RNA id: XR_005037994.1


Basic Information

Item Value
RNA id XR_005037994.1
length 2439
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC110499427
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36120507 ~ 36125437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCACTGGGAGGAGTTCTGAACCCGCCCACACAGAACAAGGAAGCTCTGGCGCCGCCATTTCACGTGCAAGGAGTTGAGAGAACGTGTGTGAGGTAGGCCTGGAAATCGGCAAAACAACATCGAATTTTACCAAAAATAACGATTTTCATCGGAAAACAAGTCCCGAATAGTCTGTTTTCGATTTGTAATCGTCTGGCTGTTTCATATTGAGGAGCAAAGATGAGCTACGGAAGGCCCCCGCCCGATGTCGAGGGTATGACCTCGCTCAAAGTGGACAATCTCACCTACCGAACTTCTCCTGAGACACTACGACGAGTTTTCGAGAAGTACGGCCGGGTGGGAGACGTGTACATCCCCCGCGATCGGTACACCAAGGAGAGCCGCGGGTTCGCTTTCGTGCGGTTCCACGATAACCGCGACGCTGAAGACGCGATGGACGCGATGGACGGGGCCTTGCTTGACGGGCGGGAACTGCGAGTCCAGATGGCGCGCTATGGCCGTCCACCAGACTCTCACTTCGGGCGCCGAGGCGGCGGTGGACCTCCAAGGAGGCACGGAGGCTATGGTCGCAGGAGCAGGAGtcGTTCGGCCAGCCCCCGTCGGCGCAGACGCAGTCGTTCCCGGAGCAGGAGCCGCTCCCGTGGCCGTGACTACAGCCGCTCCCGGTCTCGTTCCTACTCTAGATCCCGTTCCAAGTCCCGCACCCCCCGCAAGAGCAAGTCCCCATCTCGATCGAGGTCCCGTGGTGCTTCCAGGTCCCGCTCCCGCAGCCCGGCTTCCAACAGAGGCTCCAAATCCAGGTCGCGGTCCAAGAGCAGGCCCAAGTCCCCCGAGGACAACGGAACCGACTCTTAGTAACAACAGCTCCAACCCGGAGCCATTAAAACGCTGCGGTCCTCTTGTCAAACAGAGAGGTGGGGGTGTGGCAGAGATGGCAGTGTGAGAGCAGTTAGTGTGGTGTGACGCGACCCGCCCATGTGACCTGCCTGTTGCTGAGTTGGTGGGTGCGATGGCGGTTGCTATGGAGCAGGTCGTCAATGGCGACGCGTGGTCCGTGCTGTCAGTTGGTGAGGTGTGAGGTGGTGGTGAGGTACGGAACTTTCACAGGACCACAGACAGAATTCTGCTGGCTGTACCACTGTGTCTGTGGTCTCACTGGTGAAGGAGGGAGGACCCCAAGGTGAGATACGATGGAGACTTCTTCTCTGCGGACGCCAACCAGATCATAAGTCTGCCAGTGGACACCCCTCTATGCCCCACAGAATACTGACCAAAAGGTTATTGTGACTTGGTCTAAAATGATTTATTTGGTTTCAGTTGCCCAGAAAGACTCTACTATATAATTACCAAGGCGATGTAACTCCCATGACTAGAGTAGAGGACACGTTTAAAGGTTTTGTGAGGTGAATACTGGATTTTGTCTTATTGTTAGTGCTGGTTTGTTGCATTTTGATTTGATCTtgttaataaaacattttatggTGAAGTAGCTACAGCTTTTCTCTGTATTTAGTAGTCTTTTATTCTCTACAGACAGATTCTGTTTTTTGAGTTAactgtgttttgtttttttgcagaGTTGATTTTTAGCAAAGGGAGAGTGAATAGCCCCTAAATATTTTCCATTATTTTCTAAGCAAAAGCAGTAACAtgtagagggaagagagaaggaacaaAAATAATAAGCCAATATTGTATCAAATGTCACGTGTTATGTAATTGGTTAACCTGCCTAGCAgtgttatgtttttgttttttgcctAACGTCTACtagatcttttttttttctttcttgccGTTTCTCTGTTCTAAGTTTGCTTTCCTGTGAattctaaccctcctcctcttGTTATCTTTTGTGCATTAGGCGCAGTTGTGTAGCAGTTGAGTATTGCTGGTTAGCTGTTAAGGTGCGATGCAGTGCTGATGGTGAGGTGGCAGTGCAGTGGCTGGCGGGGGTGTTGCGGTACCCTGTGAGTGCCCGGTGCAGTTGTCGCCCGGCGCTCGTCTTGGTGCTACTGCTGCCGTTTGCCTTGTTCTGGTTTGTAAGAGTCAATTACAGCTGTGGTGGTAGATCTGATCACGCCATCTCTTCCCCCTGTGTTGTTCTCATATGGTCTCTTCCCATTCCTGATGTACAAATACACTCAtttttcccattctctctctcccaaccctagcctggtggaaccagcctgatcgctGCGTTTAACGTTTGTTCGATCAAGCTAGTTCCACCAGCTTATCCCAAACCCCCCTCCAACTGTGGTTTAGTCCCTCTGTTGTGAGCTGGTTGTACATTGTTGATGGAAAAGGCTCGATAGGGGAGGGATGAAGGGCATTCCACTAGCTTAACAAATGAATCTGTGGATTTTGTGTACCCTCGCAAGATTTCTTGTAACTGCTTTAGGTGAATGCTAATAAACATTTGTGGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932978 lncRNA downstream 3442 36115938 ~ 36117169 (-) True LOC118942067
