RNA id: XM_036956273.1


Basic Information

Item Value
RNA id XM_036956273.1
length 4670
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110499426
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36125503 ~ 36157782 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGTCGTTGTAACAGTCACTATACATTGCATTATTAAGCCATCATCTGCTGCAGCATTGCAGTGATTCGTTCCCACATTTGGGGAAGGTCACGTTATAGCGAACCGGGAGCTGCCTGCCTGCTGATATTGTACTGCGCAAAACCCATAGTCCGGATTTGTGCCTGACGTCATGGGTAGCCACCATTAGATTCGTTCTTTGACAATTGGAGCACGGAGAGTCCAAGCAAAGATAGCCATCAGCATCCCCGCACGGCCTTACAAACGGGAGAGAACAAACAGAAAAGATGTCGAGTGGACCGTTATACGGCGCTACATAGGGAGACACCTCGTTTTCCTCCTCAAAGCGGCCCCCGAAAAGCgctgcagtggagaggagaatgcGTCGCTAAGTGAAAGGATACATAGCGTTGCTGTTAAAGGGACGCAATTGTTGCTTTTCTGCCTCTAAACAAACAGTGACAGCCCCACGGGGCTTTGGATAAAGCAATAACAACAACTAATCCCCAGAACGAGCACAACAACTAGGCTACGGCTGCTAACCAAGGACATAAACCAAGAATAACAATGGAAACGGCAGCAGGAACTGGTTTAAGTTAAAGACAATAGAGATTTTCGAGAATAGCGAATGTTTTCTTGGTATGTACGTTAATTTGAGCTTTTATATTCTGTGGAAATGGGAGCTTTGACCAGCAGACAAAATGCAGGAGTGGAAGAGGTCGATATACCGTCCAACTCGGTGTACCGCTATCCACCGAAATCTGGAAGCTACTTTGCCAACCACTTCATCATGGGCGGGGAGAAGTTTGACTCCACCCACCCCGAGGGATACCTGTTCGGAGAGAACACCGACCTCAACTTCCTGGGAATCAGACCAGTGGCGTTTCCCTATGCGGCCCCGCCTCCTCAGGAGCCAGTAAAGACGCTACGAAGCCTTATAAACATCCGTAAAGATACACTGAGACTCGTACGGTGTAGTGAGGACCTGAAACCACCAGGGGAGAACGTGGCAGGGAAAAGCAAAGCCTGTTACAACATAGAGTTCACCTTCGACGCTGACACACAGGTGGCCATCACCATCTACTATCAAGCTATAGAGGAGTTCCACAACGGAGTGcctatCTACATTCCCCAGGACAGCTCTCTCCAGTCAGAGACGGTGCACTTTAAGAGAGGAGTCTGTCAGCAGTTCTGTCTGCCCTCCCACTCCATCAATTTGTCAGAGTGGGCCGATGAGGAGTTGCTGTTTGACATGGATAAGGATGTGTTTCCCATGGTCGTTCAAGCGACAGTAGACGAGGGGGAAGATCACATGGGTCACTCCCATGTCCTCCTGGCCACCTTTGAGAAGCACATGGATGGAAGCTACTGTGTCAAACCTCTGAAACAGAAACAAGTGGTGGATGGGGTGAGTTACCTTCTTCAGGAGATCTACGGCATCGAGAACAAGTACAACAGCCAAGAATCAAAGGTTGCGGATGATGAGATCAGTGATAACAGTGCggagtgtgtggtgtgtctgtcgGACGTCCGCGACACACTCATCCTGCCCTGCAGACACCTGTGTCTCTGTAATGCCTGCGCCGACACTCTCCGCTACCAGGCCAACTGCTGCCCCATATGCAGACTGCCGTTCCGGGCCCTGCTGCAGATCCGAGCCATGAGGAAGAAGctgagtcctctctctcctgccgGGTTTAACCCCGTTATCACCTCCCAGACCTCCGACTCAGAGGAACACTCGGCGTCAGACCACATCCCCCCCGGTTATGAGGCCGTGTCTCTCCTGGAGGCTCTGAACGGGCCCCTGAGCGTGTCTCCCTCGGCTCCCCCTCTGCAGGAACTCTCTGGGGGCCACGTCTCAGGGACCCTGCCCCACTATAGCAGTGAGCCCCACCCCGCCCCGGCACGCTCCATGTCCCCCCTGGACCACTCCAACTCCAGCCAGGGACTCAAACTGAAGAAGAGCGGCTCCAAGTCTCTCTCCCAGAATTCTTCGGTGCTGCCCGAGGAGGAGGACGAGAAGTCAGAACGCAGCGAATCAGAAGTTCAGGCCTGCCGCCGGAAACAACAACCGGAGAGTGGTGTAACTCCAGAGAGTGAGAATCTGACTCTATCCTCGTCTGGAGCCATCGACCAGTCCTCCTGTACTGGGACACCTTTCTCCTCCACCATCACCTCCCCTGAAGACCAAGTGAGCAGTAGCCTGGCCCAGTCAGTCATGTCCATGGCTTCGTCCCACAGCCATCACTCTCAGATCAGCACTGACACCCTGTCTTCCATGTCTGGCTCCTACCTGGCTGGGccggagggggaggtagagggggaggaggggggagaagcagagggggaggagaaccAGGATGCACCCATGGAGAGCCGGGGACCCTCACAGCAGGATGGGGAAgagcTACCCATGGAACCAAAAGAACAGAACTTCTCAGTCGCTGTGTCAGACGAGCAGGATTCAGAGgGAAATGATGTCACAGAGGAAGACTGCCCCTCCCCTTCCCACGAGCAGGGTGGGCGGAGCAGGTGTCCAGAGTTGGCCAATAACAATCAGGGCGTCGCCCTCTGCGACACGCACTGTTTGGGGGGGCTGGACAATGAGCAGGTTCCCGACTGCCGATTCGCCGgtctgaTGTATCTGGGAGGCTATAGGCCAGTGTTGGAGCCTCTCCCCCACCACGCCTCAACCAGTAATATCAACCTGGAGGAGCAGGGGGTGGAGACTAGGGATGGCCAGAGTCCCAAACAAACACCTCACACACCACGCCGCGGACCACTCATAGTGTAACACGCACACACCCGTCCAATTCCGACCTCAGCGTCATAACAGCACAGACTGATATTTTACGCAACCTCATGATTACGCAGTAGACCTTCCTCCCTGCATCTCCTCACCTAATCAACCAACGCCCATGTCCTGAGGCAGTGTCCTCACTGAACCGTCCTGCACCTCTCCTCACTGAACCGTCCTGCACCTCTCCTCAATCAACCGTCCTGCATCTCTCCTCACTCAACCGTCCTGCATCTCTCCTCACTCAACAGTCCTGCATCTCTCCTCACTCAACCGTCCAGCACCTCTCCTTGCTCTGGACAATAGATGAGAAGCATCTATCTCAGTTGCTAAATCTAATTCTAACAGGAAAATCTTGAAGAGGATTTAACCTATCCACAGTCCAAATAGGAGACTGCTAGAGTTAGACCATTCTCCCCCTCAATGTGTCATAATGGCTTTCTTGTGTTTCATGTCACTGGTAGACCTTTGGGACTCCTCCCCTTGCCtctaccaaccaaccaatcagggGTTAGTGTGATCTGCAATCTAATTAATATTCATGTATTTCTGTTTGACCTTCTAACGAGTGGTCGAACACTATAAAAACAACAGTTAGCTTCACTAGACGACCAAACTGGATTGTACTGGACTCACCAGCTCCAGTCCATGAACCAGTAGACTCTGGCCCTGGTTTTGCATGCAGCTCTTTTACGTCTCCAATCAGCCCTACTGTACTCAACTGTGATCTATCCTGAATGGGACTTGCCTCATTAGCTAAGAAACTGGACATGCTGGTGAAAGGAGGATTTGATCCAAAATGGCGGTGGTAGATAGATACTGAACTGTAAAGAAGACAGAGTGGAGTCCCTGAGAATGTACGATGCCGATGGAGGATGTGTAACACTCAGAGGAGAATGTAACGTAATGATTTGTTTTGGGGTTATTAACTGTAGAAGAATGACCTCTGAACTTTGAACTACCACCTGTGTCCCTTGCACACCTTTCCTAACGCACACACCAGATTTATCTCAGTCTGACTCACTGGTGTAAAGAGCTTTACCACAAAGACACTAAAGCAATACAgaacctgtacctgtacctgtaaaCAAGTAACACACACCACCCTACAAAAACACCTGTGCTGTTCGATAGACAAACCTGAACCTTCTCATTTTGTGAAAACCTTTAGTtagtttaattttgtattatattGTTTTTAGTGTATGCTCTACTGTTAATGTCGTCACatgttctgtgttttatttgtttaaaCAAAAATGTGTTGCTCATTACGTGGATGATATGTGAAATTAATAATTGtatttgagaagaaaaaaaaacgacatAAAAAAACGGGATGATGACACCAACATGGAATGCACTTCTTGCTGTTACCCAGGCAACATACTTTGCGGTGCATGAGGCGATTGTAGAGTAAAGCATGGTAGTCTAGGTCAGTCTCCACCCCTGTAGAGTACCCACAGTGGTATGCTCCACAGATCCTCACACCCCTAAAGAGTACCCATAGTGGTACACCCCTCTGACCTTTCTGTTTTGTCATATTGtctccaaatgacaccctattccctgtattgtgcactacatttgaccagagccttattccctTTTAAGTGAAGGTAGCGAGCCATATGGGgcaatagggtgacatttgagaTGCATAGATAGTCTATAAGATACACTACAGATGCTCTCTTCCTTATCCTCAACTACAGGCTGGCTACAGCTGTTAGCTAGTGTTCACACCGTCAGCTCATACACCCCTACCTGTATccctctcacctacagtatactggaccATGGGTCACTTTTGTAGAATGCTGATTGAAAATGTCAACTGcaagaaaaaaaataaagtttttcgAACTAAA

