RNA id: XM_021576490.2


Basic Information

Item Value
RNA id XM_021576490.2
length 2944
RNA type mRNA
GC content 0.44
exon number 11
gene id eloal
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34559396 ~ 34568186 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTATATAACCTGACTGTGGTGCAGCAGCGCTTTCGGGTCAATGAATGCACGTGAGCCAACGTGATGGACGCACTTGACGTGTCGAAGAAAGTGCTGCAGTTAAAAGTTCAGCTCAAAGAAACGACAGAATCAAAGAAGGTCCTGAAAATCTTAAAGAAACTAAGGGAGTTGGATATAACCCTAGACATTCTTGCAGAGACCGGAATCGGCAAAGCTGTAAACTCTTTGCGCAAGCATGGAGATGCAGGAGAAGCTGTTAGGCTATTGGTCAGTCACTGGAAGAAATTGGTTCCTAAAGAAACCTTGAGCCATACAGAGAAGGAGGATGCTTCACAGAGCAAGCTTTTGGTAACCGATGCAGAGACTCAAAACCGTTCAAAAGAGGCGTGCTCAAAAATAGAGGACCGAAGTCAAAATGCTTCAGAAGATGAGCGTTTAAAAACCGATGAGGACAACCAAGATGGTCCTACTTCAAGAGGGGTGCATTTGAAAACTGATGAGAAAAACAAAGGCACTTCAGAAAAAGAGCATTTGAAAACTGACAGAAATGAAGAAAGTTTGGAAACTGAATACAAAAACCAAGGTACTTCCAAAGATGAGCATTTGAAAACTGAAGACAAAAACCAAGGTACTGCAGAGATGTCTCATTTACAGGAAGTAGATGAAGACTCAAGTGAATTGAAAAATGATCATTTTAAAAGTGAGAAGGAAAACAAGCGTACTTGGAAGAAGGACAaggatgaggggaaaaaacagaaGGGGACACGAGAGTGTTTAATGGTTACTGGGAAAAAAAGTAATTGGAGTAGAAATTCTGAAGATGAAAATGTTGTGCTGCCAAACACAACATTTTCATCTAAGAGCAGCCACAAGAAAGCCAAGTCGATTTCCAGGGAAGAATCTAACAACAAATCAGATAACGGAGGGAAAAGTGGGGTAAGGAGAGACTCCAATACAGAAACACTGCCGTGTCCTAAACCATCCAGCGACGAGTCATCAAAATCTAAACCGGATAGAAAATGGACAGTTATTGACAAATCCAATGACCAAGACAAAACAGCGAGTGACTCCCTAGGTTGTAATGGAGAGAGGCGGAAACCAAGTGAAAGAAAGCAAGTCTGCCATGAAGACAAAAAGACTAAACAAGAGGGAATATCGAAGACCAAAGAGAAAATGGCGATTGAGGACAAGTCGAATGGCGATGACGTCGAAGTGCCCTCCATGTCTTTTGAGTCTTTCTTGAGCTATGACATCAACACGCCTAAGAGGAAGAAAAAATCTGACAGTAAAAAAACACCTAAGAAACTTAAGACTGTTGAAAAAGAAGTAAAGGTTGTGAAGACACACAGCACGAAATCCAATAAGCAGTTACCTGCGGCGACTGCAGATTTTTCACTGCCTAAAAAGGCTATGAAGGGGTCTGTGATGGACTTGCTTAATATTCCATTGCCAACATTTCTACCCGAATATGACGAGCTCTCCAACTTTAACTACTACGACAGGAAAATGGAAGAGAAATCTAAAGTCTTGGTCTCTGAGGGCCCGGTCTTCACTGGTCAAAGACTCAACCGGAAGATGCAGGTCTATTCTGGTGCAAAGTCCGCCTTTCTCCCAACCATGATGTCCTTGTACCAGCAATGTATTCGGGCACTGCAGAACAACATTGACTTGCTCTATGAGATCGGAGGGGTCCCATTTGAAATCCTTGAGCCAGTACTAGAGCGCTGTACACCTGATCAGCTGTTTCGTATTGAAGAGTGCAACCCGATGTATGTTGGCTTGACTGATCACTTATGGGAGAAGCACTGTCAGCGGGACTTCAGGAATGCCCATCTAGAGGAGTAcgagtcctggagagagatgcaTATGAGGCTAtctgaggaaagggagaggaagcTCCAAAGACTGACTAAAACCATAGTCTCTGCCCATTCAGGAAAACCCAAAGGCCGGCAGGTGAAAATGGCGTTTATTAACTCTGTTGCCAAGCCGCCTAGAAATGTGAGAATTCAGCAAGAGATCCATGGAACTGCAAGACATCCACGAATCCAGCAGGAGAACAATGGACCTACTGGTGTCGTACTGCCACCTCACCCACTGGACAGGCCCAGtgtCAAGGCCCAGGAAAACAGAGCCAGACCCTGCTATGTTGAACCTCCTAGGCCTAGCACCACTGTCTCTGGGACAAGCCAAGGACAAGATTCCCGCAAAAAAACACGGGTGGCACCTATGATGGCAAAGTCTCTGAAGGCCTTTAAAACGATGGGGCGTAGATGAAGGCCCTAAGAGGATGGATGGACTGCTGGAAACTGTTGTGGATACAGGTGCATTGATTCCACTTCATGCCTCCTTTTCACTATTCATTCCAGGCCAAAATGTCCCTTTCTTGGCCTACTTTACTTTTTGAGACCAAATTGGAGCTGtaactatacactgagtatacaaaacattaaggacacctgttgtttccatgagactgaccagttgaatccaagtgaaagctatgatcccttattgatgtcacttgttaaattcatttcaatcagtgtagatgggggggggggggggggagatgggctaaagaaggatttttaagccttgagacatggcttgtggcattcagagggtgaattggcaagaacggtacgacatccagccaacttgacaactgtggaatgctttcggcactttgtagagtccattcctgacgaattaaggctgttctgaggggtggggggtgtgcaactcaatattaggaaggtgtgttcttaatgttttgtatactcagtgtagctATTGGGCCGGGCCATCTTTGTATGAAGTTTTTTGCCCGTGCTGCTTGTAAAACAATTGCTGCATTTGAACGATGGGTATGTTTCAATGTTATTTGTTTGTTCATATTGTCAAACACTGAATTGCACTATTAAATAAGATGAAAACCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1931083 lncRNA downstream 52190 34506991 ~ 34507206 (-) True G1688291
TU1931039 lncRNA downstream 168849 34390248 ~ 34390547 (-) True hcrtr2
TU1931036 lncRNA downstream 169579 34389608 ~ 34389817 (-) True G1688246
TU1930962 lncRNA downstream 225247 34333847 ~ 34334149 (-) True G1688188
TU1930960 lncRNA downstream 227305 34331880 ~ 34332091 (-) True G1688186
TU1930993 lncRNA upstream 9577 34577763 ~ 34627016 (-) False G1688215
TU1931121 lncRNA upstream 19965 34588151 ~ 34588969 (-) True G1688328
TU1931133 lncRNA upstream 53855 34622041 ~ 34622397 (-) True G1688337
TU1930996 lncRNA upstream 55297 34623483 ~ 34627016 (-) True G1688215
TU1931155 lncRNA upstream 99478 34667664 ~ 34668042 (-) True G1688356
XM_021576487.2 mRNA downstream 2082 34517238 ~ 34557314 (-) False lrrc1
XM_021576489.2 mRNA downstream 2082 34517238 ~ 34557314 (-) True lrrc1
XM_036956240.1 mRNA downstream 13194 34517238 ~ 34546202 (-) False lrrc1
XM_021576481.2 mRNA downstream 60432 34470355 ~ 34498964 (-) True mlip
XM_021576483.2 mRNA downstream 60433 34469860 ~ 34498963 (-) False mlip
XM_021576500.2 mRNA upstream 38969 34607155 ~ 34612817 (-) True fbxo9
XM_021576504.2 mRNA upstream 63736 34631922 ~ 34634132 (-) True LOC110499388
XM_021576505.2 mRNA upstream 67969 34636155 ~ 34648964 (-) True LOC110499389
LOC110499538 mRNA upstream 81088 34649274 ~ 34683421 (-) True LOC110499538
XM_036956248.1 mRNA upstream 705028 35273214 ~ 35309946 (-) False LOC110499392
TU1929638 other downstream 1015158 33543686 ~ 33544238 (-) True G1687007
TU1929645 other downstream 1025120 33533673 ~ 33534276 (-) True LOC110499358
TU1929489 other downstream 1481369 33077810 ~ 33078027 (-) True G1686887
TU1928979 other downstream 1746542 32811707 ~ 32812854 (-) True LOC110499342
TU1927277 other downstream 3146552 31407594 ~ 31412844 (-) True G1684920
TU1931970 other upstream 690803 35258989 ~ 35259818 (-) True G1689130
TU1931971 other upstream 691700 35259886 ~ 35260208 (-) True G1689131
TU1932340 other upstream 909928 35478114 ~ 35480057 (-) True G1689461
TU1932446 other upstream 1075182 35643368 ~ 35643777 (-) True G1689556
TU1932874 other upstream 1297514 35865700 ~ 35866784 (-) True LOC110499416

Expression Profile