RNA id: XM_021576569.2


Basic Information

Item Value
RNA id XM_021576569.2
length 2458
RNA type mRNA
GC content 0.49
exon number 8
gene id LOC110499428
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36161203 ~ 36170899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATCTTTCTATCAATGACGTGGACTTTCATTGTAAGAATTTACTGCAGCCTTGCTGCTTTACACACAATATATTTGTCTGCGATATAATCGCATGCTACGACTATTTTGACAATTGTCTATAAAGTAGCCATTATTGTAGTATTTATTAGTAGGAATAGAAGGTCTGAGACGTTTGAAAACGGTGGTGATTTCTCAGTGAAACAGCCCCCCACCCAAAACTCAGGATGAGTAAAAACAAGGTGTTGAATCTGAAGGACAAAGTCGATGGCAACGAGATGGATCTGAGCCTATGTAACCTCACTGAAGTTCCTGTTAAAGAACTGGCTGCCTTCCCGAAAGTTACAGTCCTGGATCTGTCCTGCAACAACATCACCTCCCTGCCTctggAATTCTGCAGCCTGAGCCACCTGGTCAAGGTGGACCTCAGTAAGAACCAGCTGACTGTTCTACCTGATGATCTGGGTCGCCTTGGCAACCTGCAACACCTGGATCTGTACAACAACAAGCTGACCATTCTGCCAGTCAGCTTCTCACAGCTCAAGAACCTGAAGTGGCTGGATCTGAAGGACAACCCTCTGGaaatcaacctggccaaggctgcAGGAGACTGTCTGGATGAGAAACAGTGTAAACAATGTGCTGCCAAGGTTCTCCAGCACATGAGGATCCTTCAGGAAGAGGTAGACAAAGAGAGGGAGCGGCGCCTCCTAAAGGACAAAGAACTGGAAAAGAAGAAAGAgacgaaacagagagagagggaggcgaaAGAGAGGGAGGCTCGTAAACGAGAGAAggcagaggggaaggagaggaagaggaaggagtaCAACGCTCACATGGCTGCCTTAGCTGTCCAGGAACAGAAGAataagagaaaggaggagaagaaaaagCGGAATGGACAGATGGCAGCAGataaGAAAGCAGCAGCTGAATCCACCCCCAAAGCCCAAAGACGTTCTCTCATTGGCGTGCTTTTCAAGCTCCTCCTCCTGGTGCTGCTGGGATTGGCTGGAGTTGTCGGGGTATGTCATCTGACCGGGCTAAAGGAGGAGGCGGTGTGCGCGCCAATCAACATTGCTGTGGATGACGGCCTATCCTGGATCCGGGAACATGAAGTAGATGTGAGGGTCAGAGAGCTGGTACAGGAAGTTGATATCAGAGCCAGAGAGCTGCTGCAGAAACTAACCTCTCTGGCGCCGCATTTCCTCGAACCGCTCGGCGTCGCACCCACGGCAACGGAACCTGTGGAAACGTTAGAAAACTGAGTAAGGAAGGAAGGTAGGACTGAcgagaaaaaaagaaagatagACGACCAGCTTAAATTCCTATGGAATTGTCCTTTCGTCGCTCCTGGTTTCCTCTGTTTTGTACGCTCTCTTTTTAACCAGTGGCTGTCTGCGTCACAAGTTACTCACACCCTAGTCTCACACCCTAGTTCCCTAAAGTGTGGGACTCTATtgcaaagtagtgcactattaaaaagggaatagggtgtgattggAGGCTTTCCCTGTGACTCATGTGCACACTCCCAAGTCAACCCCCAGCCCCTACTACCCCCTAGGCACGGTAGATCTGAAAGGTCTGGATAAGTGTATTCAATATGGTGGAAATGCAAACTTGCCCATCACAGGGCAAGGTCAAGATACAATatatataccacacctgtccattCCTTTCATATCTACACAGGTGCACAGGACGTAAAGGgtaggggttgatttgggattggGCAATAGTAACAGATTCCGTCTGTGCTGCGTCAAAGTCTTAAGAGTCCaactgggcctcccgagtggcgcagcggtctacggcactgcagtgctagaggcgtcactacagatccaggTTAGATCCCTGGCTGCGACCGGgaaacccatgaggcggcgcacaattggcccagcgtcgtccgggttaggggagggtttggccggatggggatgtccttgtcccattgcgctctagcgactcctcgGTCGTCTGTTGCACAGTGTTTtttccaacacattggtgcggctggcttctgggttaagcgggcagtgtgtcaagaagcagtgcggcttggcagggtcatgtttcggaggacgctgTCCACCttagcctctcccgagtccgtatgcgagttgcagcgatgggacaaaacTTTAAcgaccaattggatatcacgaaattggaaggcaaaaggggtaaaatattattattattattattttttaaatagacTCCCAACTGCCAATCAGAGCCAGGTATTGGCCagaatttgagccaatcagatcaTAATATAAATGGTAtctgtggttggttggttggggcAGTCTGAGCATGTGCAGTGAGGCTGTAAATATGGAGTAATCCTGTGTCTTCCATCTGGGGCAAGTTGGCTGCATTCATTTTTGTAACGCTACATCTCTGCTCAAGGACTGTCAACATCAATAAATGCCTTTAAGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932787 