TU1932981 lncRNA downstream 82864 36031153 ~ 36037747 (-) True LOC110499423
TU1932876 lncRNA downstream 238805 35881499 ~ 35881806 (-) True G1689916
TU1932882 lncRNA downstream 241338 35879037 ~ 35879273 (-) True G1689922
TU1932857 lncRNA downstream 274864 35837374 ~ 35845747 (-) True G1689899
TU1932979 lncRNA upstream 55646 36181083 ~ 36183572 (-) True LOC110499429
TU1933049 lncRNA upstream 61164 36186601 ~ 36187389 (-) False G1690063
TU1933050 lncRNA upstream 61164 36186601 ~ 36187160 (-) False G1690063
TU1933051 lncRNA upstream 61164 36186601 ~ 36187160 (-) False G1690063
TU1933054 lncRNA upstream 61164 36186601 ~ 36187683 (-) False G1690063
XR_005037993.1 mRNA downstream 3194 36115578 ~ 36117417 (-) False LOC118942067
XM_021576564.2 mRNA downstream 10771 36084938 ~ 36109840 (-) True LOC110499425
XR_005038413.1 mRNA downstream 34231 36086253 ~ 36086380 (-) True LOC118942477
XR_005038402.1 mRNA downstream 41641 36078855 ~ 36078970 (-) True LOC118942465
LOC118942470 mRNA downstream 44423 36076118 ~ 36076188 (-) True LOC118942470
XM_021576570.2 mRNA upstream 57343 36182780 ~ 36196450 (-) False LOC110499429
XM_036956285.1 mRNA upstream 134403 36259840 ~ 36336446 (-) False LOC110499540
XM_036956289.1 mRNA upstream 134403 36259840 ~ 36336446 (-) False LOC110499540
XR_005037999.1 mRNA upstream 134403 36259840 ~ 36336446 (-) False LOC110499540
XM_036956290.1 mRNA upstream 134403 36259840 ~ 36336447 (-) False LOC110499540
TU1932874 other downstream 253827 35865700 ~ 35866784 (-) True LOC110499416
TU1932446 other downstream 476834 35643368 ~ 35643777 (-) True G1689556
TU1932340 other downstream 640554 35478114 ~ 35480057 (-) True G1689461
TU1931971 other downstream 860403 35259886 ~ 35260208 (-) True G1689131
TU1931970 other downstream 860793 35258989 ~ 35259818 (-) True G1689130
TU1933425 other upstream 294279 36419716 ~ 36420600 (-) True G1690367
TU1933722 other upstream 577109 36702546 ~ 36703441 (-) True G1690649
TU1933771 other upstream 684262 36809699 ~ 36810143 (-) True G1690696
TU1933942 other upstream 768110 36893547 ~ 36896206 (-) True LOC110499438
TU1934589 other upstream 1113390 37238827 ~ 37239310 (-) True G1691432

Expression Profile