RNA id: XM_036956236.1


Basic Information

Item Value
RNA id XM_036956236.1
length 2245
RNA type mRNA
GC content 0.43
exon number 6
gene id hmgcll1
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34347154 ~ 34379366 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGAGGGTGCAGGTTGGGAACATGTGAAAGGACAGAGAGGGGGCATCACCCTGGGATGCAGAAACAGGCACTACAGTAACTGGCGTCACACCGCAAACACTCTATTTCAAAATAAATTCAAATGTCGTGATAAGAGCACAATATATGAAAGAATTGTTATGCCTACTGTTTAACGTTGACTTGCGGTCTAAAAGCAGGATCCTGTTCCTCCCAAAATTTACATATACACTAGATAAATTATAGGGACGCTATGTgtctccatcttggcactcccccacgTTGTAgaaaatattttggaagctatagaaatgcatttattcatgtattttattctattacagacaccttaatacatacttttaaattatattatgtgagctaaaaaaaataataataatccttaAAAGTATCATTTTGAGCgattactaatgttactgtcctcaCTACAATaacaaaaatacttaaatacatggaATGTTGTGCTtgaaatatctcatttaaatATTGTAGAATTTAATTAATTCGTTCCTCCCCCACCATCTATCTTAAGTAAGTCTGCGTATTGGCAGATAGAGAGAGTACATCAAGTGAACACCCTTCTATCTTCCTCTCAACTTTTCCACCTACAACTGTTAGATTAGTTAGTCAGGtataatataaaaaaatatgtattatatgttatatataatATGTAAAAGATTATCAACTGTAAAATCGACAGTAGATATTATTAGAAACTCTGAACTGACACATTTTACACGTGTCATGCattattaaacattattaaaatgccAGCAGTGATCTGAAGATCAAAGTGTTCTGGGCTTAAAGAGCGACTGCCCCTAAAAAACAACGAATCCCTTTGAAAATGGCCTATGAGGCGTCCTTGTGAATCAGAAtcatttattctagtgtcaaaattgattACAAAGTGTAATAGCATAATTTTGGTTTTAAAGTCAGTCTCGCCTAAAATGGAGTTTGGAACCTCAGTGTGTCACAACAAATAAGTGAAGGTTGGGTTTGGATTACAATTATGTCAACAAATCATGCTACCCTTTTCCAAGCTCCACAAGCAAATCGCCCCTCAGCCTCCCTTTATTGAATGGGGCTCCCGTTGTTTCATCGCCCCCAACCAACACGTTCAAAGGATCATGCTTTTCCAGAAGGCTGCACAGCCAAAAGACAATGGTTTGCATGCCCTGCCGAAGGACCCTATCATGCGCAATAGGTGGTTGGATTTCATTGCTCTccagtggtgACAAAGTGCACAGTTGGTCATGAACGGATGCCAGGACCAACAAGAAAGAGCAAAGCTTCTCAGGAAAGACCTCAGAATAAAAGTACTTGTGTGataaggaggaccgagcactcccccattctcatcgacagggctgtagtggagcaggttgagagcttcaagttccttggtgtccacatcaccaacaaactagaatggtccaaacacaacaggacagttgtgaagagggcacgacaaagcctattccccctcaggaaactaaaaagatttggcatgggtcctgagatcctcaaaaggttctacagctggagcatgactggttgcatcactgcctggtacggcaattgctcagcctccgaccgcaagacactacagagggtagtgcgtactgcccagcacatcactggggctaagctgcctgccatccaggacctctataccaggcggtgtcagaggaaggccctaaaaattgtcaaagaccccagccaccccagtcatagactgttctctctactaccgcatggcaagcagtaccagagtgccaagtctaggacaaaaaggcttctcaacagtttttacccccaagtcataagactcctgaacagGCCAtaccagtcaacaccacctcaacaCCACCTCATAAGACTGCCTGCTGCACTTGTTCGAGAGATGTCCAGTTTGCAGCCGGACATGGGGGCCCTCATCAGCATAATTCAGACATGCCCCTCGCTTATCTTTGAAGAGGGGGCAGGAGCTAATCTACGCTGCCATGTCTATCAATGGGGCTCTGGCAATGACCTTACCTCTTGCCTGCCCACCAATGGTCGTCGATGGGGAGAACAGAATTAGaaacatgtatgGAGCCAGCACATGGAGACTTGCAAAATGATGTGATGAAGTCCAGACCGACAGACGCACTTGATACTGATGTCCTTGAATGTAGAGAGACCTGGAACTCATCATAAAATGTTTACTAGACACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930386 lncRNA upstream 18762 34331819 ~ 34332148 (+) True G1687681
TU1930384 lncRNA upstream 21764 34328942 ~ 34329146 (+) True G1687679
TU1930381 lncRNA upstream 24223 34326336 ~ 34326687 (+) True G1687676
TU1930379 lncRNA upstream 25326 34325367 ~ 34325584 (+) True G1687674
TU1930327 lncRNA upstream 138300 34212383 ~ 34212610 (+) True G1687628
TU1930437 lncRNA downstream 56041 34410818 ~ 34411022 (+) True G1687730
TU1930438 lncRNA downstream 56413 34411190 ~ 34411410 (+) True G1687731
TU1930439 lncRNA downstream 56744 34411521 ~ 34411722 (+) True G1687732
TU1930444 lncRNA downstream 59986 34414763 ~ 34419287 (+) True G1687735
TU1930575 lncRNA downstream 271941 34626718 ~ 34683245 (+) True G1687845
XM_021576472.2 mRNA upstream 38760 34273867 ~ 34312150 (+) True bmp5
XM_036956233.1 mRNA upstream 79362 34225875 ~ 34271548 (+) False col21a1
XR_005037989.1 mRNA downstream 144254 34499031 ~ 34503666 (+) True LOC118942064
XM_021576492.2 mRNA downstream 214278 34569055 ~ 34573880 (+) False klhl31
XM_021576491.2 mRNA downstream 214290 34569067 ~ 34573880 (+) True klhl31
XM_021576493.2 mRNA downstream 228539 34583316 ~ 34591320 (+) True gclc
XM_036956241.1 mRNA downstream 240180 34594957 ~ 34606103 (+) True elovl5
TU1930380 other upstream 24656 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1165634 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1689262 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4774352 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 1026932 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 1026932 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1326590 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1346443 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 1526801 35881578 ~ 35881874 (+) True G1689671

Expression Profile