RNA id: XM_021576491.2


Basic Information

Item Value
RNA id XM_021576491.2
length 3447
RNA type mRNA
GC content 0.45
exon number 3
gene id klhl31
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34569055 ~ 34573880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGACTAGTATTGTGTCCCCCTCACACGTATTGGGCAATACTTCCATTCGCATGCTCAGAGGAGGAGTTTACTCCACTTTTCTGGCACTGTTGAGTATAACCAGTCTCTATTGCCCACTATCTGAAGGTGCAAGTCTTTTTtcacctgcttctcatctctttGGTCTGGGCTGTGTCCATCTGCTGCAGCCATGGCACCCAAAAAAAACAAGACTGCCAAAAAGAACAAAGGGGATAACAATGAAATTACTATAATGGTCGAGGATAGCCCGATCAAAAACATTAACGGGCTGAACACCTTGTTGGAGGGAGGAAACAGCTTCACCTGCATCTCAAGTGAAGTCACTGACCCTGTCTATGCTCCTAACCTCCTGGAAGGTCTTTGTACCATGAGGCAGGACAGTTTCCTCTGCGACCTGACCGTCTCCACAAAGTCAAAGTCCTTTGATGTCCATAAAGTTGTCATTGCCTCCTGCAGTGAGTACATTCAGAATATCCTGAAGAAGGATTCCGCCCTCACGAAGATCGACTTGAATGACCTTTCACCCACAGGCCTGGCCACTGCCATCACATACGCCTACTCAGGTAAACTAACCCTGTCGTTGTACAGCATTGGCAGCACCATTGCAGCAGCCATGTTGTTGAAGATCAACACCCTGGTGAAGATGTGCAGCGACTTCCTCATGCAGGAGCTCAGCGTGGAGAACTGCATGTACGTGGCCAACATTGCCGACACCTACGGCCTCAAAGAAACCAAAGAAGCCGCCCAGAAGTTCATGAGGGGGAACTTTATCGAGTTCTCTGAGATGGAACAGTTCCGGAAGCTCACCTACGAGCAGATCAATGACTTCCTCAGTGATGACTCCCTGCAATTGCCCTCTGAGATTACAGCCTTCCAGATAGCCATGAAGTGGTTGGACTTCGATGGGAAAAGACTGAAATACGCCCCAGATCTTCTGACCAACATTCGCTTTGGCACCATCTCAGCTATGGACCTGGTCAATCATGTCCAGAATGTGCCCAGAATGATGCAGGACCCCGAGTGCCATCGTCTCCTGGTGGACGCCATGAATTACCACCTGTTGCCTTACCAGCAGAACGTTTTGCAGTCCCGCAGAACAAAGGTACGTGGTGGCCTCCGCGTCATGCTGACAGTGGGTGGACGACCAGCTTTGGCGGAAAAATCTCTCAGCAAAGAGGTCCTCTACAGGGATGAGGACGACGTATGGAATAGGCTGACAGAGATGCCAGCCAAGAGCTTCAATCAGTGTGTGGCAGTCCTGGATGGCTTCCTTTATGTTGCTGGTGGCGAAGACCAGAATGATGCCAGGAACCAGGCGAAACATGCTGTCAGCAACTTCTGCAGGTATGATCCTCGATTCAACACCTGGATTCATTTGACCAACATGATCCAGAAGCGCACCCACTTCAGTCTCAACACCTTCAATGGTCTCTTGTTCGCTATTGGAGGTCGTAACTCTGATGGATGCCAAGCTTCATTGGAGTGCTACGTGCCTTCCTCCAACCAATGGCAGATGAAAACCCCCATGGAGATCCCCCGGTGCTGCCACGCCAGCTCTGTCATTGATGGCAAGATCCTTGTTAGTGGTGGTTACATCAACAATGCGTACTCCAGGGCTGTGTGCAGCTATAACCCTTCCACTGATATGTGGCAGGATAAGAACAGTTTGAGCTCCCCTAGAGGCTGGCATTCCACTGCTACAGTCGGAGACCGGGCTTATGTGATTGGTGGCAGCCAGCTGGGTGGTcgtggagagagggtggatgtCTTGGCTGTTGAGTGTTTCAACCCTCACAATGGACAGTGGAGCTACTCTGCCCCGCTAAACACAGGAGTGAGCACTGCTGGTATAGTCAGCATGAATAATAAGATCTATCTCCTTGGAGGCTGGAACGAGATTGAGAAGAGGTACAAGAAATGCATCCAGGTGTATAACCCTGACCTCAATGTATGGACTGAGGATGATGAGTTGCCAGAGGCTACAGTTGGCATCTCATGCTGTGTCGTTACCATACCCACACGCAAAACACGAGAGTCCAGGGCCAGTTCTGTTTCATCTGCACCAGTCAGCATATAGAGTCTGACAGGTTGTTTGATGTAGTCTGCCAGAGGACCAAAAATCCTCGAGCCAGTCCAATTCAGAAAATCCTTTGTGCAGAAAGTGATCATCCCTCTTTGAGTTCAGAAAAAAAACTGATAACCTacaaatgtcacacacacacatctaatttGGAATTGAATCAGATATATTCAAATAGTTTTTTATACGTTTTATTAAGGATGGAATTTCTTCCAAATTAAGGCAAATCATAAAATTGTGATGTGCGACATGAATTCAGGAAGTTGTTTTGTGTTGTGagacaaataaatattttattatcAAGGAAAACATTTCTTTCCTTTTGGGGCCAATTCAGCCGTAATAGTTGAATCAGCCCTACTCTCCATAGACCACAGATTTTATTCCCAATATTAAACTTATTTGGTGTTGGTTTTGGTGTTGTGCTAATAGTAACTGCATTATTTGTACAATACACATAAACATGCCTATATGGTGAACCCTTGTTATGTCACTATCATTACTTTCCAGTGACATAAAGctaaatacactgtatatagtatAATCAACGACTGGACATATGATGATGATGGAAGACCATTGACTTAAATCCTCAtgtacagcagtggaggctgctgaggagaggacagCTCATAAAAATGTCTGGAATCCatgaaatggcatcaaacacatggtaaaccacgagcccgttctccacaattcaggtgccaccaacctcctgtgatatacAGGTATACAACTGTGATTAACATTTAAAGGGACATAAAAAATGTAAACTCATATTCTTGTCCCATATTTAAagggacaaaaaaaatgtaaactcatattcatcctctccagcaccaccccaacatacaacatctgtaaatGATGGCGTGTTTCTCTGTAGATGGAGGAAGACGAGTGTTTCCACAGACATCATCGGTTCCAGCATCCAGTATGTTGATGTTGTGGTGCTGctagagatcatacatttccctTTGAAATCTTCAAGATGTCAATGCAGAAGATAAACTAATTTCTAAACATTCTTTGTTGCTGAAATATGATGATATTGTAGCTTCAAGGAGTAGACGCTGCTggtttcttgtttgtttgttttctttaacacactatacactacagtcatGTGAATTGTATGTAATGTCCTGACTCAGAAGAAGCTGTTGGGAAAATGTTGTTATGATGACATTGGTAATATTTGTTTTGTAAAAAGAGTGAATAGTGGAAAATACAGCTATTAGCCTGAGCTGTTAAGGGTGTGGGCACTCTGCAACAGTGCCTCCTAATTTCCCTGACAGCTCATGATTTATTTTGTTCTTAtattaaacatttttaaaagttg

