACGATTGCTAACTTGTTTTACTAAAACATTTGCTccactgtttattttttattaccaTATATTATTGAGCTGTGCAGAATATAAAATCAAGCGTACAAATCATAATTAAACAAATTTCAGCAAAGTGTTTAACACAATTCTGTCGAGTCATGCTACCTACCTAAATCCAAAAACACTCAAAACCTCCCTCAAAAGGCTTACAGGATACTTGCATAATAATTCCCTAAAACATGAACATTTATTCCACCTCAGTTTATGACAGCCTCTGTCATCAGTTACACCATTGTTTAGGGCCACTATTATGGCCAATATGCTGTAACCCAAAAGTTGCTGTTATTGCTAGCAGTTACAGTTGGCCAACAGTTACTCTTTTGGCTTGCAGCTATTACTAGCCAATGGTTACTATTATGGCTAGCAGCATGCTGTAAAGGTAAATGTCTTTAATAACAGTTTGTGTCAGACAGTGAAACATCAGTTGCCATAAGCTGACATTAACTGTGAAATGATGATGTTATTTCATTATTATGACAATATTTTGTATGCCTTGTTTCTAGAGGGTTTAGGTGTTATCCAGAAGGCACAATGCTTTTTTGTTATGAAGTAACCAACTAAATGACCTATTGTAGTGGAAAAATCTGGAGCAAAAATGTGAAGCATAAAGAACAGTACACATTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930277 lncRNA upstream 163324 34020460 ~ 34020756 (+) True G1687581
TU1930212 lncRNA upstream 214034 33967099 ~ 33970046 (+) False G1687545
TU1930210 lncRNA upstream 214034 33969104 ~ 33970046 (+) False G1687545
TU1930211 lncRNA upstream 214034 33969104 ~ 33970046 (+) True G1687545
TU1930157 lncRNA upstream 288109 33895734 ~ 33895971 (+) True G1687496
TU1930326 lncRNA downstream 2547 34211533 ~ 34211909 (+) True G1687627
TU1930327 lncRNA downstream 3397 34212383 ~ 34212610 (+) True G1687628
TU1930379 lncRNA downstream 116381 34325367 ~ 34325584 (+) True G1687674
TU1930381 lncRNA downstream 117350 34326336 ~ 34326687 (+) True G1687676
TU1930384 lncRNA downstream 119956 34328942 ~ 34329146 (+) True G1687679
XM_036956226.1 mRNA upstream 5149 33984466 ~ 34178931 (+) True LOC110499368
XM_036956223.1 mRNA upstream 225352 33949752 ~ 33958728 (+) False rab23
XM_021576451.2 mRNA upstream 225352 33949753 ~ 33958728 (+) False rab23
XM_021576452.2 mRNA upstream 225352 33949753 ~ 33958728 (+) True rab23
XM_036956221.1 mRNA upstream 408313 33661594 ~ 33775767 (+) False LOC110499362
XM_036956230.1 mRNA downstream 16885 34225871 ~ 34268321 (+) False col21a1
XM_036956227.1 mRNA downstream 16887 34225873 ~ 34271548 (+) False col21a1
XM_036956228.1 mRNA downstream 16887 34225873 ~ 34271548 (+) False col21a1
XM_036956229.1 mRNA downstream 16887 34225873 ~ 34271548 (+) False col21a1
XM_036956231.1 mRNA downstream 16889 34225875 ~ 34271548 (+) False col21a1
TU1929194 other upstream 998804 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1522432 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4607522 29572435 ~ 29576558 (+) False LOC110499316
TU1924591 other upstream 4607522 29574758 ~ 29576558 (+) True LOC110499316
TU1924556 other upstream 4726159 29457228 ~ 29457921 (+) True lhcgr
TU1930380 other downstream 116851 34325837 ~ 34326254 (+) True G1687675
TU1932015 other downstream 1172723 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1172723 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1472381 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1492234 35701220 ~ 35702139 (+) True LOC118942012

Expression Profile