lncRNA upstream 964 36159939 ~ 36160239 (+) True G1689835
TU1932767 lncRNA upstream 45335 36115589 ~ 36115868 (+) True G1689818
TU1932766 lncRNA upstream 45724 36115178 ~ 36115479 (+) True G1689817
TU1932757 lncRNA upstream 59053 36100542 ~ 36102150 (+) False G1689809
TU1932795 lncRNA downstream 14281 36185180 ~ 36185495 (+) True G1689843
TU1932797 lncRNA downstream 17392 36188291 ~ 36188507 (+) True G1689845
TU1932802 lncRNA downstream 25208 36196107 ~ 36196451 (+) True G1689849
TU1933071 lncRNA downstream 76909 36247808 ~ 36248254 (+) True G1690078
TU1933083 lncRNA downstream 79197 36250096 ~ 36250415 (+) True G1690088
XM_036956274.1 mRNA upstream 3421 36125503 ~ 36157782 (+) False LOC110499426
XM_036956275.1 mRNA upstream 3421 36125746 ~ 36157782 (+) False LOC110499426
XM_036956279.1 mRNA upstream 3421 36125755 ~ 36157782 (+) False LOC110499426
XM_036956272.1 mRNA upstream 3421 36125758 ~ 36157782 (+) False LOC110499426
XM_021576566.2 mRNA upstream 3421 36125765 ~ 36157782 (+) False LOC110499426
XM_021576571.2 mRNA downstream 2289 36173188 ~ 36179601 (+) True mrpl27
XM_021576572.2 mRNA downstream 36479 36207378 ~ 36247512 (+) True LOC110499432
XR_005038403.1 mRNA downstream 252847 36423746 ~ 36423861 (+) True LOC118942466
XM_036956294.1 mRNA downstream 266306 36437205 ~ 36540905 (+) True LOC110499434
XM_036956295.1 mRNA downstream 382980 36553879 ~ 36564830 (+) False LOC110499435
TU1932658 other upstream 35813 36120616 ~ 36125390 (+) True G1689732
TU1932587 other upstream 279329 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 459064 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 478766 35681367 ~ 35682437 (+) True G1689347
TU1932017 other upstream 776637 35381709 ~ 35384566 (+) False LOC110499396
TU1933087 other downstream 93761 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 104583 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 134040 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 134040 36304939 ~ 36312698 (+) True G1690116
TU1933843 other downstream 707152 36878051 ~ 36880738 (+) True G1690753

Expression Profile