RNA id: XM_036956254.1


Basic Information

Item Value
RNA id XM_036956254.1
length 4049
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC110499407
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35536932 ~ 35558759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATCGCAGCACAGCTTCTGGCCTACTTCTTCACTGAGTTGAAGGATGATAAAGTCAAAAAGATCGATAAGTACCTGTACGCCATGCGTTTCTCCGACGAGACGCTGTTGGACATCATGAAGCGCTTCAGGATGGAGCTGGGAAATGGGCTGGGCCAGGACACCAACCCCACAGCAACAGTCAAGATGCTGCCCACCTTCGTCAGGTCCATTCCCGACGGTTCAGAGAAGGGGGACTTCATTGCTCTGGATCTGGGAGGCTCGGCTTTCCGCATCCTGCGAGTAAAGGTGTCCCATGAGAAGAAGCAGACGGTTCAGATGGAGAGCCAGGTCTATGACACTCCTGAGGACATTATCCATGGCAGCGGTACTCAGCTGTTCGACCATGTTGCAGAGTGCCTGGGTGACTTCATGGAGAAGCAGAATATCAAGGACAAGAAGCTTCCAGTTGGCTTCACCTTTTCATTTCCCTGTGCACAAACCAAACTAAATGAGAGTTTTTTGCTCAATTGGACTAAACGCTTTAAAGCCAGTGGAGTTGAGGGAATGGACGTTGTGGCACTTCTGAATAAGGCCATCAAAAAGCGTGGGGACTATGACGCAGACATCATGGCAGTGGTCAATGACACAGTTGGAACCATGATGACCTGTGGCTTTGATGACCAGCGGTGTGAAGTTGGTATCATCATAGGCACAGGTACTAATGCTTGTTACATGGAGGAGCTGAGGCACATTGACCTGGTGGAGGGAGACGAGGGCAGGATGTGCATCAACACAGAGTGGGGAGCCTTCGGGGACAATGGGATGCTGGAGGACATTCGCACAGAGTTTGACAGAGAGATTGACCGGGGATCTCTGAATCCAGGAAAACAGCTGTTTGAGAAGATGGTCAGTGGGATGTACATGGGCGAACTTGTGCGACTCATCCTGGTCAAGATGGCCAAAGAAGAATTTTTGTTTGAGGGTCGGATAACCCCTGAACTTCTTACCAAAGGGACATTTGAAACAAAACATGTTTCTGCCATTGAAAAGAGTAAAGAAGGCCTTACCAAAGCCAAGGAGATCCTAGGTCGCCTAGGTGTAGAACCATCTGCAGATGACTGCATCGCCGTGCAGCACGTATGCACCATAGTCTCCCATAGATCAGCCAACCTCATTGCTGCCACTCTGGGTGGCATCCTCTCcaggctaaaggacaacaaagggAATCCTCGTCTTCGCACTACTGTGGGAATCGACGGCTCTCTCTACAAGATGCACCCGCAATATGCCCGGCGTCTCCACAAAACCGTCCGCCGCCTAGTTCCCGAGTCAGATGTCCGCTTCCTGCTCTCAGAGAGTGGCAGCTCCAAGGGCGCTGCCATGGTGACCGCCGTGGCCTACCGGCTGGCCGACCAGCGTCGTCAGATCACAGAGACCCTGGATGAGTTCAGACTGACCAATGACCAGCTGCTGGAGGTAAAGAAGAGGATGAGAACGGAGATCCAGAACGGCCTGGGGAAAAAGACCCATGACAGCGCCACCGTCAAGATGTGGCCCACATATGTACGCAGCACACCGGATGGATCAGAAAAGGGTGATTTCTTGGCTTTGGATTTAGGAGGGACAAACTTTAGAGTGCTGTTAGTGAAGATCCGTAGTGGCAAGCGACGGACAGTAGAGATGCATAACAAAATATATGCCATTCCTATGGAGGTGATGCAGGGGACCGGAGAGGAGctCTTTGACCACATTGTCCAGTGCATATCTGACTTCCTGGACTACATGGGCATGAAGAACACCCGCCTGCCTCTGGGCTTCACCTTCTCGTTCCCGTGTAGACAAACCAGCCTGGATGCGGGCATCCTGGTCACCTGGACCAAAGGATTCAAGGCCACTGACTGTGAAGGGGAGAATGTTGTGGGGCTTCTCAGAGAGGGGATTAAACGGAGAGAGGAGTTTGACTTGGACGTAGTGGCAGTAGTGAACGACACGGTTGGGACCATGATGACATGTGCATATGAAGAAGCCACCTGTGAGGTTGGCCTAATTGCAGGAACTGGCAGCAACGCCTGTTACATGGAGGAGATGAGGAACATTGAGACGGTGGAGGGAGATGTGGGGAGGATGTGTGTCAACATGGAGTGGGGCGCCTTCGGGGACAACGGCTGTCTGGATGACATCAGGACAGAATATGACAGAGCTGTGGATGACTTATCACTCAACCCTGGCAAGCAGAGGTATGAGAAGATGTGCAGCGGTATGTATCTAGGGGAGATTGTGCGAAACATCCTGATCGACTTGACGAAGCGTGGCTTCCTCTTCAGAGGGCAGATATCAGAGACCCTAAAGACCAGAGGCATTTTCGAAACTAAATTCCTCTCCCAGATTGAAAGTGACCGCTTGGCGCTACTGCAGGTGAGGTCCATTCTGCAGCAGCTAGGTCTGGACAGCACATGTGATGACAGTATCATTGTCAAGGAGGTGTGTGGTACAGTGTCTCACCGGGcggcccagctctgtggagctgGAATGGCCGCCGTCGTCGACAAAATACGAGAAAACCGCGGGCTGGACCAAATGGACATCACCGTGGGGGTGGACGGAACGCTCTACAAGCTTCATCCACACTTCTCGGGGATCATGCACCAGACAGTGAAAGAGTTGGCCCCTAAGTGCAATGTCAACTTCTTTCTCTCTGAGGACGGGAGCGGCAAGGGTGCAGCCCTCATCACCGCTGTGGGATGTCGCATGCGTGAGCAGGAGGAGAAGAGCTGAGTCTGTTTGGCCTGCCCCCCTCCTCGTCCTCTACCACTTCCTCGTCTTCCTCTCCTTACACATGGTTAGAGAGGTATGCTACAGTATGTGATTTTATGATTTGATTTAACGATGACGCTGCTCAAGTGTCTGCCGCTCTGCTTCAGACACAACCCGTTGTGGGCACCAATGACGCAACATTACATTCTTCTAAACCATTTAAATCTTACACCTGCTATTTACCAGCCCGTTTCCTGTTTGTGTTGGTCTGCTGTACCGGATGGAAGGAACTGGGCTCAGTCTTATTATTGTGATGTTAGAACACTGCTGTAGGTATTTGGGGGCTAATGTAAGAGAAGAAAGGGAATATTTCTGCTTTGAATGTCTTGTACCTTGCCTAGGTATGTTAagtgttatttattttatagtgTGGATGTTTTGACATAATGAGTGATAGGGGATAATCATTGTAAGGTTAAAGATCTCTATTGCAAAAATTGAGTTTTATTTTTAACATTGCGTTCTTCTGTATGTATTTCCAAAATGTCAAATGTCAACTTTTCTTTTGTTTGCTAGAATTTCTAGGGTTGTCATGAATGCACCATTGTTCCTTGACCTTTGAGGATATTTTCATTGCACAAGCTCGTTGAAAAGTCTATCCAGCCACCCTGTAGGATGTGTTCCTTAATACATTGCTTTGGCAGTCTTTGTGAAACCTCTCAGGTTTAGTCATATTAAGTAAATGTAAAAAATCATGCTTTTTACCTAACAACCCCTCCTGAAAACCAGCGCTCTAAAGCAACTGGATCAATAAAAGTGTCTTTTGTGAACAAGATAACGACTTGAATTCCAACAGTGTACaatgtaaaatttaaaaaaaagatgcTTATAACAGAATAAAGGGAACAAAATAGGAGTATACGTTTGCATCCTGCAGTTGAATGTTTGAGTCTTACCGTACAAAAATGATAGAACATAATACATGCATAGAACATGAAAAAGGCTAGAACATGATAAATGCTAGAACATGATAAATGCTAGAACATGATAAATGCTAGAACATGATAAATGCTAGAACATGATAAATGCTAGAACATGATAAATGCTTGCCTTATTTGGTGTCAGATGTCtagaatacatttattttgtacaaTTATAGAGATGCACTAAAGCTGGTCCAAATGATGCAATGGGATTAAATGAAACTTTATTTTGATGTGCTTTGCAAATATGAAGCTTTAACTTATCTTTGAATATCTATGTTAATTATCATGGCAATACTTTTTTCCAATAAAGGTCGACTTCCTTTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932095 lncRNA upstream 21542 35434519 ~ 35515390 (+) True G1689245
TU1932067 lncRNA upstream 116677 35418048 ~ 35420255 (+) True G1689218
TU1932087 lncRNA upstream 120206 35415812 ~ 35416726 (+) True G1689237
TU1932078 lncRNA upstream 131318 35400704 ~ 35405614 (+) True G1689229
TU1932061 lncRNA upstream 149096 35387536 ~ 35387836 (+) True G1689215
TU1932205 lncRNA downstream 58691 35617450 ~ 35617666 (+) True G1689337
TU1932210 lncRNA downstream 84158 35642917 ~ 35643832 (+) True G1689342
TU1932164 lncRNA downstream 86045 35644804 ~ 35645180 (+) True G1689299
TU1932160 lncRNA downstream 86503 35645262 ~ 35645588 (+) True G1689295
TU1932165 lncRNA downstream 86944 35645703 ~ 35646183 (+) True G1689300
XM_021576673.2 mRNA upstream 14635 35511227 ~ 35522297 (+) True LOC110499539
XM_021576534.2 mRNA upstream 28273 35500779 ~ 35508659 (+) False LOC110499406
XM_036956253.1 mRNA upstream 28273 35501320 ~ 35508659 (+) False LOC110499406
XM_021576536.2 mRNA upstream 28273 35501928 ~ 35508659 (+) False LOC110499406
XM_021576535.2 mRNA upstream 28273 35502118 ~ 35508659 (+) True LOC110499406
XM_036956257.1 mRNA downstream 12495 35571254 ~ 35605236 (+) False LOC110499410
XM_021576540.2 mRNA downstream 12497 35571256 ~ 35605240 (+) True LOC110499410
XM_036956260.1 mRNA downstream 63875 35622634 ~ 35641168 (+) False LOC110499411
XM_036956258.1 mRNA downstream 65923 35624682 ~ 35641168 (+) False LOC110499411
XM_036956259.1 mRNA downstream 65923 35624682 ~ 35641168 (+) False LOC110499411
TU1932015 other upstream 152366 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 152366 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1210678 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2351656 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2875284 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 122608 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 142461 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 322819 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 561857 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 705901 36264660 ~ 36264981 (+) False G1690092

Expression Profile