RNA id: XM_021576528.2


Basic Information

Item Value
RNA id XM_021576528.2
length 1440
RNA type mRNA
GC content 0.45
exon number 9
gene id LOC110499402
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35446811 ~ 35459745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAGGAAACCTGGTTACCTGTCAATGTGGGCACCTGTGGTTTAAGTAAACCTGTCAGTGCGAGCACACAAGAGGTTTGAGGATTCCATGCACTGTGCACTTTTGTCAGGTGTGAGCTAAGGCAGACTGCAACCCTAGGGTCATTAGAAGATGCAACAAGGTCGTCTAAGACTGCGACCCTGGCTTGAGAAGCAGATACAGTCAGGGAAATACCCAGGTGTCACCTGGCTTGATGAGACAGCTCAAGTTTTCCAGATTCCTTGGAAGCATGCGGCTCGACATGGTTGGAATATAGACAAGGACGCCACTTTGTTCCGAAACTGGGCAATGCACACAGGCAGATACAAACCTGGGAAAGACGAACCTGATCCTAAGACCTGGAAAGCCAACTTCCGATGTGCCCTGAACACTCTACCCGATGTGAAAGAGCTACAGGGCAAGAGCATCAAGAAGGGCAGTAATGCCTCCAGGGTTTACATGATGCTGCCTGTTGTTAACCGTAACGAACGAAGAAAAGGACCTCAGAAGTCAGACGTCGATATAAAACATAGTCCGATCTCCCTCTCAGAAAATGAGGCACGTTCTTGTGCTCCACTGGATGGGTTTGCAGAGGTTTTCCTGACGTATAGAGGTGGACAGACCAGTCACAACCCTGCTATGTTTCATGTCGAGGACAACTACCCTCCCAACAACGAGGAAAGATCACCAGAACAACCATACTCTCAGcagtcttccttcacacctgaaGCACATAAAAACTCTGATGCTAATGAGCAAGCAGACGCTGTATTCAAGATAGTTGATCACCTAAAACACTTGGAGCACTGGAGCCAGTCTAATGACAACAGAAGCTGGGTGGACAGTTACTGTGAGGACATGGATTACTTGGGGTATCCCATGGAGACTGACTGCTACACTTACAGTGCACAGCAAATACCATTTCTATAAGACGAGTGGGAGCAACATGCATCCAACAGAATGCCAAGCTAAAATCCCTGAAAAAGGAGGATATACCACATTCCAAGCCATGCTGGCACAAGCTCTCTAAAATTCTGTATTGTGATGGACTGCAAGACGGCGACCAAGGGTCtgagcacacatacagtacattaaaaACTATTAAGTGCTACACCTTCACATTACAGTGACAGTCTACTTGTTCAGATTAGAATGACTGAGTTCTTTTAAATGTTTGCTTTTTATTGAACTTAAAATTGACACAATAGGCCTACATGTGGTTTACGTTATAACTAAATTTCTTAAATTGAGAGTTTTAGCATAGCATCTCAGGAAATACCCTTCAAGATTGAGATGgcttaggatgagttggaccagagtgaaggaaaaacatcaacagtgctcagcatatgtgggaactcccaagaatgttgaaaaagcattccttgtgaagctggttgagagaatgccaatagtgtgcaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932287 lncRNA downstream 5167 35439246 ~ 35441644 (-) False G1689414
TU1932288 lncRNA downstream 5167 35439246 ~ 35441644 (-) False G1689414
TU1932289 lncRNA downstream 5167 35439246 ~ 35441644 (-) True G1689414
TU1932319 lncRNA downstream 20372 35426216 ~ 35426439 (-) True G1689443
TU1932318 lncRNA downstream 21473 35425107 ~ 35425338 (-) True G1689442
TU1932352 lncRNA upstream 32170 35491915 ~ 35493696 (-) True G1689473
TU1932397 lncRNA upstream 103855 35563600 ~ 35563891 (-) True G1689511
TU1932436 lncRNA upstream 147818 35607563 ~ 35608098 (-) True G1689546
TU1932424 lncRNA upstream 175051 35634796 ~ 35636597 (-) True G1689536
TU1932447 lncRNA upstream 184977 35644722 ~ 35646487 (-) True G1689557
XM_021576524.2 mRNA downstream 14361 35429125 ~ 35432450 (-) True LOC110499399
XM_021576518.2 mRNA downstream 41200 35387849 ~ 35405611 (-) False LOC110499397
XM_021576519.2 mRNA downstream 41200 35387849 ~ 35405611 (-) True LOC110499397
XM_036956247.1 mRNA downstream 136622 35273214 ~ 35310189 (-) True LOC110499392
XM_036956248.1 mRNA downstream 136865 35273214 ~ 35309946 (-) False LOC110499392
XM_021576538.2 mRNA upstream 101505 35561250 ~ 35567621 (-) False LOC110499408
XM_021576539.2 mRNA upstream 102625 35562370 ~ 35567621 (-) True LOC110499408
XM_036956265.1 mRNA upstream 359284 35819029 ~ 35826024 (-) True LOC110499415
XM_021576549.2 mRNA upstream 404906 35864651 ~ 35951415 (-) False LOC110499416
XM_021576556.2 mRNA upstream 491828 35951573 ~ 35979344 (-) False LOC110499419
TU1931971 other downstream 186603 35259886 ~ 35260208 (-) True G1689131
TU1931970 other downstream 186993 35258989 ~ 35259818 (-) True G1689130
TU1929638 other downstream 1902573 33543686 ~ 33544238 (-) True G1687007
TU1929645 other downstream 1912535 33533673 ~ 33534276 (-) True LOC110499358
TU1929489 other downstream 2368784 33077810 ~ 33078027 (-) True G1686887
TU1932340 other upstream 18369 35478114 ~ 35480057 (-) True G1689461
TU1932446 other upstream 183623 35643368 ~ 35643777 (-) True G1689556
TU1932874 other upstream 405955 35865700 ~ 35866784 (-) True LOC110499416
TU1932968 other upstream 660762 36120507 ~ 36125398 (-) False LOC110499427
TU1932966 other upstream 660887 36120632 ~ 36125398 (-) False LOC110499427

Expression Profile