RNA id: XM_021576572.2


Basic Information

Item Value
RNA id XM_021576572.2
length 2620
RNA type mRNA
GC content 0.46
exon number 6
gene id LOC110499432
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36207378 ~ 36247512 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAAAACAAAGCCCAGTTGATTTGAGCACACAAGGAAGAGTACTTTTGTGGGTGTGTCTGACTACGTGCACTCCACAAATAGTTACTTGATCGCAACATAGTTTCGAGGAGGACCTTACCGAGACGCAAGTGAAATAATACGTTCTGTTTTGATAGAAAGTAAACTGTGAGAGCGACCGGTCGTTCGAAGTAGTTAGTCCGTCAATTTAATTTCTGAGATTGTTTGTTGTCCACGTTTACCTTCTTTGTTGTGACGTCTTTGGACGTTATCTGTGAGAATATTTGATCAGCGGCAACATTATGTCAAACCTCCGGCCTAGATGTTGTATTTTAGGAAAGGGTTCGAATGGCTACGGCTTCCATCTGCACGGTGAGAAAGGGAAGACCGGACAGTTTATCCGACTGGTAGAACCAGACTCTCCTGCCGCCACCGCCGGTCTCTTCGCTGGGGACCGACTGACGTTCGTTAACGGGGACAGCGTGGAGGGTGAGAGCCACCAGCAGGTCGTTGCCCGGATACGAGCCACCGTGGGCAGCCTCGAGCTGATCGTGGTAGACGCTGAGACCGCGGAGGTACTGAAGAAGCACAACTTGGAGTGCCGTAAAGAGTATGTCACGGAGGGCATCCCGTTACCGGGCAGCAAATCGGGCCATGGGGATGCAGCGGAGAGCGAGGCGACTGCTACATCGGCAGAGAACGGAAACTTCTCCCTACAGAGGCTAAGTGTGAGCGCCAAGGACTCGAAGGCAGAGCTGCGTCCTCGTCTGTGCTCGATGAAGAAGGGTGCGACGGGCTATGGCTTCAACTTGCACAGTGAGAAGTCTAAACCGGGCCAGTACATTAGAGCTGTGGACGAGGAATCTCCTGCTGACAAGGCTGGTCTCAAACCGCAGGACAAGATAGTACAGGTTAACAGTAAGTCAGTAGCAGGGATGCAGCACAGTGAGGTGGTAGCAGCCATCAAGGCCGGGGGAGATGAGACCAGTCTACTGGTGGTGGATCGTGAGGCAGAAGCTTTCTTCAACAGCTGCAACGTCATTCCTACTGAGGCCCAcctcacagGACCTCTTCCTGAACCTGTGTCCAATGGAGGAGCAGAAGAAGAGGAGCTGGATGGTAAGGTAGCAGTAAAGCCTAAGGTGTCTGTCAGTGCATCGACATCCAGCACCACCTCCACTGCCTCTCTACCAACATCCGCTGCCAGCACCCCTCcaccagaggtccgGGTGCCTCCGGTTAAGGAGCCGAATGCGAGCCTCAGCATGTCTCTAGCCCAGGCCAAGGAGAGAGCTCACCAGAAACGCTCATCCAAGAAGGCCCCTGCCATGGACTGGAGCAAGAGGAACGAACTCTTCAGTAACCTATAAATCacctttccttcctcctttctctcgccctcgctccttcttttgctctctctctcaagcaGACACACAATGTACGACATGAACAGTGTTAATATTTTGTGATTTTCATGTGCTAATTGAGGGGTTTTCCACTTTATTttttttcaataaaaaaataattgaaaTGCCACTCCTGCATAAGAAACATTGTATAGTTTCCATCTAGTAGGATGATGAAGAAATCAAAGATGATGGAATATATGGAAATAAGAAATGAATGTGTATCATGAAGGTCTGTTGAATCTTATTGTCAGTCTATCTGCAATCTGATTGGTTGCTATACTTCCTTGTAGAATCACGAGCTAGCTAATAGCAAGCTGGGAGTGATTGAGTTTTTCGGGATGAGTTAAGATGAATCAAAACCTTCTTTCCAGAGACTCATGTTTAGTACTTCTGCCTGATCACTGGGCTCAATCCGTATGGTGGAAGATCCAAGTTATTTCTTCATCTAAAGTTAGTGAATTTTCCTGCGtttgcggagactgcattcacagtaaacgtTGACGCAAtcagaaatgacctttacatttgaACCTGGATCTTCTGCGATATGGATGAAACTCAGCCCTTAATGAATGACTAACCATCTGAATTCTTTAGCAATACAAAATAATTAATGAGGTCGACACGTCTGGTTAGCAAATATCACTGAATTTGTTCAGGAAATGTGTCATTCTAATGCTGACCACTGGTGTACTACCCTATCTTTTTGAAGATGTTGACATGTCAATTCTTAGACTGTAGAACCCATTCAGAATACATGAGATTCTCTGTTCTATATGTGACAATCATTGTTGGGTCACATTTCGGTTAAAGGGACTGAGGTATGTGGTTCTAGATGTTAACCCAAAGTAAACTGTTGTTTAACTGTAAAGTTAACCTGTCCAAACTGGTGTTCAATCACCACTATTGTAAAATCCTACGGTATTTTTATCGTTGTGATTCAACTTTTTGTCCTGCCTATGTCTCATCGTTTTAAAGAATGACGATTGTGTCTTCTAGATTTGTACATAACTCAAAATACAATTTCCGTCTTAAAGAAAGAAATCCTCAATTTGTTTGAAGACTGTTCCAGAATCTTTCTGGGTTGACGGGAGTGTTAGCCTACTGTATATGTGgcagctctggtccagggcgctACTGGCTGTGTACGGTACAAGGGCTGAGTTGTCAAATGTCTTGAGGATGACTGGTATAAATGTGGTATCAAACA

Function

GO: NA

KEGG:

id description
K13365 SLC9A3R1, NHERF1; sodium/hydrogen exchange regulatory cofactor NHE-RF1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1932802 lncRNA upstream 10927 36196107 ~ 36196451 (+) True G1689849
TU1932797 lncRNA upstream 18871 36188291 ~ 36188507 (+) True G1689845
TU1932795 lncRNA upstream 21883 36185180 ~ 36185495 (+) True G1689843
TU1932787 lncRNA upstream 47139 36159939 ~ 36160239 (+) True G1689835
TU1932767 lncRNA upstream 91510 36115589 ~ 36115868 (+) True G1689818
TU1933071 lncRNA downstream 296 36247808 ~ 36248254 (+) True G1690078
TU1933083 lncRNA downstream 2584 36250096 ~ 36250415 (+) True G1690088
TU1933084 lncRNA downstream 7304 36254816 ~ 36255336 (+) True G1690089
TU1933086 lncRNA downstream 14262 36261774 ~ 36263131 (+) True G1690091
TU1933088 lncRNA downstream 17148 36264660 ~ 36264981 (+) True G1690092
XM_021576571.2 mRNA upstream 27777 36173188 ~ 36179601 (+) True mrpl27
XM_021576569.2 mRNA upstream 36479 36161203 ~ 36170899 (+) True LOC110499428
XM_036956279.1 mRNA upstream 49596 36125755 ~ 36157782 (+) False LOC110499426
XR_005038403.1 mRNA downstream 176234 36423746 ~ 36423861 (+) True LOC118942466
XM_036956294.1 mRNA downstream 189693 36437205 ~ 36540905 (+) True LOC110499434
XM_036956295.1 mRNA downstream 306367 36553879 ~ 36564830 (+) False LOC110499435
XM_036955562.1 mRNA downstream 331214 36578726 ~ 36584090 (+) False LOC118942015
XM_036956296.1 mRNA downstream 448263 36695775 ~ 36809459 (+) False LOC110499541
TU1932658 other upstream 81988 36120616 ~ 36125390 (+) True G1689732
TU1932587 other upstream 325504 35881578 ~ 35881874 (+) True G1689671
TU1932214 other upstream 505239 35701220 ~ 35702139 (+) True LOC118942012
TU1932215 other upstream 524941 35681367 ~ 35682437 (+) True G1689347
TU1932017 other upstream 822812 35381709 ~ 35384566 (+) False LOC110499396
TU1933087 other downstream 17148 36264660 ~ 36264981 (+) False G1690092
TU1933095 other downstream 27970 36275482 ~ 36275943 (+) True G1690099
TU1933112 other downstream 57427 36304939 ~ 36312698 (+) False G1690116
TU1933113 other downstream 57427 36304939 ~ 36312698 (+) True G1690116
TU1933843 other downstream 630539 36878051 ~ 36880738 (+) True G1690753

Expression Profile