RNA id: XM_021576503.2


Basic Information

Item Value
RNA id XM_021576503.2
length 1675
RNA type mRNA
GC content 0.39
exon number 7
gene id LOC110499387
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 34627219 ~ 34630262 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACATGCAAATCTCCAACTCAACTCTCATGTAGGTCATATGACACAGTGTTTGAGGTTCACTTCTTCGTTAGAAGCGTTTCGTAACTTTGTAAATTAACTTATTCGGagttcacacacacataacagTAAACTTCAATTTCGCCATGTCTGGAAAAGTGGTGTTGACTTATTTCAATGGGAGGGGGAGAATGGAGTCAATTCGATGGCTTTTAGCAGTTGCTGGAGTTGAGTTTGAAGAAGTGAATATAACAAAGCGTCAGGAATATGTAAAACTGTTGAGTGatggAGCACTCATGTTTGAGCAGGTTCCCTTGGTGGAAATGGATGGAATGAAGCTGGTTCAAACCAAGGCTATCCTGAACTACATAGCAGGGAAATACAATCTCTATGGGAAAGACTTAAAAGAACGAGTCATGATTGACATGTATGCTGAGGGCGTGCAGGACTTGATGCAAATGATGATGGCGTTGCCCTTCATGCCGCCTGACACCAAGGAAACTAAactggaggagatagagaggaaagCAACAAGCCGTTACCTCCCTGTGTTCGAGAAGGCGCTAATTGGCTCCCAGTACCTGGTGGGTTTTCAGTTGAGCTGTGCTGATGTCCAGCTACTTGAAACCACCTTGATGTTGGAGGAGAAATTTCCAACAATTCTTTCCAAATTCCCTGTTGTTAAGGCTTTTCAAGGGAAGATGAAAAGCCTACCAGCCATTCACAAGTTCCTGCAGCCAGGCAGCAAGAGGAAGCCTCAATCAGATGATGTATATGTAAAGACTGTGTGTGAGGTGTTAGACTTCAAGCTCTGATTCTCATCTAAACATCAAGTAAAATTGACTTTAAAGAGTTGaagctaatataatatattacctgtACATGGTTCCATATTGTCATTCCAAGTCATAATTTCTTGTAACATGTTGTGGAGAAATTATGACATAAGCTTATGAATTGTTTAACCCTGGCAATATGAGTGTGGTGTATTGTTTGCAAAATTGTTTTATAACTAGTTCCCTTTGTGCTCACAAGAAGTTTCCGACAATACCCAAGAGAAAACCTTGATTTACTTGGGTGAACGCCCAGAAATAGCCTCTGAGAACTTTATCAGGAGCAGGTGTCTTGTTACACATTCTCTTTTGTACCCAAAACTCCTCGTGCTGAGGATGAATCGTGTCTGTGTGAGTTGTGTGTATCCTAGTATAAAAGGTGCCTGGGGACAGTCCCCTCGTAGAGCTTCTGACCAACCTGTACTGAGTGTGCAGAGTTTGTTGTAACCTTTCCACTGGCGTGACTCTTAATAAAGTTAATTTACTAATTGACTTGAGTCCTTGATGGTAATTTCTATTACAATGTGTAAAGGACAATTGTTTAACGAGCACAAGTATTTAATGTTTTCCAATAATGTGCACAAAGAAAAAGGCTGTTGAACAAACAAAATATTTTCTGTAACTAAACCCTCTGTGTCTGTTGTGAGTTTTCCATCATTGATAGAGGATATTTACTGTCATGCAACTGAATATGATTATGTAAAACTACTGAAATGTTAGTAGTCAAACCTGCAAtactataaaatgtattttgtacgAGTAGTAAAtgccattgtatttctgttcccATATCCATTGAAAAAATCATAGTGTGCTTATAACCAGTAGTAAATTTAATTGTTCAA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0004364 glutathione transferase activity molecular_function

KEGG:

id description
K00799 GST, gst; glutathione S-transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1930444 lncRNA upstream 207938 34414763 ~ 34419287 (+) True G1687735
TU1930439 lncRNA upstream 215503 34411521 ~ 34411722 (+) True G1687732
TU1930438 lncRNA upstream 215815 34411190 ~ 34411410 (+) True G1687731
TU1930437 lncRNA upstream 216203 34410818 ~ 34411022 (+) True G1687730
TU1930401 lncRNA upstream 272469 34350630 ~ 34354756 (+) True hmgcll1
TU1930610 lncRNA downstream 54431 34684693 ~ 34685476 (+) True LOC110499597
TU1931209 lncRNA downstream 112569 34742831 ~ 34743036 (+) True G1688405
TU1931214 lncRNA downstream 116595 34746857 ~ 34747323 (+) True G1688410
TU1931218 lncRNA downstream 119742 34750004 ~ 34750436 (+) True G1688414
TU1931222 lncRNA downstream 122180 34752442 ~ 34752902 (+) True G1688418
XM_021576499.2 mRNA upstream 647 34615700 ~ 34626578 (+) False LOC110499384
XM_021576506.2 mRNA downstream 25781 34656043 ~ 34671430 (+) True LOC110499390
XR_002469988.2 mRNA downstream 54352 34684614 ~ 34685478 (+) False LOC110499597
XM_021576507.2 mRNA downstream 136507 34766769 ~ 35179392 (+) True LOC110499391
XM_021576511.2 mRNA downstream 682349 35312611 ~ 35323282 (+) False LOC110499393
XM_021576512.2 mRNA downstream 682387 35312649 ~ 35323282 (+) False LOC110499393
TU1930380 other upstream 300971 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 1441949 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 1965577 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 5050667 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 751447 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 751447 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 1051105 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 1070958 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 1251316 35881578 ~ 35881874 (+) True G1689671

Expression Profile