RNA id: XM_036956255.1


Basic Information

Item Value
RNA id XM_036956255.1
length 2539
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110499407
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35536932 ~ 35558759 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTGGGCAGGATTAAAATGAACAATAAGGTGTAACGGGTccgaacaacaacaaaaaatgctgTTTAAAGCTTACTTCGTTATTCAATGATTTTTAATCATTTTCAGTGCGTCAGTGATAGCCCTAAAAGCCTAGTGGCAAGGGAAACACAACCAAACTGTTCGACCATGTTGCAGAGTGCCTGGGTGACTTCATGGAGAAGCAGAATATCAAGGACAAGAAGCTTCCAGTTGGCTTCACCTTTTCATTTCCCTGTGCACAAACCAAACTAAATGAGAGTTTTTTGCTCAATTGGACTAAACGCTTTAAAGCCAGTGGAGTTGAGGGAATGGACGTTGTGGCACTTCTGAATAAGGCCATCAAAAAGCGTGGGGACTATGACGCAGACATCATGGCAGTGGTCAATGACACAGTTGGAACCATGATGACCTGTGGCTTTGATGACCAGCGGTGTGAAGTTGGTATCATCATAGGCACAGGTACTAATGCTTGTTACATGGAGGAGCTGAGGCACATTGACCTGGTGGAGGGAGACGAGGGCAGGATGTGCATCAACACAGAGTGGGGAGCCTTCGGGGACAATGGGATGCTGGAGGACATTCGCACAGAGTTTGACAGAGAGATTGACCGGGGATCTCTGAATCCAGGAAAACAGCTGTTTGAGAAGATGGTCAGTGGGATGTACATGGGCGAACTTGTGCGACTCATCCTGGTCAAGATGGCCAAAGAAGAATTTTTGTTTGAGGGTCGGATAACCCCTGAACTTCTTACCAAAGGGACATTTGAAACAAAACATGTTTCTGCCATTGAAAAGAGTAAAGAAGGCCTTACCAAAGCCAAGGAGATCCTAGGTCGCCTAGGTGTAGAACCATCTGCAGATGACTGCATCGCCGTGCAGCACGTATGCACCATAGTCTCCCATAGATCAGCCAACCTCATTGCTGCCACTCTGGGTGGCATCCTCTCcaggctaaaggacaacaaagggAATCCTCGTCTTCGCACTACTGTGGGAATCGACGGCTCTCTCTACAAGATGCACCCGCAATATGCCCGGCGTCTCCACAAAACCGTCCGCCGCCTAGTTCCCGAGTCAGATGTCCGCTTCCTGCTCTCAGAGAGTGGCAGCTCCAAGGGCGCTGCCATGGTGACCGCCGTGGCCTACCGGCTGGCCGACCAGCGTCGTCAGATCACAGAGACCCTGGATGAGTTCAGACTGACCAATGACCAGCTGCTGGAGGTAAAGAAGAGGATGAGAACGGAGATCCAGAACGGCCTGGGGAAAAAGACCCATGACAGCGCCACCGTCAAGATGTGGCCCACATATGTACGCAGCACACCGGATGGATCAGAAAAGGGTGATTTCTTGGCTTTGGATTTAGGAGGGACAAACTTTAGAGTGCTGTTAGTGAAGATCCGTAGTGGCAAGCGACGGACAGTAGAGATGCATAACAAAATATATGCCATTCCTATGGAGGTGATGCAGGGGACCGGAGAGGAGctCTTTGACCACATTGTCCAGTGCATATCTGACTTCCTGGACTACATGGGCATGAAGAACACCCGCCTGCCTCTGGGCTTCACCTTCTCGTTCCCGTGTAGACAAACCAGCCTGGATGCGGGCATCCTGGTCACCTGGACCAAAGGATTCAAGGCCACTGACTGTGAAGGGGAGAATGTTGTGGGGCTTCTCAGAGAGGGGATTAAACGGAGAGAGGAGTTTGACTTGGACGTAGTGGCAGTAGTGAACGACACGGTTGGGACCATGATGACATGTGCATATGAAGAAGCCACCTGTGAGGTTGGCCTAATTGCAGGAACTGGCAGCAACGCCTGTTACATGGAGGAGATGAGGAACATTGAGACGGTGGAGGGAGATGTGGGGAGGATGTGTGTCAACATGGAGTGGGGCGCCTTCGGGGACAACGGCTGTCTGGATGACATCAGGACAGAATATGACAGAGCTGTGGATGACTTATCACTCAACCCTGGCAAGCAGAGGTATGAGAAGATGTGCAGCGGTATGTATCTAGGGGAGATTGTGCGAAACATCCTGATCGACTTGACGAAGCGTGGCTTCCTCTTCAGAGGGCAGATATCAGAGACCCTAAAGACCAGAGGCATTTTCGAAACTAAATTCCTCTCCCAGATTGAAAGTGACCGCTTGGCGCTACTGCAGGTGAGGTCCATTCTGCAGCAGCTAGGTCTGGACAGCACATGTGATGACAGTATCATTGTCAAGGAGGTGTGTGGTACAGTGTCTCACCGGGcggcccagctctgtggagctgGAATGGCCGCCGTCGTCGACAAAATACGAGAAAACCGCGGGCTGGACCAAATGGACATCACCGTGGGGGTGGACGGAACGCTCTACAAGCTTCATCCACACTTCTCGGGGATCATGCACCAGACAGTGAAAGAGTTGGCCCCTAAGTGCAATGTCAACTTCTTTCTCTCTGAGGACGGGAGCGGCAAGGGTGCAGCCCTCATCACCGCTGTGGGATGTCGCATGCGTGAGCAGGAGGAGAAGAGCTGA

