RNA id: XR_005038407.1


Basic Information

Item Value
RNA id XR_005038407.1
length 54
RNA type mRNA
GC content 0.37
exon number 1
gene id LOC118942471
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35884180 ~ 35884233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAATTTTActcttttagtatttctccagtaggtttcctgaAGGAGAAAGCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932588 lncRNA upstream 241 35883568 ~ 35883939 (+) True G1689672
TU1932511 lncRNA upstream 3667 35880085 ~ 35880513 (+) True G1689598
TU1932530 lncRNA upstream 122968 35760988 ~ 35761212 (+) True G1689615
TU1932523 lncRNA upstream 155017 35728961 ~ 35729163 (+) True G1689610
TU1932491 lncRNA upstream 174348 35709614 ~ 35709832 (+) True G1689592
TU1932592 lncRNA downstream 5368 35889601 ~ 35889827 (+) True G1689676
TU1932598 lncRNA downstream 11982 35896215 ~ 36066349 (+) False G1689681
TU1932599 lncRNA downstream 11982 35896215 ~ 35993589 (+) False G1689681
TU1932600 lncRNA downstream 102723 35986956 ~ 35993589 (+) True G1689681
TU1932703 lncRNA downstream 114462 35998695 ~ 36000062 (+) True G1689758
XM_021576550.2 mRNA upstream 17331 35837323 ~ 35866849 (+) True LOC110499417
XM_021576551.2 mRNA upstream 30259 35837323 ~ 35853921 (+) False LOC110499417
XM_036955559.1 mRNA upstream 182024 35701200 ~ 35702156 (+) False LOC118942012
XM_021576545.2 mRNA upstream 204750 35676119 ~ 35679430 (+) True LOC110499414
XM_021576546.2 mRNA upstream 204763 35675782 ~ 35679417 (+) False LOC110499414
XR_005037991.1 mRNA downstream 86991 35971224 ~ 35975420 (+) True LOC118942065
XM_021576561.2 mRNA downstream 136866 36021099 ~ 36028246 (+) False LOC110499421
XM_021576560.2 mRNA downstream 137795 36022028 ~ 36028246 (+) True LOC110499421
XM_021576562.2 mRNA downstream 153489 36037722 ~ 36046077 (+) True LOC110499422
XM_036956274.1 mRNA downstream 241270 36125503 ~ 36157782 (+) False LOC110499426
TU1932587 other upstream 2306 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 182041 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 201743 35681367 ~ 35682437 (+) True G1689347
TU1932015 other upstream 499614 35381709 ~ 35384566 (+) False LOC110499396
TU1932017 other upstream 499614 35381709 ~ 35384566 (+) False LOC110499396
TU1932658 other downstream 236383 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 380427 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 391249 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 420706 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 420706 36304939 ~ 36312698 (+) True G1690116