RNA id: XM_021576545.2


Basic Information

Item Value
RNA id XM_021576545.2
length 1393
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC110499414
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35675782 ~ 35679430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGATTTGACGATGTAAAACGTAATTCGAGGGTTTAGGACCCAGGGCTGTAGTTTGTACTGCTGCCTATATAGGATCAAAATAGTCTAGGTGGGGTTCTCTCATTGTCTCCTCTTGACAAGGATTTTGAAACAAAATACACATTTACCCTGGGCAGATGCCTACCTACAGTTTCGATCAAATCAATGAAATAAAGATAGCTAGGAGACCAGGGATGCCTAACCTTTTTCACCTGCACTGGTCTGAAAGCGCAATATTTTGGGCCTATTCTATGGGGAGATTGTCTAGCCAAGCCTGCCCTATCAAGTCGGTGCAGACGAAGAAACTGAGGAAGCAATAGACTTTAGACTCTTGGAATGATACACCCTCTGGTTAAAGTTTATTTGGAGGCGTGCAGCTGTTAAACTTATTCATTTCTCTCCGTGAAATCAGCACAGGTCTACTCTAGTAAGTAATGGAGATTCCAGTATTCACTGTTGATGCGTTTACCAATTTACCTTTCAAAGGAAATCCTGCAGCAGTTTGTCTGCTTTTACATGAATTGCAGGATGATATGTACCAGAACATTGCTGCTGAGATGAACCTGTCAGAGACTGCCTTCATCATACGGCTGAATTCAAAAGATGACTTCAGCTCAGGAGCACGTTTTCGTTTGCGTTGGTTCACCCCCACCACTGAGGTTCCTCTGTGTGGCCATGCCACCCTGGCTTCAGCTGCAGTACTGTTTTACAAAAAAAAAAATGTCAACTCAACAGTGGTATTTGAGACATTGAGTGGAGAGCTGTATGTGCGACAACAAGGGGAATCTATAGTGATGGATTTCCCCCTGAACAAACCTACTCCTGTGGGTCTTAATGAATTTAAAGACATAGTTAAAGCTGCTGTGGGAGACCAGCCAGTTCAAGAAGTGTGCCTCTGTGCCATCACCAAAATGCTAATGGTGTGCCTTGCTGACAGTTGTGACAGGTCAGTGCTCACATCCCTGCAGCCAGACCCAGCAGTTCTGCTTCGTGTAGACACTGGCGGGAGGGTTAGGGGTCTGCTTGTCACCAGTATTGGAGACCCTGGCTGTCAGCCTGGCTATGACTTCTACTCCAGAAACTTCTTCCCTTGGTTCGGGGTTCCTGAGGACCCTGTGACTggcTCTGCGCATACTGTCCTTACAGGCTACTGGTCAGAGAAACTTGGCAAGAAAAAGATGCTAGCCTATCAGTGCTCTAGTCGTGGCGGGGAGCTGGAGCTTGAACTACAGGATGATGGCAGGCTCAATATCGCTGGCCAGGCGGTAACTGTCCTGCAGGGGATTCTCACTGTGTAGAGACTATGCTGTTTACTCAGAACGAGCCAAATGTACAACAGGAGCATAGcaattaaatgttttaaaaaactcTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932159 lncRNA upstream 26753 35647067 ~ 35649366 (+) True G1689294
TU1932165 lncRNA upstream 29936 35645703 ~ 35646183 (+) True G1689300
TU1932160 lncRNA upstream 30531 35645262 ~ 35645588 (+) True G1689295
TU1932164 lncRNA upstream 30939 35644804 ~ 35645180 (+) True G1689299
TU1932210 lncRNA upstream 32287 35642917 ~ 35643832 (+) True G1689342
TU1932226 lncRNA downstream 19819 35699249 ~ 35699456 (+) True G1689357
TU1932213 lncRNA downstream 22783 35702213 ~ 35705279 (+) True G1689345
TU1932486 lncRNA downstream 27223 35706653 ~ 35707228 (+) True G1689587
TU1932491 lncRNA downstream 30184 35709614 ~ 35709832 (+) True G1689592
TU1932523 lncRNA downstream 49531 35728961 ~ 35729163 (+) True G1689610
XM_036956263.1 mRNA upstream 3176 35662508 ~ 35672943 (+) True LOC110499413
XM_021576543.2 mRNA upstream 13698 35651667 ~ 35662421 (+) False LOC110499412
XM_036956264.1 mRNA upstream 13698 35651667 ~ 35662421 (+) True LOC110499412
XR_005037990.1 mRNA upstream 34951 35624682 ~ 35641168 (+) False LOC110499411
XM_036955559.1 mRNA downstream 21770 35701200 ~ 35702156 (+) False LOC118942012
XM_021576551.2 mRNA downstream 157893 35837323 ~ 35853921 (+) False LOC110499417
XM_021576550.2 mRNA downstream 157893 35837323 ~ 35866849 (+) True LOC110499417
XR_005038407.1 mRNA downstream 204750 35884180 ~ 35884233 (+) True LOC118942471
XR_005037991.1 mRNA downstream 291794 35971224 ~ 35975420 (+) True LOC118942065
TU1932015 other upstream 291553 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 291553 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1349865 34325837 ~ 34326254 (+) True G1687675
TU1929194 other upstream 2490843 33177293 ~ 33185276 (+) True LOC118942060
TU1928807 other upstream 3014471 32654354 ~ 32661648 (+) True G1686317
TU1932215 other downstream 1937 35681367 ~ 35682437 (+) True G1689347
TU1932214 other downstream 21790 35701220 ~ 35702139 (+) True LOC118942012
TU1932587 other downstream 202148 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 441186 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 585230 36264660 ~ 36264981 (+) False G1690092

Expression Profile