Function

GO:

id name namespace
GO:0046835 carbohydrate phosphorylation biological_process
GO:0051156 glucose 6-phosphate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:0001678 cellular glucose homeostasis biological_process
GO:0005829 cytosol cellular_component
GO:0005524 ATP binding molecular_function
GO:0008865 fructokinase activity molecular_function
GO:0004340 glucokinase activity molecular_function
GO:0019158 mannokinase activity molecular_function

KEGG:

id description
K00844 HK; hexokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932095 lncRNA upstream 31334 35434519 ~ 35515390 (+) True G1689245
TU1932067 lncRNA upstream 126469 35418048 ~ 35420255 (+) True G1689218
TU1932087 lncRNA upstream 129998 35415812 ~ 35416726 (+) True G1689237
TU1932078 lncRNA upstream 141110 35400704 ~ 35405614 (+) True G1689229
TU1932061 lncRNA upstream 158888 35387536 ~ 35387836 (+) True G1689215
TU1932205 lncRNA downstream 59983 35617450 ~ 35617666 (+) True G1689337
TU1932210 lncRNA downstream 85450 35642917 ~ 35643832 (+) True G1689342
TU1932164 lncRNA downstream 87337 35644804 ~ 35645180 (+) True G1689299
TU1932160 lncRNA downstream 87795 35645262 ~ 35645588 (+) True G1689295
TU1932165 lncRNA downstream 88236 35645703 ~ 35646183 (+) True G1689300
XM_021576673.2 mRNA upstream 24427 35511227 ~ 35522297 (+) True LOC110499539
XM_021576534.2 mRNA upstream 38065 35500779 ~ 35508659 (+) False LOC110499406
XM_036956257.1 mRNA downstream 13787 35571254 ~ 35605236 (+) False LOC110499410
XM_021576540.2 mRNA downstream 13789 35571256 ~ 35605240 (+) True LOC110499410
XM_036956260.1 mRNA downstream 65167 35622634 ~ 35641168 (+) False LOC110499411
XM_036956258.1 mRNA downstream 67215 35624682 ~ 35641168 (+) False LOC110499411
XM_036956259.1 mRNA downstream 67215 35624682 ~ 35641168 (+) False LOC110499411
TU1932015 other upstream 162158 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 162158 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1220470 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2361448 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2885076 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 123900 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 143753 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 324111 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 563149 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 707193 36264660 ~ 36264981 (+) False G1690092

Expression Profile