RNA id: XM_021576510.2


Basic Information

Item Value
RNA id XM_021576510.2
length 2123
RNA type mRNA
GC content 0.38
exon number 10
gene id LOC110499393
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35312611 ~ 35323282 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACTGCCTAAGTAAGacatcttcatttatccaccataTTTTCTACAACCAGACGTCGAATCGTAGTGGCTATCTAACTTTAAACCATAAGTGATACCAGTGAGATGTCATATTGCTAATCtataaaacaatataaatatTTCCTCATCTAAATGGTCTTGGACAAACTTCTAGTTCTGTATACGCCAGGTTACTGTAGCGGGGTTTTACATCGATCCAcaagaacaaaataacaaaacacagCGTAAACATGAAATCTTTGGCGCTTGTTGTCCTGCTGTGCCTTGGCTGCGGTCTGATGTCTTCCTCATTCGTACTCGCGTCGCCGCATATGTGGAGTAAGTTGATCCTGACTCAACACTGGCCAAGCACATTTTGCAGTATGGAACACTGTGATCCCAAATTTGACTACTGGACTTTGCATGGACTGTGGCCAGATAAAGGCCAGGAATGCAATTCATCTTGGCACTTCAATGTAACTCTAATCCAGGACCTACTTCCAGATATGCAGAAGTGGTGGCCGGATCTTATAACTCCAGCATCCTCTGAATTCTGGCAATATGAATGGCAAAAACATGGAACGTGTGCTGCAAAAGCAGAGTCCCTAAACAGTCAACACAAATACTTTGGCAAAGCCCTGGAGCTGTATCACACGTTAGACCTTGATGGAGTGATGAAGAAATTTAACATTGTGCCCTCGGAGACGTACTACACTTTTGACCACATCGAAGGAATCATTCTCAACTTCTACAGTGTGAAACCAAAGATTCAGTGTATTCACCCAAAGGGTGGGAAGGTGCAAATCTTGGGCCAGATCGAGATCTGCTTCAACTCAGACTTCCAACTTGCCAACTGTGAGCATTCTGAGACAGACACTCTGAGACTAATTGACTTCCTCAATGTTAAGGGTACAGAGTTTAGTGTATGTGACCATGCCACACCTGTCTACTACCCTCCCCTTAAGGGGAAGCCATCAATGTAGTGGCTAGTGAGGTCTGGTTACTCTATAGTCAATTATATCTCACATGGAACACACTCTTCGAAataagggttcttcggctgtctcataggagaaacctttttggttccctTCCTcggtagaaagggttctacatggaactcaaaagggttctttctacctgcaaccaaaaatagttatttaaagggttctactatggggacagctgaagaaccctttaaggttctagatagcacctttttttcctgAGAGTGTAGATACAAGGTTCTACTAAGTGTGAGTTAGCTCAGAAATACTATTCTAAAGTACTAAAAACACAAGTGTTTCCAAATGAATTTGTCTACAACTATTTTCATGTGTTCTGCTTGATTCTTAGAAGCAGGTTGATCATGTTTTAACTCAGGGAATAAATCGGCTTTTAATGATAACACTCCTGAAGGCCTATACTTCCTATATAATGTTTTATAAATCATTTATATGCAAATGGCATACTAAGAGTTATATAAGGTCCTTAAATCTTGTGCTTTGCCAAATGTGTCatacaaatatatttaaaataaaattgtCACATACAACAAAtaggtacagtgaaatgtgttgttttacagggttagCCATAGTTAGATATTTCACCTTGTCGCTTCAggtatttgaaccagcgacctttctgttactggcccaacgctctaactgatCATAATAACCCTAATGCCACCAGTAAAATAGTATGAAATTtgcttttaaattattatttaaattgtttaaagtaTGGTCCTACTTTTTGTCAAACAAAATCTAAAGTTTAATGCACAGTTTATGAAGAAGTCTGTTCACTGCCTCCATTACTCTTGATATATGTTTTGATGTTAAAAGTGTTGAGTAATTAAGATtgtgtatggtggtggttaaaaCGCATTGATTTACATTAGTAATGCCATCTCCATAATTTGATGGAATGATGATCCTGATTTAATCAGATATACTTATTGTATCTGAAACTGATGTTGTTTCTGCTGTTAAGTTAGTTAGATTTAATTTCAGTTGTGGGATACGCTTTGGTTTTAAATGGTGGCTTTGTTTGATATGGTTCCGATCCTCTGTAATTTTTTACTGACAATGAATTAAATACATGTTTCTATTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932029 lncRNA upstream 3751 35307182 ~ 35308934 (+) True G1689183
TU1931992 lncRNA upstream 40196 35272246 ~ 35272489 (+) True G1689152
TU1931972 lncRNA upstream 51744 35260714 ~ 35260941 (+) True G1689132
TU1931964 lncRNA upstream 57437 35254999 ~ 35255248 (+) True G1689124
TU1931955 lncRNA upstream 63543 35248908 ~ 35249142 (+) True G1689115
TU1932038 lncRNA downstream 7332 35330614 ~ 35330888 (+) True G1689192
TU1932020 lncRNA downstream 52318 35375600 ~ 35378074 (+) True G1689174
TU1932016 lncRNA downstream 58427 35381709 ~ 35384566 (+) False LOC110499396
TU1932018 lncRNA downstream 59253 35382535 ~ 35384566 (+) True LOC110499396
TU1932060 lncRNA downstream 62983 35386265 ~ 35386597 (+) True G1689214
XM_021576507.2 mRNA upstream 133293 34766769 ~ 35179392 (+) True LOC110499391
XR_002469988.2 mRNA upstream 627207 34684614 ~ 34685478 (+) False LOC110499597
XM_021576506.2 mRNA upstream 641255 34656043 ~ 34671430 (+) True LOC110499390
XM_021576502.2 mRNA upstream 682423 34627219 ~ 34630262 (+) False LOC110499387
XM_021576514.2 mRNA downstream 15167 35338449 ~ 35374027 (+) True LOC110499394
XM_021576516.2 mRNA downstream 58327 35381609 ~ 35384567 (+) False LOC110499396
XM_021576521.2 mRNA downstream 86957 35410239 ~ 35417932 (+) False LOC110499398
XM_021576520.2 mRNA downstream 87591 35410873 ~ 35417733 (+) True LOC110499398
XM_021576525.2 mRNA downstream 115698 35438980 ~ 35446537 (+) False LOC110499400
TU1930380 other upstream 986431 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2127409 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2651037 32654354 ~ 32661648 (+) True G1686317
TU1924589 other upstream 5736127 29572435 ~ 29576558 (+) False LOC110499316
TU1932015 other downstream 58427 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other downstream 58427 35381709 ~ 35384566 (+) False LOC110499396
TU1932215 other downstream 358085 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 377938 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 558296 35881578 ~ 35881874 (+) True G1689671

Expression Profile