Function

GO: NA

KEGG:

id description
K25192 RNF157; E3 ubiquitin-protein ligase RNF157

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932767 lncRNA upstream 9910 36115589 ~ 36115868 (+) True G1689818
TU1932766 lncRNA upstream 10299 36115178 ~ 36115479 (+) True G1689817
TU1932757 lncRNA upstream 23628 36100542 ~ 36102150 (+) False G1689809
TU1932787 lncRNA downstream 2157 36159939 ~ 36160239 (+) True G1689835
TU1932795 lncRNA downstream 27398 36185180 ~ 36185495 (+) True G1689843
TU1932797 lncRNA downstream 30509 36188291 ~ 36188507 (+) True G1689845
TU1932802 lncRNA downstream 38325 36196107 ~ 36196451 (+) True G1689849
TU1933071 lncRNA downstream 90026 36247808 ~ 36248254 (+) True G1690078
XM_021576562.2 mRNA upstream 79701 36037722 ~ 36046077 (+) True LOC110499422
XM_021576561.2 mRNA upstream 97532 36021099 ~ 36028246 (+) False LOC110499421
XM_021576560.2 mRNA upstream 97532 36022028 ~ 36028246 (+) True LOC110499421
XR_005037991.1 mRNA upstream 150358 35971224 ~ 35975420 (+) True LOC118942065
XR_005038407.1 mRNA upstream 241545 35884180 ~ 35884233 (+) True LOC118942471
XM_021576569.2 mRNA downstream 3421 36161203 ~ 36170899 (+) True LOC110499428
XM_021576571.2 mRNA downstream 15406 36173188 ~ 36179601 (+) True mrpl27
XM_021576572.2 mRNA downstream 49596 36207378 ~ 36247512 (+) True LOC110499432
XR_005038403.1 mRNA downstream 265964 36423746 ~ 36423861 (+) True LOC118942466
XM_036956294.1 mRNA downstream 279423 36437205 ~ 36540905 (+) True LOC110499434
TU1932658 other upstream 388 36120616 ~ 36125390 (+) True G1689732
TU1932587 other upstream 243904 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 423639 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 443341 35681367 ~ 35682437 (+) True G1689347
TU1932017 other upstream 741212 35381709 ~ 35384566 (+) False LOC110499396
TU1933087 other downstream 106878 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 117700 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 147157 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 147157 36304939 ~ 36312698 (+) True G1690116
TU1933843 other downstream 720269 36878051 ~ 36880738 (+) True G1690753

Expression Profile