RNA id: XR_002469952.2


Basic Information

Item Value
RNA id XR_002469952.2
length 1836
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110499423
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36031153 ~ 36037747 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGAGGCATAAATAACAACACCGCAAATGTATGATAATGGGTTCTTATTTGCAATGTATTTTGTGTTTAATTTAGAAAGAGAAAAGTCAAGATCTGCTGCGTGCATATTTTAAAGGATGAGATGACATAAAGTTCATATAATAATTGATTTATTCCTTAAGTTATTTTTCTAGAGAGAGTGATCTGCCCCGGTCTGCGGAGGAGGCAACATTTTTGCAGTTCAGCTCTGAAATGGAAAGGCGGAGGGGCTGATTGGACCACGTTGATGTTGGTACAGGACCAAAGAGCTAAACGGTGACTGCAGACTCAACTCAGTTTGGGAGGTGGTTTGGAGACCTTGTTTGTGACTTTAGACCTAGGTGGTGAGGCGGAGGGTTACGATGGCTGTGAGCAGGTTTGACATAGATGCGCCGCGGTGGGATCAGTCCACGTTTATTGGCAGACTGAAGCACTTTGTCAACATCACAGACTGGAGGACAGCACTACTGCCAGACTCACGACTGGACGAGTCTAAAGCACTGGTGGAGAACTGAagTCAGATAGGAGTGGCCTATTTAACTGCAACTAGAACTGCACTAGCTACTGCTGTGGGACTCAACCTCTACACAAAGagagTTCCTGAATGGCATCGCTCTAACAGATGAGAATGGAAACAAACTGGGTCATTCCAAGGTAATGTCTGAATAATTAAATATTCTACTAAATATCGTATTTCTGACTGTTATACAAGAGCAGAAAAATTAAAAATGTCCTCTTCCTCGCGACAGAAAGCAGCTGTGAAGGGCATCACCCAGGTGGTCATTTCCCAGGTTACCATGGCAGCACCGGGCATGAGTAGTGTCAGAGGTTTAAGAGGGAGGGCTGTAGAATTTGAGATCAGTCCTCGCTCCATAGACAATGGAAAGTGGAGCGTGATCCTGTTACTCCCTACAATGACTCATTCCTCTCCTTCTTTTTCCACTTGCCACTCCTTTATCTACTTTCTCTCCTCCTGTGCACCCTCTCTTCTCCTAGTCATTCTCCCCATCATCATGCAGAGACTGGAGTATAACAAGTTTATGCAGTTGGGCCTTTAATCAAAACACCAAGTTCTGCTACTAGACATGCATAGGCTAACTAGCTACAATGTTATCGAATaaacatccagagttacagttcTGTTGACTAAATATCCAGTTACATTGTTCTTGACTAAGTGTGCTTAGAGTGCAGATTGAGGTGCTGTTTGGAGCGATAACCAGCCCTGTCTTTCTGTTAACAGAGGATCACCTTTGTCCACGGACCTTAACAAGTGATAATGGTGGGAGTGTTcctggtcttcatggtgccggcAGCCTGGTCCCTGTTCTCTCAGCAATGCTCCATGGGCAGTGTACAATATGTCTACTTCAACAAGGgcctctgaacacacacacctgccttctTAATCATCAGCCAAACAGGGAGAGCATctgaagaataaaaaaaatacaaaatgagcCAATCAGCATCCTCGGCGATGTCCAATAGGAACGCTTGTAGGAGAAATAGCTTTCTCCTGGTTTATCTTTGTTTATTTTCAACAAATCTTTGTGATTGAAGTGGAGATGTTCTCCAGAAGATAGAGATGTGCCACTGTACTCCAAACGGTGCCTTTATCCACGCTGGAGTACAGTGGCACATCCCATCCCTGCATTGAGGTGCGTTTTTGACCCATATCTCATGACGGCTCCACGTGTCTTAATGTAACCATGACTGCATTCTGACACCAGTGCAGCTCGGTTTAAACAAGTGTAACGCTAGGGTCAGTCTCTTCTGGCAATTAAGTGTGTGtaattaataaatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932876 lncRNA downstream 149625 35881499 ~ 35881806 (-) True G1689916
TU1932882 lncRNA downstream 152158 35879037 ~ 35879273 (-) True G1689922
TU1932857 lncRNA downstream 185684 35837374 ~ 35845747 (-) True G1689899
TU1932855 lncRNA downstream 190853 35836115 ~ 35840578 (-) True G1689897
TU1932842 lncRNA downstream 226336 35802908 ~ 35805095 (-) True G1689884
TU1932978 lncRNA upstream 78311 36115938 ~ 36117169 (-) True LOC118942067
TU1932979 lncRNA upstream 143456 36181083 ~ 36183572 (-) True LOC110499429
TU1933049 lncRNA upstream 148974 36186601 ~ 36187389 (-) False G1690063
TU1933050 lncRNA upstream 148974 36186601 ~ 36187160 (-) False G1690063
TU1933051 lncRNA upstream 148974 36186601 ~ 36187160 (-) False G1690063
XM_021576559.2 mRNA downstream 37809 35986511 ~ 35993622 (-) True LOC110499420
XM_036956267.1 mRNA downstream 46208 35951573 ~ 35985223 (-) True LOC110499419
XM_036956268.1 mRNA downstream 46333 35951573 ~ 35985098 (-) False LOC110499419
XM_021576554.2 mRNA downstream 51560 35951573 ~ 35979871 (-) False LOC110499419
XR_005037992.1 mRNA upstream 9450 36047077 ~ 36073126 (-) False LOC110499424
XM_036956270.1 mRNA upstream 9454 36047081 ~ 36073125 (-) True LOC110499424
LOC118942470 mRNA upstream 38491 36076118 ~ 36076188 (-) True LOC118942470
XR_005038402.1 mRNA upstream 41228 36078855 ~ 36078970 (-) True LOC118942465
XM_021576564.2 mRNA upstream 47311 36084938 ~ 36109840 (-) True LOC110499425
TU1932874 other downstream 164647 35865700 ~ 35866784 (-) True LOC110499416
TU1932446 other downstream 387654 35643368 ~ 35643777 (-) True G1689556
TU1932340 other downstream 551374 35478114 ~ 35480057 (-) True G1689461
TU1931971 other downstream 771223 35259886 ~ 35260208 (-) True G1689131
TU1931970 other downstream 771613 35258989 ~ 35259818 (-) True G1689130
TU1932968 other upstream 82880 36120507 ~ 36125398 (-) False LOC110499427
TU1932966 other upstream 83005 36120632 ~ 36125398 (-) False LOC110499427
TU1932967 other upstream 83005 36120632 ~ 36125398 (-) True LOC110499427
TU1933425 other upstream 382089 36419716 ~ 36420600 (-) True G1690367
TU1933722 other upstream 664919 36702546 ~ 36703441 (-) True G1690649

Expression Profile