RNA id: TU1932978


Basic Information

Item Value
RNA id TU1932978
length 838
lncRNA type sense_over
GC content 0.51
exon number 2
gene id LOC118942067
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36115578 ~ 36117417 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAAACCCCGCCTCAGCGCCGGTGGACATTCCAGGAAGATACTTTGATCACCTACAGTTCCCTGAGGGGTGGTCTTTTCTCTTAGCAGATATGGAAGAAGTGGAAGCAGAATGTGCGCCCATGAAATACGCCCCCAGGATGCAGCGGACCAGCCAGATGGAGAAgatgaggagctggaggaggaacAGAGGGTGCAACGGGAGCAGCTGGCAGCCATCTTCCAGCTGCTGAAGGAGAACCAGGAGACGTTTGGggaggtgtcagagagagacgtggaggaTCAACTCTACTCCATCTAAACCCCTAGTCTACTCACAGTCGACTGTACTACGTCTAACTCTACTTTCCCCAAACTCTACTCTATGTTAATCCCACATAAAGCTCACAGTCAAGATTAAGGTGCATTCACATGGTCCACTGGGTTTCAAAGGGGGTGTTGTTTCAAAGGTCCACTCTGTTTTGAGGCACATACTCTTCTCTAAAGATTCTGGGGTGATGGCAAATCAGGCTTTGGATAGTTGGGCCTGAGTGATTTGATTGGTCTGATAAAATACGAGGTTCTTATATCGTACACACCCATGAAAGCCAACAGTTTCAGCAAGCCTCACATCAAACTCTTATCTGAACAGATCTTTATCCTTTCAGCTATTCCCTGCCTTGCCTCGGCCGTATCCTTATCTTGTCCATTGCTATCTCTCCTCACCCTTTCCCACGGAGCACCCTTTCCCACGGAGCACCCTTTCCCACGGAGCACCCTTTCCCACGGAGCACCCTTTCCCACGGAGCACCCTTTCCCACGGAGCACCCTTTCCCACGGAGCACCCTTTCCCACGGAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932981 lncRNA downstream 78191 36031153 ~ 36037747 (-) True LOC110499423
TU1932876 lncRNA downstream 234132 35881499 ~ 35881806 (-) True G1689916
TU1932882 lncRNA downstream 236665 35879037 ~ 35879273 (-) True G1689922
TU1932857 lncRNA downstream 270191 35837374 ~ 35845747 (-) True G1689899
TU1932855 lncRNA downstream 275360 35836115 ~ 35840578 (-) True G1689897
TU1932979 lncRNA upstream 63914 36181083 ~ 36183572 (-) True LOC110499429
TU1933049 lncRNA upstream 69432 36186601 ~ 36187389 (-) False G1690063
TU1933050 lncRNA upstream 69432 36186601 ~ 36187160 (-) False G1690063
TU1933051 lncRNA upstream 69432 36186601 ~ 36187160 (-) False G1690063
TU1933054 lncRNA upstream 69432 36186601 ~ 36187683 (-) False G1690063
XM_021576564.2 mRNA downstream 6098 36084938 ~ 36109840 (-) True LOC110499425
XR_005038413.1 mRNA downstream 29558 36086253 ~ 36086380 (-) True LOC118942477
XR_005038402.1 mRNA downstream 36968 36078855 ~ 36078970 (-) True LOC118942465
LOC118942470 mRNA downstream 39750 36076118 ~ 36076188 (-) True LOC118942470
XR_005037992.1 mRNA downstream 42812 36047077 ~ 36073126 (-) False LOC110499424
XM_021576568.2 mRNA upstream 3442 36120611 ~ 36125433 (-) False LOC110499427
XR_002469958.2 mRNA upstream 3442 36120611 ~ 36125434 (-) False LOC110499427
XM_036956283.1 mRNA upstream 3442 36120611 ~ 36125437 (-) False LOC110499427
XR_005037994.1 mRNA upstream 3442 36120611 ~ 36125437 (-) False LOC110499427
XR_005037995.1 mRNA upstream 3442 36120611 ~ 36125437 (-) False LOC110499427
TU1932874 other downstream 249154 35865700 ~ 35866784 (-) True LOC110499416
TU1932446 other downstream 472161 35643368 ~ 35643777 (-) True G1689556
TU1932340 other downstream 635881 35478114 ~ 35480057 (-) True G1689461
TU1931971 other downstream 855730 35259886 ~ 35260208 (-) True G1689131
TU1931970 other downstream 856120 35258989 ~ 35259818 (-) True G1689130
TU1932968 other upstream 3338 36120507 ~ 36125398 (-) False LOC110499427
TU1932966 other upstream 3463 36120632 ~ 36125398 (-) False LOC110499427
TU1932967 other upstream 3463 36120632 ~ 36125398 (-) True LOC110499427
TU1933425 other upstream 302547 36419716 ~ 36420600 (-) True G1690367
TU1933722 other upstream 585377 36702546 ~ 36703441 (-) True G1690649

Expression Profile