RNA id: XM_021576487.2


Basic Information

Item Value
RNA id XM_021576487.2
length 3490
RNA type mRNA
GC content 0.42
exon number 14
gene id lrrc1
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34517238 ~ 34557314 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaacatttgGCAACAGAATCTGCCGAATGAGTACACCACTGGTCTGAGGGGAAAATAACTCTGGGACAACGAAATCAGTAGGCTACACGAAATAAGATCTAAACAGATATGTTTTCGGGAGCCGATTAGAAAAACTAACATTCCAGAGGCGACGTGAGTAAAGAATAAAAAACCAAGCCTACAAAAGTATTGAATGTGAGAGCGCTAGACACCGTTTTTATTCCATGGTGCCCATTGGTATTTATTTACGCCTGGGGGAGGTGGTTAAGATGTTTGCTTTGGAAATTCGTTCGACCAACTGCAAGAAAGTGTTTGGCAAGCAATCTAGTAGCTAGGTGTCTGTATTCAGTTGCGCCTTCCGTTTCTTTAATTGGACGTCTATTCGGGATATTTGTTAAGAACGGATTTTGCCATCACCCGGTGATGTTTCACTGTATACCTCTGTGGCGGTGCAACCGTCATGTTGAAGTGATCGATAAGCGGCACTGCTCTCTGTTGTACGTCCCGGATGAGATCTACCGCTACAGTCGGAGTTTGGAGGAACTTTTGCTGGACGCTAACCAACTCCGCGACCTGCCCAAGCCATTTTTTCAGCTGGTAAAGCTACGAAAGCTGGGCCTGAGTGACAACGAGATCCAGAGGCTTCCTCCAGAGATAGCCAACTTCATGCAGCTGGTAGAACTTGATGTCTCTCGTAATGACATCATAGAAATTCCTGAGACCATTTCTTACTGTAAAGCTCTCCAAGTAGCAGACTTTAGTGGAAACCCATTAACAAGATTGCCTGAGAGTTTTCCAGAGCTCCGGAATTTAACTTGCCTTTCCATCAATGACATTTCGTTGCAGATTCTTCCCGAAAACATTGGAAACCTCTCCAACTTGGTGTCACTGGAACTCAGAGAGAACCTGCTAACGTATTTACCAGAGTCACTATCGCTACTTCACAGACTTGAGGAACTTGACCTGGGGAACAATGAAATTTACAATTTGCCTGAAACAATAGGCTGTCTTGTCAGCTTGAAGAACTTGTGGCTGGACGGAAACCAGTTGGCTGAAATACCTGCAGAGATAGGCAGCATGAAAAGCCTCCTGTGTCTAGATGTATCGGAGAACAAACTGGAGCACCTTCCAGAAGAGATCGGCGGCCTGGTCTCCCTAACTGACCTGCTGGTGTCTCAGAACCTCATCGATGCTCTGCCAGAGGGCATAGGAAAACTAAGGCGACTGTCTATATTGAAAGCAGACCAGAATCGTCTTGCCCAGCTGCCAGAGAGCATTGGCAACTGTGAGAGTCTCACTGAACTGATGCTCACAGAGAATCAGTTACAGAGTGTGCCAAGAAGTATTGGAAAACTAAAGAGACtctccaacttcaactgtgacagaaaCCGATTAGCATCATTACCAAAAGAGATTGGAGGTTGCAGTAGCCTGAATGTCTTCTGTGTACGAGAGAACAGGCTTACAAGGATTCCCTCTGAGATCTCTCAGGCCTCAGAGCTGCATGTGTTTGATGTCTCCGGAAATAGACTGCTCCACCTACCCATTTCTCTGACTGCGCTGCGACTCAAGGCCCTGTGGCTGTCAGAGAACCAGTCGCAGCCTCTGCTCACTTTCCAGAATGACATAGACCCAGAGTCTGGGGAAAAGGTGCTCACCTGTGTTCTCCTGCCCCAGCAGCCTTTAGAACCAGAGAGTAAAGGCTCAGACAACCTTGCTCGCTGTGGTGCTCTGGAGAGCCTGGTGAATGACATGGTGGATGACACCTGGGGCGACAAGGCCATGAAGAGGATCAGTGCCATCCACTTCCTGGATGATGACGATGACGAGGATGATGAAAAGggaAGGCTGATGCGACAAGCCACTCCTCACCCAGGTGAGTTAAAGACTATGAAGAAAGCGGTGGAGAACCTCCGCAACGACCTGAACGCTGCCAAAGCTCTGGATTCCAACAAAAACGTGGTCAATAACACTACAGTCACCACGTCTGTGTGACCTCTACCTCAGAAACATTCTGATCTCCTGTGTCTCTCGCCATGTTCTTCTGTACCACCACCAGAACCTACTTTAATCCCACAAACCCCTCCTGCGGCCTCCCTACCTAGCCCTCCTGCGGCTCAACCCTGGGACTCTGCTGTGATCCTTTTGTCCAGTACCTTACTTCATCTCCAATACACACCATGGTATCTGGCTCAGACTACCAGGGCCCATGTGCCTTCTTTTCAAACTGTTGTGCTATATTTTTTAACATAGCAATAATCTGCACAGGTGTGGTCCTTTTTcaaagacatttgaaaaatgtTGCTTTTTAAAGATTTATTtctacatttctttttaaatggATAATAGGTAGTTGCACTACTGTAAGTCTTTAGTATATTAAATATTGTTGacatattcataaatattatatttgttttattttttagaacactgggtgaatatttttttgttgaaaaTTTCGGGTTACTTGACCAACTGATTTAAGGATTACTGTATAGTCATTTTGTGAATATTGATAATTTTATACTTTTTGGCAGCTCAGATGGTGTAAATTAAAACAATGTATAGCAAGTTTCTTAATCTATGGCAGAATTGTTCTAAACGATATTACTTTGTACGTATTTTATTTCCTTTTAAGTAAAGAAATGAACAAAAATGCAGTTGCTAATGTCTTATCGTAATTGACTTTGGGTGAATAGACGGCCTCGACTCTTTTCTATGCCATTGTTTAACTTCTTAATCAAATCCTAAACAAATTTTGATATAGACATGTTTTGTAATTAAGGGCTAATGCAGTGAGCAACGTGTACCTTAACCACAGCAGATTGAGTGGAAGTGACAGGGCTGTCTTACTTTCTTTTATTGCGCTTCATTGCTTTGAAATGTTTTCTTAAGTAGatacggggcggcaggtagcgtagCGGttaagtgttgggccagtaaccaaagggTTGCTgatttgaatccctgagccgactaaggaacaaaaaaaaacaaaaaaatcggTGACCTTGAGCAAGGCGCTTAACCCTAATTGGTCctctaagtcactctggataagagcatctgctcaatgactaaaatgtaaatacttTATCGGAAACTGCAGAATTTTTCAATGTCTATTTCTCTTTTAACACATGTGCATTGGACTTTCAATGGCCAATTTCATTCCACGCAAAAGGAAATGAGGACCATGGTGGAACCGTTTGGAAAATGCAGTTTAAGCATGAACTCATGCActtagttttttttgtcttaataaAAACAATTTGTTGTTCAAATGGTAAACCATAacaatgattttagttttttgtttgttgtattaccaggagaaacatatacatttgttttatctttatttttaaataattttcTTTAGTTATCAAGCTGCACATAAACACAATCTCAAATAGGCACGGACGCTGAGCCTACAGATTTGGATGCCTTTTACCCACTGATAAAATTAAAGGGGTTTAAAACGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1931083 lncRNA downstream 10032 34506991 ~ 34507206 (-) True G1688291
TU1931039 lncRNA downstream 126691 34390248 ~ 34390547 (-) True hcrtr2
TU1931036 lncRNA downstream 127421 34389608 ~ 34389817 (-) True G1688246
TU1930962 lncRNA downstream 183089 34333847 ~ 34334149 (-) True G1688188
TU1930960 lncRNA downstream 185147 34331880 ~ 34332091 (-) True G1688186
TU1930993 lncRNA upstream 20449 34577763 ~ 34627016 (-) False G1688215
TU1931121 lncRNA upstream 30837 34588151 ~ 34588969 (-) True G1688328
TU1931133 lncRNA upstream 64727 34622041 ~ 34622397 (-) True G1688337
TU1930996 lncRNA upstream 66169 34623483 ~ 34627016 (-) True G1688215
TU1931155 lncRNA upstream 110350 34667664 ~ 34668042 (-) True G1688356
XM_021576481.2 mRNA downstream 18274 34470355 ~ 34498964 (-) True mlip
XM_021576483.2 mRNA downstream 18275 34469860 ~ 34498963 (-) False mlip
XM_021576484.2 mRNA downstream 18275 34469860 ~ 34498963 (-) False mlip
XM_036956239.1 mRNA downstream 18276 34468648 ~ 34498962 (-) False mlip
XM_021576480.2 mRNA downstream 18277 34454563 ~ 34498961 (-) False mlip
XM_021576490.2 mRNA upstream 2082 34559396 ~ 34568186 (-) True eloal
XM_021576500.2 mRNA upstream 49841 34607155 ~ 34612817 (-) True fbxo9
XM_021576504.2 mRNA upstream 74608 34631922 ~ 34634132 (-) True LOC110499388
XM_021576505.2 mRNA upstream 78841 34636155 ~ 34648964 (-) True LOC110499389
LOC110499538 mRNA upstream 91960 34649274 ~ 34683421 (-) True LOC110499538
TU1929638 other downstream 973000 33543686 ~ 33544238 (-) True G1687007
TU1929645 other downstream 982962 33533673 ~ 33534276 (-) True LOC110499358
TU1929489 other downstream 1439211 33077810 ~ 33078027 (-) True G1686887
TU1928979 other downstream 1704384 32811707 ~ 32812854 (-) True LOC110499342
TU1927277 other downstream 3104394 31407594 ~ 31412844 (-) True G1684920
TU1931970 other upstream 701675 35258989 ~ 35259818 (-) True G1689130
TU1931971 other upstream 702572 35259886 ~ 35260208 (-) True G1689131
TU1932340 other upstream 920800 35478114 ~ 35480057 (-) True G1689461
TU1932446 other upstream 1086054 35643368 ~ 35643777 (-) True G1689556
TU1932874 other upstream 1308386 35865700 ~ 35866784 (-) True LOC110499416

Expression Profile