Function

GO: NA

KEGG:

id description
K10467 KLHL31; kelch-like protein 31

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930444 lncRNA upstream 149780 34414763 ~ 34419287 (+) True G1687735
TU1930439 lncRNA upstream 157345 34411521 ~ 34411722 (+) True G1687732
TU1930438 lncRNA upstream 157657 34411190 ~ 34411410 (+) True G1687731
TU1930437 lncRNA upstream 158045 34410818 ~ 34411022 (+) True G1687730
TU1930401 lncRNA upstream 214311 34350630 ~ 34354756 (+) True hmgcll1
TU1930575 lncRNA downstream 52838 34626718 ~ 34683245 (+) True G1687845
TU1930610 lncRNA downstream 110813 34684693 ~ 34685476 (+) True LOC110499597
TU1931209 lncRNA downstream 168951 34742831 ~ 34743036 (+) True G1688405
TU1931214 lncRNA downstream 172977 34746857 ~ 34747323 (+) True G1688410
TU1931218 lncRNA downstream 176124 34750004 ~ 34750436 (+) True G1688414
XR_005037989.1 mRNA upstream 65401 34499031 ~ 34503666 (+) True LOC118942064
XM_021576477.2 mRNA upstream 189701 34347154 ~ 34379366 (+) False hmgcll1
XM_021576493.2 mRNA downstream 9436 34583316 ~ 34591320 (+) True gclc
XM_036956241.1 mRNA downstream 21077 34594957 ~ 34606103 (+) True elovl5
XM_021576496.2 mRNA downstream 41820 34615700 ~ 34626578 (+) False LOC110499384
XM_021576497.2 mRNA downstream 41820 34615700 ~ 34626578 (+) False LOC110499384
XM_021576498.2 mRNA downstream 41820 34615700 ~ 34626578 (+) False LOC110499384
TU1930380 other upstream 242813 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1383791 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1907419 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 4992509 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 807829 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 807829 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1107487 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1127340 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 1307698 35881578 ~ 35881874 (+) True G1689671

Expression Profile