RNA id: XM_036956245.1


Basic Information

Item Value
RNA id XM_036956245.1
length 2716
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110499384
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34615700 ~ 34626578 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAAAAAAGGCATCTGTTGAATGAAGAGAAAATTCTACTCATGGGAGGAATGCATGAATCTTCGTGAGGTCATATCCTTGAAGAAACTCAACCACGCGAATGTGGTCAAACTCAAGGAGGTTATACGGGAAAATGACCACTTGTACTTTGTGTTTGAATACATGAAGGAGAACTTGTATCAACTAATGAAAGACAGGTCTCGGCTGTTCCCTGAATCTGCTGTGCGAAATATTATGTTCCAGATACTGCAGGGATTAGCTTTTATTCATAAGCATGGATTCTTTCACAGGGATATGAAACCTGAGAATCTTCTGTGCATGGGACCAGAGCTGGTGAAAATAGCTGACTTTGGGCTTGCCCGTGAGATAAGATCTCGGCCACCATACACAGATTATGTTTCAACAAGATGGTACAGAGCTCCAGAGGTGTTGCTGAGGTCCACCTCGTACAGCTCTCCCATAGACCAGTGGGCTGTGGGCTGCATCATGGCAGAGCTTTACACCCTCAGGCCTCTGTTCCCTGGCTCCAGTGAAGTGGACACCATCTTCAAAATCTGCCAAGTCCTGGGAACTCCAATGAAGAATGACTGGCTGGAGGGCTTCCAGTTGTCAGCAGCCATGAATTTCCGCTGGCCCCAGTGTGTCCCCAGTAATCTGAGCAGTCTGATCCCCAACGCCAGTACTGAGGCCATCCAACTGATGAGAGACCTACTCCAGTGGGACCCTAAGAAGAGGCCAGCCTCTGCCCATGCCCTCAGGTACTCCTACTTCTATGTGGGTCAGGCGTTGGGCACTCCTCAGCAGATCCTGGAGCAGGGCAGGCCTCAGCCAGGTCCCCTACCTCCACAGCCACCACAACCATTACAGCAGCCCCTGCAGCAGCTACAACCACTGCTGCTGCTCAAGCCAGTGCCCCCTCCCCAGCCAGCGCCCCCAAATCAGCATTTCAACTCGTCCAGGCCCCTGCAACAGATCCatccagccccagtctcagcccccacCCCAGTTCCATCGTACCAGAGGCACTCAAAGCTGTTGCGAGAGCAGCCCAACCGCATGGTGAAGCAGGAGGAGACTGAGATGGTCCCACAGACCCGCTTAACTTACGTTGTTGACAAGAGCTTGCAGAGCCAGTTGACCCAGGAGGCTGAGAATGCCAACTTCTTAAGCTATCAGACGAAACCTAAGGGTGGAGGACGCCGGCGATGGGGCCATGGCACAGGCCTCCTAAAGGGTGACGAGTGGGATGACTTTGAGGACACTGAGCTGACCTCACTAAGTTTTCTGGGCAAAACAAACTTTCCTACAGAAAAACTAAGAGAGGAGACGTTGAGCAGGTACGGAAATGTTTTGGATTTTAGCAGCCCCAAAGTTAAGGGGCAGGTGACGACAGGTGACGATGCACCTTTGAATCTGAACAAGGCCATGTCCTACCAGGAGCCTTCAAGGACAGCCTCGGCCAAACAGTATTACTTGAAGCAGTCAAGATATCTACCAGGTTTAAGTACTAAAAAGAATATGGCAATAAATTCCAACTACAGTGAAAGCAACCTCTGGGGCAGCAAAATTCCTGTTGGAGGAACACTTCCTAACCGAGGCACTCATGGTTCAAATACTCTTCCAAGTGGATATGTACCGAACTATTACAAAAAAGAGGTTGGCTCTGCCGGCCAAAGAGTGCAACTCGCACCTATAGGGGACTCAACAGCATCAAATTATGCAACCTGGAGGTCGTCTAGCAGAAGTCAGATGGGTGCCTCGTCCTATGTGCCGTCGCCCACCAAGACTACGCCTGGCCTACGGTCTCGCCCCCCAGCACAGGCCATCCATGGGCGCACAGACTGGTCTGCCAAATATGGACACCGCTAGTGGCCTCTTTGGGACACTTGTGTTATTTCAGTACTTCAGATTTGTCTTTTCCCTATAAAAGGAAAAACGTATGTTTTCATATCAAAGTATGTACATGTTATACAGCAATAACCTTGGTTTTGTATTAATCTGTGTCTATATTGTTCAATGTACAActttttcagtgtgtgtgtgtgtgtattatatggATAAATGACCTCTGCAAAATGTTGGTGTCGTCACATTTTGTTCAGTGACAAATTCCATACCATTTTTTTGTTTATTGCGTAGCATAACTTTCTCAGCCCCTTCTTAATGTTTGTTCCATAGATTTTGTAAAACGGCCCCATGACGTCCCCACGATCCAGTCTTTATGCATTTTATATTGCAAATATCACTGTGATATTTTGGCCAACACTGTTTTTCTGTTGCCAAtttgtctttttattttttttacatgtttttctTGGTGCTTTCTTTCATGAGACATTCtggaataaaggaaacacttgtaTCTTGATCATTTGTATAttttattcattgttttttttctctaaatCAATAACTCTGTGCTTTATTTTAATCAGAATTGATGACACAATTGGCTTTAGTGTTATCTTTTTTTGTAATGAATTGTGTGGCtctcaaaaaaaatgtattgagaGATTGTACGTTGACTTGGTTTATCTGCTGGGCCAAATTGTAAAAACATGTATAACTGCCAGTTACCAAATGCCATTGCTAACATTTTATTTATGTGGTATTGTAATGACCATTTCATTaacaacagtttttttttgtaatGGTCATAATCCTTTGACATAATTCTGTTTTGATTTGTAATCAATAAActcattggtgtgtgtgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930444 lncRNA upstream 197869 34414763 ~ 34419287 (+) True G1687735
TU1930439 lncRNA upstream 205434 34411521 ~ 34411722 (+) True G1687732
TU1930438 lncRNA upstream 205746 34411190 ~ 34411410 (+) True G1687731
TU1930437 lncRNA upstream 206134 34410818 ~ 34411022 (+) True G1687730
TU1930401 lncRNA upstream 262400 34350630 ~ 34354756 (+) True hmgcll1
TU1930575 lncRNA downstream 140 34626718 ~ 34683245 (+) True G1687845
TU1930610 lncRNA downstream 58115 34684693 ~ 34685476 (+) True LOC110499597
TU1931209 lncRNA downstream 116253 34742831 ~ 34743036 (+) True G1688405
TU1931214 lncRNA downstream 120279 34746857 ~ 34747323 (+) True G1688410
TU1931218 lncRNA downstream 123426 34750004 ~ 34750436 (+) True G1688414
XM_036956241.1 mRNA upstream 11053 34594957 ~ 34606103 (+) True elovl5
XM_021576493.2 mRNA upstream 25836 34583316 ~ 34591320 (+) True gclc
XM_021576492.2 mRNA upstream 43276 34569055 ~ 34573880 (+) False klhl31
XM_021576491.2 mRNA upstream 43276 34569067 ~ 34573880 (+) True klhl31
XR_005037989.1 mRNA upstream 113490 34499031 ~ 34503666 (+) True LOC118942064
XM_021576502.2 mRNA downstream 641 34627219 ~ 34630262 (+) False LOC110499387
XM_021576503.2 mRNA downstream 647 34627225 ~ 34630262 (+) True LOC110499387
XM_021576506.2 mRNA downstream 29465 34656043 ~ 34671430 (+) True LOC110499390
XR_002469988.2 mRNA downstream 58036 34684614 ~ 34685478 (+) False LOC110499597
XM_021576507.2 mRNA downstream 140191 34766769 ~ 35179392 (+) True LOC110499391
TU1930380 other upstream 290902 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1431880 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1955508 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 5040598 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 755131 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 755131 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1054789 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1074642 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 1255000 35881578 ~ 35881874 (+) True G1689671

Expression Profile