RNA id: XM_021576550.2


Basic Information

Item Value
RNA id XM_021576550.2
length 2844
RNA type mRNA
GC content 0.51
exon number 10
gene id LOC110499417
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35837323 ~ 35866849 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgctGATAAACCCCACCGAAGAAGAAGAACGGCTGTAAAGATGGCGGCTCCCATAACGTGGAGGAGGCTGCGATACTGTGTGTCCACGCCGGCCCTGGCTGGGGTTTTCACTCGAATATCAGACCGATTCTTCCGTACACGCGATCGGAGGAGAGGgtcaTCTTTGTTGCTCCTAGCCCCTCTCCTAGCAGAGGCcgactcctctccccttcctctcttcagATCCCCCGGGTCGACTGGAGCTCAGGGCACCGATGGCCTCCATGCCCGCTTCCTTTGGATGGCAGAACATGTGCCCGCCTTCAGGGTGCCTGGCACACACATCCACATCCTCACCTCCCCTGACCAGTTTTACCAGGCAATGaagGCTCGAATAAAGACGGCTAAGAGGAGAGTGGTGATGGCCTCTCTGTATCTGGGTACAGGACCCCTGGAACAGGACCTGGTGGACTGTATGCAGGAAGCTCTGCAGCGTTCACGGGAGGTTGACAACTCCGACCTGCAGGTCTCCATTCTATTAGACTTCACACGCGGCTCACGAGgTCAGACTAACTCTAGGACCATGTTGCTGCCGTTGCTGCAGCAGTACAGCAGTCAGATGCGTGTGTCTCTGTACCATACCCCTGATCTGAGAGGGTTGCTCCGGCTCCTGGTCCCACAGCGCTTCAACGAGACCATCGGGGTACAGCACATAAAAGCCTACCTGTTTGACGATGACCTCATCATCAGCGGGGCCAACCTGAGTGACTCGTACTTCACCAACAGACAGGACCGCTATGTGCTCCTGGAGAACTGTTGGGAGGTGGCAGACTTCTTCTCTGATCTGGTGGGTGCCGTGGGAGACGTGTCATTACAGCTACAGCCTGACAACTCTGTCAGCATGATGGAAAACATGGTGCACCCCTACAGAGGTAACCGGGATGATTTCTCGGCGTCGGCCCGGCAACACATCATGGAGGTGGTGAACACTGCTCGTATGCGCCAAGACATCGCCAACTCGGAACGTTTGACGCGGGAGAGCAAGGGTgaagaagggggagggaaggaggacacTTGGGTTTTTCCTCTGGTTCAGATGAAACCTCTGGGAATACAGGTGGATGAGGAGATCACACAgCGTTTGCTGACAGATGCGGGTCCCGGTGCAACTGTGTTTCTGACGTCGGGGTATTTCAACCTGACAAGGGCCTACATGTCGCTGGTTCTGGGGGTGGGCGCCGACTATCGGATCCTCACCGCCTCCCCGGAGGTCAACGGGTTTTTCGGCGCCAAGGGCATTGCCAGGGAGATTCCAGCGGCCTACATCCACATTGCCAGACAGTTCTACAGCAAAGTGTGTCAGCTGGGACAGCAGGAGAGAGTTCACCTCCACGAGTACCACAGAGCACACTGGACCTTCCACGCCAagggGCTGTGGTACTACTTGCGGGGGCATGTGCGGCCGTGCCTGACTCTAATTGGCTCTCCAAACTTTGGCTACCGCTCGGTGCACCGGGACCTGGAGGCCCAGATCGCCATAGTAACAGAGAACCAGGAACTACAGGCCCACTTGCAGGAAGAGCAGGAGATGTTGTACCAGAGGTCTACAGAGGTGTCCAGCTCTACGTTCCAGCAGCCAGATCGCCATGTCAAGCTGTGGGTCAAATTGGTCACTCCCCTCATCAAGAAGTTCTTCTGAGAGAAACAGCCAAACAAAGGAGGCAGACAGCGGCCAGTACCCACTTGGCAGGCTTCTCCTTGGTCTTGAGGTTGAAGGTCCAGATGAAGGTGGGACCCCTCATGCGGGTCTTGTAGACGGGACACTCATACACGTTCTTGGTCTCCTGTCGGTCCACCGGTACCGCCTTGATGAAGATCACCGGCATGTTGGGGGTCAGCTCCTTCAGACGAGCATCCGCTATCAcccctgtctgtgtgtcccaGCGTGCCCCTGTACATacacaaccagacacacacatacctactgtaaaaaGTTTAACTCTAAACATATAAAAACGTCATCTCTCCACAATGAGACTGTATGgttgtgtatatctacagtactgtacaaaTGGACCACTTAGTTATTAATGCCTGAGAAAAAGCAGTGTTTTTGTGGTGGAAACTAGTTTTCCATTAACTACAAACATTAATATGCTGAGTACATGTTGTCAGCAGGAGGAACGTTACTACAGGATGTTTTGTACATTCCATATCCATTAGTTTTGTATTGACAATGGAATCTGGTACATGATGAGAGTAGTGTGTGGGTCTGAAGGTGAAGACACAAACTGTGTGTGTGACGGTGACTAGACAGCCCGCTATCTGTGGAGTTTTGAGATCCTTGGAGGAACCTTAAGAACAGTTGAGAGGAGAACTGATCTAGCAGTGTTTACTATGGTATTCTAACCAGCTCATCCAGTGAGTCATCCCAGGAACTGAACTTGAAAGTAAGTTggaatagtagaatgcacaaggtgcgatttagaaattgggtagtgcatcagttcctcttgtcatgtcagtcattccATATCTTAGACAGCCATTTattcagaaatgtccagatcaactagcccatagATTTTATTGTAATATTTGGGAACTCCTGTGCTAACCAGCTCACAGTGAGGCACCCCAGAAACTGAActgggcactgtgtgtgtgtggatggatgacTCTGTAACCTAAAAGATCATTAtgattatttgttttgtttttttgttaatggTTTAAAGGTTTGACTGCACCTGATGTGTGTTATTGACTGACTTCCTCTCCAGGAGATGGATGCTAATGGATAAAATTGCCGCAAAGTGTTATACAGTGTATCACTTTGGAGATTAAAAAAAATCCGGCATggca

Function

GO:

id name namespace
GO:0008654 phospholipid biosynthetic process biological_process
GO:0016780 phosphotransferase activity, for other substituted phosphate groups molecular_function

KEGG:

id description
K00995 pgsA, PGS1; CDP-diacylglycerol---glycerol-3-phosphate 3-phosphatidyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932530 lncRNA upstream 76111 35760988 ~ 35761212 (+) True G1689615
TU1932523 lncRNA upstream 108160 35728961 ~ 35729163 (+) True G1689610
TU1932491 lncRNA upstream 127491 35709614 ~ 35709832 (+) True G1689592
TU1932486 lncRNA upstream 130095 35706653 ~ 35707228 (+) True G1689587
TU1932213 lncRNA upstream 132044 35702213 ~ 35705279 (+) True G1689345
TU1932511 lncRNA downstream 13236 35880085 ~ 35880513 (+) True G1689598
TU1932588 lncRNA downstream 16719 35883568 ~ 35883939 (+) True G1689672
TU1932592 lncRNA downstream 22752 35889601 ~ 35889827 (+) True G1689676
TU1932598 lncRNA downstream 29366 35896215 ~ 36066349 (+) False G1689681
TU1932599 lncRNA downstream 29366 35896215 ~ 35993589 (+) False G1689681
XM_036955559.1 mRNA upstream 135167 35701200 ~ 35702156 (+) False LOC118942012
XM_021576545.2 mRNA upstream 157893 35676119 ~ 35679430 (+) True LOC110499414
XM_021576546.2 mRNA upstream 157906 35675782 ~ 35679417 (+) False LOC110499414
XM_021576547.2 mRNA upstream 157906 35676119 ~ 35679417 (+) False LOC110499414
XM_036956263.1 mRNA upstream 164380 35662508 ~ 35672943 (+) True LOC110499413
XR_005038407.1 mRNA downstream 17331 35884180 ~ 35884233 (+) True LOC118942471
XR_005037991.1 mRNA downstream 104375 35971224 ~ 35975420 (+) True LOC118942065
XM_021576561.2 mRNA downstream 154250 36021099 ~ 36028246 (+) False LOC110499421
XM_021576560.2 mRNA downstream 155179 36022028 ~ 36028246 (+) True LOC110499421
XM_021576562.2 mRNA downstream 170873 36037722 ~ 36046077 (+) True LOC110499422
TU1932214 other upstream 135184 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 154886 35681367 ~ 35682437 (+) True G1689347
TU1932015 other upstream 452757 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 452757 35381709 ~ 35384566 (+) False LOC110499396
TU1930380 other upstream 1511069 34325837 ~ 34326254 (+) True G1687675
TU1932587 other downstream 14729 35881578 ~ 35881874 (+) True G1689671
TU1932658 other downstream 253767 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 397811 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 408633 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 438090 36304939 ~ 36312698 (+) False G1690116

Expression Profile