RNA id: XR_005037990.1


Basic Information

Item Value
RNA id XR_005037990.1
length 3455
RNA type mRNA
GC content 0.45
exon number 18
gene id LOC110499411
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35622634 ~ 35641168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGTGTGCGTTTTTGACGCCTCCCATACGGACCTGAGGGATTCGGCTTCATAGGATCTTTACACTCTGCGGCGAATAAGGGATAGTCATTTGTCATTGATGACTGTGAAAGCGGCGTTCACACTTAGAATGTAGACGAAATGTGATAGGCATTATAGTGTTGGGATTGGATGGTTTAGCAATGCTATCCCAGACATTTCTGCAACAATGGTCGCCAGGTGAATTGTCCGTATGATATTTCGACGATGGCGACACCTGCAGAGCACGACCTTGCATTAGCTGAAGCAGAGAGCAACAAAGAGAAGTCTCAAGTATTCGGAATCCTTAGGTTTCAGGAAGAAAAATCGACCGGTGAAAAAGCTAGCACCACCACGTCCACGACCATGAGAGCCGGGGACGGGAGATGGCAGGCACCCATATTTGCACTAGCCAGGAAAGCATCAGAGACCTTTTCAGGAAGCAGCAGTCATGTTTTGGCGAAGGTAGCGGAACCCACATCTTTTGTAAACGAATGGAGTGCCCAAGCTCTGCGGGACCCTATGGCGATGGAGAGAGCCAACCTGCTGAACATGGCCAAGCTCAGCATCAAAGGCCTGATCGAGTCGGCCCTCAGTTTTGGACGCACCCTGGACTCCGACTACCCTCCACTCCAGCAGTTCTTCGTTGTCATGGAGCACTGCCTCAAACATGGTCTCAGAGTGAAGAAGTCATTTCTTGGATACAACAAGTCTCTGTGGGGTCCTCTGGAGATGGTGGAGAAGTTGTGTCCCGAGGCAGGAGAGATCGCAGCCAGTGTCAGGGACCTACCAGGACTAAAGACTCCGCTGGGCAGAGCTCGGGCCTGGCTGCGTCTAGCCCTGATGCAGAAGAGGCTGGCTGATTACCTCCGCCTTCTGATCACCAGAAAGGACCTGCTAAGTGATTTCTATGAGAATTCGGCTGtgatggtagaggaggagggtgcTGTCATCGTTGGCCTGCTGGTGGGACTCAATGTGATCGATGCCAACCTTTGTGTCAAGGGAGAAGACTTGGATACACAGGTTGGGGTCATTGACTTCTCCATGTACTTGAAAAATGACATTGATGACTACAGAAGTGAAGAAAGAAATGGTCAAATAGCAGCCATCCTGGACCAGAAGAACTACGTTGAAGAATTAAACAGGCAGCTTAATTCTTCAGTACACGGCTTACAAGGGAGGGTCGATAACTTGGAGAAATCAAACTCTAAACTCATTGAGGAGCTGGCGATTGCAAAAAACAACATAATCAAACTACAAGAGGAGAATCATCAGCTTAGAAATGAGAACACTATTATTCTCATGAAAGCTCAGCAGCAACTTGAGgtGACCCAGGTGGACGTGGACGTGGAGCTGGACACCTACAAGAAGTCGAGGCAGGGCCTGGACGAGATGTACAACGAGGCCAGGAGGCAGCTCAGGGAGGAGTGTCAACTACGCCAGGATGTGGAGAATGAGTTGGTGGTGCAGGTGAGCATGAAGCAGGAAATGGATCTGGCCATGAAACTGTTGGAGAAGGACATCCACGAAAAGCAGGACACACTGATCGGCCTCCGCCACCAGCTGGACGAAGTCAAGGCCATCAACGTGGAAATGTACTCAAAAATGCAGACTTCCGATGACGGCATGAAACAGAAGAACGACATGATCACTCGTTTGGAGGAGAAGACCAATCAAATCACAGCAACCATGAAACAGCTGGAACAAAGATTACAGGAGGTTGATCGGGACCGCTGGACCGCAGAAGATGGAACGCGCAAATTCAAGCAGGACTTTGTCAACAAAGCCGACAGCCTCCAAAAGCAGATAgcccagagagagaagcagagGTTGCAGCTGGAGACAGACCTAAAGATTGAGAAGGAGTGGCAGCAGACCTTACAAAACAACCtggagagggagcgagacatCGTCGCCCAGCTCAGTGCTGAAGCCCAGCAAATAAATGGACTTaaaaagGAGTTCCACAGGCTGCAGGATGAAAACAGCCAGCTGACTGGAATATGTGACGAACAGGAACAGGCCCTGGAGGAGCTGGGATGCAAACTTAGCGAATCAAAACTTAAAATCGAGGACATAAAAGAGGCAAATAAAGCTCTTCAGCTTACAATCAAATATTCCAGGGGGGACAGATCTGGCTGAAGGACAAAGACGCCAACATATGTAAACTGTGTGAGAAGGAGTTCTCCATCTCTCGGAGAAAGCACCACTGTAGAAACTGTGGGGAGATCTTCTGCAATGCCTGCTCTGACAACGAGCTGCCCCTCCCTGCCTCGCCAAAACCAGTGAGGGTCTGTGATACGTGCCACGCCCTTCTTCTCCAACGCTGTTCCTCAAATGCCACATGAGGTGCCTCCTTTCAGCCCCATCCACAGCTTTTACTTAGCCCCCCCTCTGAGTTTGTGTGACTGTTATCAGGTATCAAGCATTCATGTTCTCCTAGGTGTTGTCCTTTGTGTAACATGAGATTTGAGATGTTATATCTGTGACACTTATATGACACTAAGGCTGCGTTTAGATAGGCAGCACAATTTTGATGTTTTTTAAACTTTTGACCAATCATATCAGATaatttgccaataattgggcagaagatcagaattgggctgcctgtctccACAATAGACTAAAACCATGTGGGCAGCTGAGCATATCGTTCTAAATTTGCAGTAAGAATATCAAGAGACGATGCAAAGTATGTTTCTCTACGAACGGAGGAATACAGTGGTTGAGCCTGTTGTGATAAGCCATGGAGTCATTGGACATAATCATATTTTGGTTTTGTTGAGTCGTGTTATTTCACTTGATTGTGGATGGTCTTACCTGTTGTAATTCACACGTGCCTCTAATAAGCCAAAATACTGAATGAGTACCATTCACAGATTTGTTTCTGCATGAATAGAATGCAGGCACATTTCAGAAGTATGTTTACCAAAAGCACTAATGTTCCCAATGCTGCCTTggtgatgaagaagaagaaactacatgaaacagcacagcaaatGTATATGTTGTACTTTTGattactgactgaaaaacacaatATTAACTTAAGTAGGCCTCATTAATTATTAACTTAACAATAACTATTATTATCGTAAAAATATACTGTAGCTACCTAACGTAGCAAATGATTACGTTTGCAAACATACCCatcttgtatttatttttataaagtgaagaaaaaatatttcatttcagagtatttgttatttttctgcaCATTTTATTTGAATATTTGTCATACAAGTTTAAAATCTTGTATCAAAGTGACAAATAATTTcagatgtactgtacattaattTGTGTGTACCAAATTATACACTTGTTgtatattttgttttgtattcaatcagcaaaacagtgtgtttcaaTGTTTAATTTTCCAAAACTGGAATGAATACTTTTCATTAAAAATAAATGGATATGGTACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932205 lncRNA upstream 7016 35617450 ~ 35617666 (+) True G1689337
TU1932168 lncRNA upstream 73481 35550645 ~ 35551201 (+) True G1689303
TU1932095 lncRNA upstream 109292 35434519 ~ 35515390 (+) True G1689245
TU1932067 lncRNA upstream 204427 35418048 ~ 35420255 (+) True G1689218
TU1932087 lncRNA upstream 207956 35415812 ~ 35416726 (+) True G1689237
TU1932210 lncRNA downstream 1749 35642917 ~ 35643832 (+) True G1689342
TU1932164 lncRNA downstream 3636 35644804 ~ 35645180 (+) True G1689299
TU1932160 lncRNA downstream 4094 35645262 ~ 35645588 (+) True G1689295
TU1932165 lncRNA downstream 4535 35645703 ~ 35646183 (+) True G1689300
TU1932159 lncRNA downstream 5899 35647067 ~ 35649366 (+) True G1689294
XM_021576540.2 mRNA upstream 19442 35571256 ~ 35605240 (+) True LOC110499410
XM_036956257.1 mRNA upstream 19446 35571254 ~ 35605236 (+) False LOC110499410
XM_036956254.1 mRNA upstream 65923 35536932 ~ 35558759 (+) False LOC110499407
XM_036956255.1 mRNA upstream 67215 35546724 ~ 35557467 (+) True LOC110499407
XM_021576673.2 mRNA upstream 102385 35511227 ~ 35522297 (+) True LOC110499539
XM_021576543.2 mRNA downstream 10499 35651667 ~ 35662421 (+) False LOC110499412
XM_036956264.1 mRNA downstream 10499 35651667 ~ 35662421 (+) True LOC110499412
XM_036956263.1 mRNA downstream 21340 35662508 ~ 35672943 (+) True LOC110499413
XM_021576546.2 mRNA downstream 34614 35675782 ~ 35679417 (+) False LOC110499414
XM_021576547.2 mRNA downstream 34951 35676119 ~ 35679417 (+) False LOC110499414
TU1932015 other upstream 240116 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 240116 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1298428 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2439406 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 2963034 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 40199 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 60052 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 240410 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 479448 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 623492 36264660 ~ 36264981 (+) False G1690092

Expression Profile