RNA id: XM_036956253.1


Basic Information

Item Value
RNA id XM_036956253.1
length 3065
RNA type mRNA
GC content 0.48
exon number 15
gene id LOC110499406
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35500779 ~ 35508659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAGCTGTTAGTATAGCTGAAATTGACATATTTTTGTAATTTAGTGCCAAGATGGCTGCGAGGTGGCTTCAATACAGCACCCCCTGTCTGTCTTCCAGGGTTATACACAATATTGGAAGATCATGTATCATTATGCTTGTTTACAATAAGCTGCACTGAGGTCACAAGGCAATCACGTTTACATGAAGACACCATGGAACTGGCACGAGATATGGGTGGGGAAACGTATCTCAATGCAGAGATGGAATAGGCCATTGTACCTTTATCCACACTATGATCAAGAAGATCGAAATACTGCCAGTTTCCCAGAAACAACCCTTTTTGCCCTCATGCTAGTTAGCAGTAGCCACCGGGGCATTTTGGAATGGCCGTGTCAGCCAACCAACCCATTTGTTCAATGCAACGTGCCATTCCATAATGGCTGCTGCTAACTAGCATGAGGATGAAAAGGGCAGTTGTCCAGGAAAACTAGCAGTACTTCAATCTTCTTGATGGAGCAGTGTGGATAAAGATACAATTTGGAGTTCAGTGGCATATCCCATGCCTGCATTGAGGTGAACTTCTAAAAATACTGAATAAGTTCTACAAGCGGAATGAGATGCAAAAAATTGCTGCGGATCAAGGTCTCGATGCTCGTCTCTTTCACCAAGCCTTCATCAGCTTTCGGAAGTATGTGCTGGAAATCTCTACACTCAGTGCAGACCTTCATATCATCCTCAATGATATATGCTGTGGAGCAGGCCACATAGATGACCTCTATCCTTACTTCATGAGACATGCAAAGCAGATTTTCCCCATGCTGGACTGCATGGAGGATCTACGAAAAATCAGTGATCTGCGTGTACCAGCTAATTGGTACCCAGAGGCTAGAGCCATCCAGAGGAAGGTGATATTCCATGCTGGTCCGACCAACAGTGGAAAGACCCATCATGCAATTCAGAGATACCTGGCTGCCAAGTCTGGTGTCTACTGTGGACCGCTAAAGCTGTTGGCCCACGAGATCTTTGAAAAGAGCAACACTGCTGGCGTGCCATGTGATTTggtgacaggagaagagagaacatTTGTGGATGCGGAGGGGGGACAAGCTGAGCATGTGGCCTGTACTATCGAGATGTGCAGTGTCACAACTCCATATGAAGTAGCGGTTATTGATGAGATCcagatgattagggacatatcGAGGGGATGGGCTTGGACCAGGGCTCTTCTCGGTTTGTGTGCTGAGGAGATCCATGTGTGCGGAGAGCCTGCTGTGATTAACTTTGTCACAGAGCTCATGTACACAACTGGTGAAGAGGTGGAGGTTCGTAACTACAAGAGGCTCAGTCCGTGCTCAATTCTGGACCGTGCTGTGGAGTCTCTGGATAACCTGAGACCAGGCGACTGTGTTGTCTGCTTCAGCAAAAACGATATTTACTCCATCAGTAGGCAGATCGAGAGCCGAGGCCTGGAGTGTGCCGTCATCTACGGAAGCCTTCCACCCGGGACCAAGCTATCTCAAGCAAAGAAGTTCAATGACCCAGAGGACCCATGTAAGATCCTGGTTGCAACAGATGCCATCGGGATGGGACTTAACCTGAGTATCAAGAGAATCATCTTCAACTCCTTGGTGAAACCCAACATCAATGAGAAGGGTGAGAAGGAGCTAAACACCATCTCCACGTCTCAGGCTCTCCAGATCGCTGGGCGGGCCGGACGCTTCAGCTCCATCTTTAAAGAGGGCGAGGTCACCACCATGCACCGCGATGACCTGCCTATCCTCAAGGAGATACTCAGCAGGACCGTCCACGCCATCGAGATAGCTGGGCTGCACCCTACAGCAGAGCAGATTGAAATGTTTGCCTACCACTTACCTGATGCCACCTTGTCCAATCTGATAGATATATTTGTGAGCCTCTCGCAAGTTGATGGTATGTACTTTGTGTGCAACATTGATGACTTCAAGTTCCTGGCTGACATGATCCAGCACATTCCCCTCAACCTGCGCTCTCGATATGTGTTCTGCACTGCGCCCATCAACAAGAAGCAGCCCTTTGTGTGCACCTCCTTCCTGAAGTTTGCCAGACAGTTCAGCAGAGATGAGCCTCTGACCTTTGACTGGGTGTGTCGGCTCGTCAGCTGGCCCTTGGTCCCACCCAAGAACATCAAGGACCTGGTGCACCTGGAGGCTGTCCATGATGTGCTAGACCTCTACCTCTGGCTCAGCTACCGCTTCATGGACATGTTCCCGGATGCCAATCATGTCCGGGAGATCCAGCAGGAGCTGGACAGCATCATTCAGTTGGGCGTGCGCAACATCACACGACTTATCCGAGCAACGGAGACCAGCGCCACCCCTGGGATAGACCCCCTCTCCAGCCAGAGGAGGTCGGGGCCCAGCCCAGTATCCCCAAGGAGGGTTCGAGGAGCTCCCAAGGCCCAGGACAGTGGAGTAGAGGCTGGGCAGCTGGACAAGTCCCTAGGCTCCCGCCTAGTGCAGGAGGGCTTACTGACTCCCGACCTCCTAAAGCAATTGCAGAAGGAGTGGTCCAAGGAGCACCGTCAAGAGGAAGTAGGAGTCAAACTGGTTGCGGAAACTTTGAATAATAAAATTAAAGGGAGGAAGAAAAAGTGACCTGTTTCCTGTTATTTTGACCGGACTTCATTCCAGGCGGTATTATGCAGCTGTTGACCAATTGGACTGTGTGTGTCCCAGCTCCTGTCTATCACTGTTCAAAAACAGTCATCTTGTGAGCCAAAGGGTAAATAAATATGTTATTACAAAGTAATTTTGTAgtcttattttatttttatcacTTGAAAAGTAAAATCGTTGACTGCATCACGTAGATAGTCCGTCTCATGCAGCAAGCAATGACTAATTTTTACACTGAGGCATCATTCCTTGAGCAATTTGTGCCCATCCTATGCTTGGGCTAGACTACGGTAACAAACTTAAATGTTATATGAGACATCGTCTCTTGCACTTTACACCACTAATTATATGCTCCTATCTATGTATGATTCGAAACTGACAGTATAAGTGATGTGATTGATAAAATAAAAGTACAATTTCTTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932067 lncRNA upstream 81065 35418048 ~ 35420255 (+) True G1689218
TU1932087 lncRNA upstream 84594 35415812 ~ 35416726 (+) True G1689237
TU1932078 lncRNA upstream 95706 35400704 ~ 35405614 (+) True G1689229
TU1932061 lncRNA upstream 113484 35387536 ~ 35387836 (+) True G1689215
TU1932060 lncRNA upstream 114723 35386265 ~ 35386597 (+) True G1689214
TU1932168 lncRNA downstream 41986 35550645 ~ 35551201 (+) True G1689303
TU1932205 lncRNA downstream 108791 35617450 ~ 35617666 (+) True G1689337
TU1932210 lncRNA downstream 134258 35642917 ~ 35643832 (+) True G1689342
TU1932164 lncRNA downstream 136145 35644804 ~ 35645180 (+) True G1689299
TU1932160 lncRNA downstream 136603 35645262 ~ 35645588 (+) True G1689295
XM_021576533.2 mRNA upstream 2846 35492614 ~ 35498474 (+) True LOC110499405
XM_036956252.1 mRNA upstream 22221 35473620 ~ 35479099 (+) True LOC110499404
XM_021576531.2 mRNA upstream 32380 35465635 ~ 35468940 (+) True kifbp
XM_036956250.1 mRNA upstream 54779 35438980 ~ 35446541 (+) True LOC110499400
XM_021576525.2 mRNA upstream 54783 35438980 ~ 35446537 (+) False LOC110499400
XM_021576673.2 mRNA downstream 2568 35511227 ~ 35522297 (+) True LOC110499539
XM_036956254.1 mRNA downstream 28273 35536932 ~ 35558759 (+) False LOC110499407
XM_036956255.1 mRNA downstream 38065 35546724 ~ 35557467 (+) True LOC110499407
XM_036956257.1 mRNA downstream 62595 35571254 ~ 35605236 (+) False LOC110499410
XM_021576540.2 mRNA downstream 62597 35571256 ~ 35605240 (+) True LOC110499410
TU1932015 other upstream 116754 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 116754 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1175066 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2316044 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2839672 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 172708 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 192561 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 372919 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 611957 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 756001 36264660 ~ 36264981 (+) False G1690092

Expression Profile