RNA id: XR_005037991.1


Basic Information

Item Value
RNA id XR_005037991.1
length 3867
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118942065
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 35971224 ~ 35975420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAAGGAGGTCCTAAGTCTTTGGACATGCAGTTCTTGGATTTCACATTTCACTAAGCAATTGAAACCGCAGAGAGAGAAAGTTGACATTACATAACAGAATCAGCTGCTTTGCATTTGGCAGTAATGGTTTGAAAGTTCCAGCGGTTTGCTactctgtgtgtgttacctgtatgtCCTGCAGTAGTTCTTGTTTCCTACGGCGGATGCTCTCCaactcctgtctctcctcaggACTCAGATCATCAGGTActaagaggggggagagagagagcgaggggggaggtGAGAATAACAGTGCTCTGGGTCACCATGGCAACATAGCCTAGATCAATCAAAATAATACCTCCCCAACACCCTCCTAGCCACTGActggggtgacacacacacacactacaaaccagccacatccctctctctccatcccacccTCTCCCCATCCCGCAAGCACTCACAAGACCAACCAAAACCTTCCAGACGCCCACACAAGCCTGAACAATATATGCAGTACAAAGATAAGAGAAAGAGGGAACCACATGTCCATCGGGGAGGAAGAAAGGACACACCCATTACACCATAGGGCAGCTGAAGTAGGCTGGAGCAGGGGACCAAACTATCAGCTCCCATTTTAACATTGAAGCTGAGAATAACATCACTTCCGCGAGCACACACACTCCCAAAATCCATGTGATatttcatcagaggaggagagggggggggtattTATTTTTCTCCCTCGCTTCCCCCCTCCGCAgtgttagaggcatcactacagacccgtgttcgatcccaggctgtatcaccactgGCCATGACCGGGAGTTCCGGGTTAGGTGAGGTTTTGGccgggggggggctttacttggctcatcacatTCTAACCACTCCTTGTGGCTGGCCAGGTGGCTGCAGGCTGACtgcggtcgtcagttgaacagtgtttcctcagacacattggtgcagctggcttccgggttaagcgggcaggtgAGTGCGAtatggcgggtcatgtttcagaggacgcatgacttgaccttcgcctctcctgagcccaTTGGAGAGTTGCAACAATGACACAAGATCGTAACTGAAATTGGGAAAAGGGGGATAAAATAAATTATCTGGCTTATGTGAGCATTAAAAATGTCCATAATTTCAGCCCAAGCAGCGAACTGTCAACCATGGGGGCCAGAGTGACAACCAGTGAGACGGAGAATGCAGCCCTGGGGGCCAAAGTAACagcgagggagaggtggaggtgctGAAGAGAGAGACCTCCAGAACATCAAAGTTTGTcaagtgcgccgaatacaacaggtgtagagaccttacagtgaaatgcttacttacaggctctaaccaacagtgcaaaaaaaggtattaggtgaacaataggtaagtaaagaaataaaaacaacagtaaaaaacagtagcgaggctataaaagtaacaaggctatacagacaccggttagtcaggctgattaaggtagtatgtacatgtagatatggttaaagtgactatgcatatatgatgaacagagagcagcagtagcgtaaagaggggttggcgggtggtgggacacaatccAGGCTAGTATTGGTTGTTTACCTCAGTTGAAAAGTAGAAAATGGCCCATTTCTAATCTTCTGGCAGTAGACCAGGGTTTCCAAAACTCGTGCCtgccccctcccccacccacccCGGGTGCatttttggtttttgccctagcgctCGCTACCAACTCATTGCAAACATTTGATTGTTTGAGTCAGAtgtgtagtgctaaggcaaaaaccaaaacgtgcacccgggTGGGGCCCCAGGACTAAGTTTAGGAAACCCTGGTTTAGACTATGCAGTTTATACTATGCATTTCATTTTCTCTTCTGTGTTCACAGCCAGACCAAAGGTGACCTTCTCTGCTTCACTGGCTGATATTGTAGGACCCCTCACTACTGCTGAAACCATAGTGGTCCAGCCCAAAATCTTTACAAACATCAGCAAGGCCTACAACCCAGATACAGGTACTGCATCTTCACAGCACAAGTGAAAGGAGTGTACTACTTCCGATCCACTGCCTGTGATTATCTACCCTTCAAACACACAGGTGTAACTATGTATAAGAATGGAGGGAAAGTGTAAATGTGATTCACCCTGATAGTGGAGGTTATGAGTATGTAAATAATGCAGCCACTCTAGAGCTGAAAGAGGGGGATGCGATATTCTTGAGTCTCCCGTCAGGCAGGAGGCTTCACCGTTACCTTTTACAGACAAACTTTACGGTATGCtgcctgtaaaaaaaaataactgtCTGGCAATGTATTTTAGAACACATTTTTACCACATTCTTGCCAGGATAAGCCCGTGCACATGCCTGCACATTTAGGAGAGGAAGTAGTCGTGGGCCTATGTGGGCGGACATCCATTTTAATCAATCCAttgaatatacatatatattacaaAGAAATCCATTTTACATGCGTTTTAGGCAGGTCCTAGAAAACATTATACGACTAATGAAATGTCATTTCAAAATAATGTAATTTTTTGTTGTTTAATGATGTTACTGGTCTGTGTAGTCTATCGGCTACATGGCTGTGCCATGCACAGGAAATCAAACGttgttttgttcattaaaacagacGACACTTAGGCTACACCGATCACAGTCAACACATTTTTATAGTAGACTAAGAATATAATGAATaacagaaaaaaatacaaaataatatttttccACATTTGCGTCACAGCAACATGTGGAACCACTGTCCTATATAAAAAAAGTGATACTTTGAAACAGAGCCCAAGCCCATTTCTTTTTCATCCACGTTTAATCTCTTTCCAACCCTCACTCCACTTTGTTAGGGAGCAGGCGTGGGGGTCTTACATTGAGAGTATCCTCATCATGATACCCATAGAAAAGAATCATCTAGATTTCAAAAGCATGCAAGTCTCATCTTCATATTTCACATATTCATATTCATCTTCATATTTCACATATTCATATTtcacatattcatattcatattcatctTCATATTTCACATATTCATATTCATCTTCATATTTCACAACCTCCGTGGGCTTTTGGAGATGCCTATACACGATCAAGTAAAATAATGTACACAAGCTCTGTCTCACGTCAGacgtttctcaaacgtcaaatttagaagttgttccaaacgtcaaaGTTAGAAGTGTTTAAGTTTAAATTTAGGCGTTAAATCCCAATTTTTAAAGGTTAGTGTTAAGtctaggcattaactcagaattcttaaggttaggcaatCACTCCGAATGGTTAAAGTAAGGATTAAGATTTGGGGTAGGCTTAAAGCAAAAATATGAAAAACTACTTTCTATTTGCTGGACTCATAAATACAACCttagcatctgcctctgattccaaacacccatccgccatccccgtccacaacgcaAAACCAAAAACTTGTAGGTAACGGCgttcactgttgcccctagtggccggtttccacatcCATCTCCCGACGTCTTCAGACtagggctgggcaatatggccaaaatatcatatggCATTTAAGTATTTTATGCTTTTGATTAataaaagttctacatttgctttatAAGTAGTGtgtgaccctagggtggcaacacatatattctaaattatttcaatgggtctttctccattctgattgtattgaacagtataaaacaatcagcctgaaaacaatgaccggTAGAAGCTACAGTAATTTTCATTATtgttagcaatgatttaggaatccttgtgagtaagtattagctaggttgccacttgttgttcacctattgaaattgaacttcagttcatggaaataaatagctagctagctagctact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932592 lncRNA upstream 81397 35889601 ~ 35889827 (+) True G1689676
TU1932588 lncRNA upstream 87285 35883568 ~ 35883939 (+) True G1689672
TU1932511 lncRNA upstream 90711 35880085 ~ 35880513 (+) True G1689598
TU1932530 lncRNA upstream 210012 35760988 ~ 35761212 (+) True G1689615
TU1932523 lncRNA upstream 242061 35728961 ~ 35729163 (+) True G1689610
TU1932600 lncRNA downstream 11536 35986956 ~ 35993589 (+) True G1689681
TU1932703 lncRNA downstream 23275 35998695 ~ 36000062 (+) True G1689758
TU1932717 lncRNA downstream 48828 36024248 ~ 36085501 (+) True G1689771
TU1932726 lncRNA downstream 64541 36039961 ~ 36090987 (+) True G1689779
TU1932676 lncRNA downstream 71778 36047198 ~ 36050269 (+) True G1689736
XR_005038407.1 mRNA upstream 86991 35884180 ~ 35884233 (+) True LOC118942471
XM_021576550.2 mRNA upstream 104375 35837323 ~ 35866849 (+) True LOC110499417
XM_021576551.2 mRNA upstream 117303 35837323 ~ 35853921 (+) False LOC110499417
XM_036955559.1 mRNA upstream 269068 35701200 ~ 35702156 (+) False LOC118942012
XM_021576545.2 mRNA upstream 291794 35676119 ~ 35679430 (+) True LOC110499414
XM_021576561.2 mRNA downstream 45679 36021099 ~ 36028246 (+) False LOC110499421
XM_021576560.2 mRNA downstream 46608 36022028 ~ 36028246 (+) True LOC110499421
XM_021576562.2 mRNA downstream 62302 36037722 ~ 36046077 (+) True LOC110499422
XM_036956274.1 mRNA downstream 150083 36125503 ~ 36157782 (+) False LOC110499426
XM_036956281.1 mRNA downstream 150324 36125744 ~ 36155883 (+) False LOC110499426
TU1932587 other upstream 89350 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 269085 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 288787 35681367 ~ 35682437 (+) True G1689347
TU1932015 other upstream 586658 35381709 ~ 35384566 (+) False LOC110499396
TU1932658 other downstream 145196 36120616 ~ 36125390 (+) True G1689732
TU1933087 other downstream 289240 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 300062 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 329519 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 329519 36304939 ~ 36312698 (+) True G1690116

Expression Profile